Clone Sequence Records
BS14084.3prime Sequence
430 bp (430 high quality bases) assembled on 2006-10-13
> BS14084.3prime
ATGGTCTAGAAAGCTTTCAAATTGAAAAGCGACACCAGAACGATGATGAG
CAGCACAACGGCTATCACGCCCAGAATGATCATCATCTTCATGTTGGCCC
ACCATTGCTTGCGCTTCAGCTTGCCGGCCTGCTGCTCGAACTGGGATGCT
CCCTGCTCCAGCTGATCCGCACGCTCGCCCAGTTCCGATAGCTTCTGGTC
CCGCTCCAGGACCTTCTCCACGTTCACACGCATAATCCCGACCACCTCGT
CCACCTTGGCTTGGGTCTGCTGCAGCTTCTTCTGGGCTGCATTGTTGTTC
CTGATTTGATGGTCACCGAATTGATTGTAGTTGTCATTCGCGTTCGGCGG
TGGCGGAAGTATGGGAAAATCGTTGTTGTTGGATCCCGAGGGGGAGGGGG
CTTCGTTGTTCTCCATGTCGACTGATAACT
BS14084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12210-PB | 399 | Syb-RB | 1..397 | 416..20 | 1985 | 100 | Minus |
CG12210-PA | 390 | Syb-RA | 48..317 | 300..31 | 1350 | 100 | Minus |
CG12210-PA | 390 | Syb-RA | 1..47 | 416..370 | 235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-RB | 1139 | CG12210-RB | 147..543 | 416..20 | 1985 | 100 | Minus |
Syb-RC | 921 | CG12210-RC | 147..532 | 416..31 | 1930 | 100 | Minus |
Syb-RD | 1070 | CG12210-RD | 194..474 | 300..20 | 1405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10250879..10251213 | 35..369 | 1675 | 100 | Plus |
3L | 28110227 | 3L | 1635328..1635439 | 114..225 | 245 | 81.2 | Plus |
2R | 25286936 | 2R | 10251928..10251974 | 370..416 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:17:21 has no hits.
BS14084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:35 Download gff for
BS14084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12210-PB | 1..399 | 17..416 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:38:48 Download gff for
BS14084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 142..545 | 17..421 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:04 Download gff for
BS14084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 142..545 | 17..421 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:04 Download gff for
BS14084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10250570..10250586 | 17..34 | 94 | <- | Plus |
2R | 10250879..10251213 | 35..369 | 100 | <- | Plus |
2R | 10251928..10251979 | 370..421 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:38:48 Download gff for
BS14084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6138075..6138091 | 17..34 | 94 | <- | Plus |
arm_2R | 6138384..6138718 | 35..369 | 100 | <- | Plus |
arm_2R | 6139433..6139484 | 370..421 | 96 | | Plus |
BS14084.5prime Sequence
430 bp (430 high quality bases) assembled on 2006-10-13
> BS14084.5prime
GAAGTTATCAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGAT
CCAACAACAACGATTTTCCCATACTTCCGCCACCGCCGAACGCGAATGAC
AACTACAATCAATTCGGTGACCATCAAATCAGGAACAACAATGCAGCCCA
GAAGAAGCTGCAGCAGACCCAAGCCAAGGTGGACGAGGTGGTCGGGATTA
TGCGTGTGAACGTGGAGAAGGTCCTGGAGCGGGACCAGAAGCTATCGGAA
CTGGGCGAGCGTGCGGATCAGCTGGAGCAGGGAGCATCCCAGTTCGAGCA
GCAGGCCGGCAAGCTGAAGCGCAAGCAATGGTGGGCCAACATGAAGATGA
TGATCATTCTGGGCGTGATAGCCGTTGTGCTGCTCATCATCGTTCTGGTG
TCGCTTTTCAATTTGAAAGCTTTCTAGACC
BS14084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12210-PB | 399 | Syb-RB | 1..397 | 17..413 | 1985 | 100 | Plus |
CG12210-PA | 390 | Syb-RA | 48..317 | 133..402 | 1350 | 100 | Plus |
CG12210-PA | 390 | Syb-RA | 1..47 | 17..63 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-RB | 1139 | CG12210-RB | 147..543 | 17..413 | 1985 | 100 | Plus |
Syb-RC | 921 | CG12210-RC | 147..532 | 17..402 | 1930 | 100 | Plus |
Syb-RD | 1070 | CG12210-RD | 194..474 | 133..413 | 1405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10250879..10251213 | 398..64 | 1675 | 100 | Minus |
3L | 28110227 | 3L | 1635328..1635439 | 319..208 | 245 | 81.2 | Minus |
2R | 25286936 | 2R | 10251928..10251974 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:05:01 has no hits.
BS14084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:35 Download gff for
BS14084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12210-PB | 1..399 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:42:07 Download gff for
BS14084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 142..545 | 12..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:19:32 Download gff for
BS14084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 142..545 | 12..416 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:19:32 Download gff for
BS14084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10250570..10250586 | 399..416 | 94 | <- | Minus |
2R | 10250879..10251213 | 64..398 | 100 | <- | Minus |
2R | 10251928..10251979 | 12..63 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:42:07 Download gff for
BS14084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6138075..6138091 | 399..416 | 94 | <- | Minus |
arm_2R | 6138384..6138718 | 64..398 | 100 | <- | Minus |
arm_2R | 6139433..6139484 | 12..63 | 96 | | Minus |
BS14084.complete Sequence
432 bp assembled on 2012-04-25
GenBank Submission: KX806467
> BS14084.complete
GAAGTTATCAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGAT
CCAACAACAACGATTTTCCCATACTTCCGCCACCGCCGAACGCGAATGAC
AACTACAATCAATTCGGTGACCATCAAATCAGGAACAACAATGCAGCCCA
GAAGAAGCTGCAGCAGACCCAAGCCAAGGTGGACGAGGTGGTCGGGATTA
TGCGTGTGAACGTGGAGAAGGTCCTGGAGCGGGACCAGAAGCTATCGGAA
CTGGGCGAGCGTGCGGATCAGCTGGAGCAGGGAGCATCCCAGTTCGAGCA
GCAGGCCGGCAAGCTGAAGCGCAAGCAATGGTGGGCCAACATGAAGATGA
TGATCATTCTGGGCGTGATAGCCGTTGTGCTGCTCATCATCGTTCTGGTG
TCGCTTTTCAATTTGAAAGCTTTCTAGACCAT
BS14084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-RB | 399 | CG12210-PB | 1..397 | 17..413 | 1985 | 100 | Plus |
Syb-RC | 459 | CG12210-PC | 1..386 | 17..402 | 1930 | 100 | Plus |
Syb-RD | 330 | CG12210-PD | 48..328 | 133..413 | 1405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-RB | 1139 | CG12210-RB | 147..543 | 17..413 | 1985 | 100 | Plus |
Syb-RC | 921 | CG12210-RC | 147..532 | 17..402 | 1930 | 100 | Plus |
Syb-RD | 1070 | CG12210-RD | 194..474 | 133..413 | 1405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10250879..10251213 | 398..64 | 1675 | 100 | Minus |
3L | 28110227 | 3L | 1635328..1635439 | 319..208 | 245 | 81.2 | Minus |
2R | 25286936 | 2R | 10251928..10251974 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:15:02 has no hits.
BS14084.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:42:15 Download gff for
BS14084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 134..537 | 12..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:42 Download gff for
BS14084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 139..536 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:38 Download gff for
BS14084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 147..544 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:47 Download gff for
BS14084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 139..536 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:29 Download gff for
BS14084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 147..544 | 17..415 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:29 Download gff for
BS14084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10250571..10250586 | 399..415 | 94 | <- | Minus |
2R | 10250879..10251213 | 64..398 | 100 | <- | Minus |
2R | 10251928..10251974 | 17..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:38 Download gff for
BS14084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6138076..6138091 | 399..415 | 94 | <- | Minus |
arm_2R | 6138384..6138718 | 64..398 | 100 | <- | Minus |
arm_2R | 6139433..6139479 | 17..63 | 100 | | Minus |
BS14084.pep Sequence
Translation from 16 to 426
> BS14084.pep
MENNEAPSPSGSNNNDFPILPPPPNANDNYNQFGDHQIRNNNAAQKKLQQ
TQAKVDEVVGIMRVNVEKVLERDQKLSELGERADQLEQGASQFEQQAGKL
KRKQWWANMKMMIILGVIAVVLLIIVLVSLFNLKAF*
BS14084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:24:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-PB | 132 | CG12210-PB | 1..132 | 1..132 | 676 | 100 | Plus |
Syb-PC | 152 | CG12210-PC | 1..131 | 1..131 | 662 | 98.5 | Plus |
Syb-PD | 109 | CG12210-PD | 1..109 | 1..132 | 503 | 81.8 | Plus |
Syb-PE | 129 | CG12210-PE | 1..108 | 1..131 | 489 | 80.2 | Plus |
Syb-PA | 129 | CG12210-PA | 1..108 | 1..131 | 489 | 80.2 | Plus |