Clone BS14084 Report

Search the DGRC for BS14084

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptSyb-RB
Protein status:BS14084.pep: Imported from assembly
Sequenced Size:432

Clone Sequence Records

BS14084.3prime Sequence

430 bp (430 high quality bases) assembled on 2006-10-13

> BS14084.3prime
ATGGTCTAGAAAGCTTTCAAATTGAAAAGCGACACCAGAACGATGATGAG
CAGCACAACGGCTATCACGCCCAGAATGATCATCATCTTCATGTTGGCCC
ACCATTGCTTGCGCTTCAGCTTGCCGGCCTGCTGCTCGAACTGGGATGCT
CCCTGCTCCAGCTGATCCGCACGCTCGCCCAGTTCCGATAGCTTCTGGTC
CCGCTCCAGGACCTTCTCCACGTTCACACGCATAATCCCGACCACCTCGT
CCACCTTGGCTTGGGTCTGCTGCAGCTTCTTCTGGGCTGCATTGTTGTTC
CTGATTTGATGGTCACCGAATTGATTGTAGTTGTCATTCGCGTTCGGCGG
TGGCGGAAGTATGGGAAAATCGTTGTTGTTGGATCCCGAGGGGGAGGGGG
CTTCGTTGTTCTCCATGTCGACTGATAACT

BS14084.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12210-PB 399 Syb-RB 1..397 416..20 1985 100 Minus
CG12210-PA 390 Syb-RA 48..317 300..31 1350 100 Minus
CG12210-PA 390 Syb-RA 1..47 416..370 235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-RB 1139 CG12210-RB 147..543 416..20 1985 100 Minus
Syb-RC 921 CG12210-RC 147..532 416..31 1930 100 Minus
Syb-RD 1070 CG12210-RD 194..474 300..20 1405 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10250879..10251213 35..369 1675 100 Plus
3L 28110227 3L 1635328..1635439 114..225 245 81.2 Plus
2R 25286936 2R 10251928..10251974 370..416 235 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:17:21 has no hits.

BS14084.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:35 Download gff for BS14084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12210-PB 1..399 17..416 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:38:48 Download gff for BS14084.3prime
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 142..545 17..421 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:04 Download gff for BS14084.3prime
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 142..545 17..421 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:04 Download gff for BS14084.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10250570..10250586 17..34 94 <- Plus
2R 10250879..10251213 35..369 100 <- Plus
2R 10251928..10251979 370..421 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:38:48 Download gff for BS14084.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6138075..6138091 17..34 94 <- Plus
arm_2R 6138384..6138718 35..369 100 <- Plus
arm_2R 6139433..6139484 370..421 96   Plus

BS14084.5prime Sequence

430 bp (430 high quality bases) assembled on 2006-10-13

> BS14084.5prime
GAAGTTATCAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGAT
CCAACAACAACGATTTTCCCATACTTCCGCCACCGCCGAACGCGAATGAC
AACTACAATCAATTCGGTGACCATCAAATCAGGAACAACAATGCAGCCCA
GAAGAAGCTGCAGCAGACCCAAGCCAAGGTGGACGAGGTGGTCGGGATTA
TGCGTGTGAACGTGGAGAAGGTCCTGGAGCGGGACCAGAAGCTATCGGAA
CTGGGCGAGCGTGCGGATCAGCTGGAGCAGGGAGCATCCCAGTTCGAGCA
GCAGGCCGGCAAGCTGAAGCGCAAGCAATGGTGGGCCAACATGAAGATGA
TGATCATTCTGGGCGTGATAGCCGTTGTGCTGCTCATCATCGTTCTGGTG
TCGCTTTTCAATTTGAAAGCTTTCTAGACC

BS14084.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12210-PB 399 Syb-RB 1..397 17..413 1985 100 Plus
CG12210-PA 390 Syb-RA 48..317 133..402 1350 100 Plus
CG12210-PA 390 Syb-RA 1..47 17..63 235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-RB 1139 CG12210-RB 147..543 17..413 1985 100 Plus
Syb-RC 921 CG12210-RC 147..532 17..402 1930 100 Plus
Syb-RD 1070 CG12210-RD 194..474 133..413 1405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10250879..10251213 398..64 1675 100 Minus
3L 28110227 3L 1635328..1635439 319..208 245 81.2 Minus
2R 25286936 2R 10251928..10251974 63..17 235 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:05:01 has no hits.

BS14084.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:35 Download gff for BS14084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12210-PB 1..399 17..416 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:42:07 Download gff for BS14084.5prime
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 142..545 12..416 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:19:32 Download gff for BS14084.5prime
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 142..545 12..416 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:19:32 Download gff for BS14084.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10250570..10250586 399..416 94 <- Minus
2R 10250879..10251213 64..398 100 <- Minus
2R 10251928..10251979 12..63 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:42:07 Download gff for BS14084.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6138075..6138091 399..416 94 <- Minus
arm_2R 6138384..6138718 64..398 100 <- Minus
arm_2R 6139433..6139484 12..63 96   Minus

BS14084.complete Sequence

432 bp assembled on 2012-04-25

GenBank Submission: KX806467

> BS14084.complete
GAAGTTATCAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGAT
CCAACAACAACGATTTTCCCATACTTCCGCCACCGCCGAACGCGAATGAC
AACTACAATCAATTCGGTGACCATCAAATCAGGAACAACAATGCAGCCCA
GAAGAAGCTGCAGCAGACCCAAGCCAAGGTGGACGAGGTGGTCGGGATTA
TGCGTGTGAACGTGGAGAAGGTCCTGGAGCGGGACCAGAAGCTATCGGAA
CTGGGCGAGCGTGCGGATCAGCTGGAGCAGGGAGCATCCCAGTTCGAGCA
GCAGGCCGGCAAGCTGAAGCGCAAGCAATGGTGGGCCAACATGAAGATGA
TGATCATTCTGGGCGTGATAGCCGTTGTGCTGCTCATCATCGTTCTGGTG
TCGCTTTTCAATTTGAAAGCTTTCTAGACCAT

BS14084.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-RB 399 CG12210-PB 1..397 17..413 1985 100 Plus
Syb-RC 459 CG12210-PC 1..386 17..402 1930 100 Plus
Syb-RD 330 CG12210-PD 48..328 133..413 1405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-RB 1139 CG12210-RB 147..543 17..413 1985 100 Plus
Syb-RC 921 CG12210-RC 147..532 17..402 1930 100 Plus
Syb-RD 1070 CG12210-RD 194..474 133..413 1405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10250879..10251213 398..64 1675 100 Minus
3L 28110227 3L 1635328..1635439 319..208 245 81.2 Minus
2R 25286936 2R 10251928..10251974 63..17 235 100 Minus
Blast to na_te.dros performed on 2014-11-28 12:15:02 has no hits.

BS14084.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:42:15 Download gff for BS14084.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 134..537 12..416 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:42 Download gff for BS14084.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 139..536 17..415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:38 Download gff for BS14084.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 147..544 17..415 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:47 Download gff for BS14084.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 139..536 17..415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:29 Download gff for BS14084.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 147..544 17..415 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:29 Download gff for BS14084.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10250571..10250586 399..415 94 <- Minus
2R 10250879..10251213 64..398 100 <- Minus
2R 10251928..10251974 17..63 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:38 Download gff for BS14084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6138076..6138091 399..415 94 <- Minus
arm_2R 6138384..6138718 64..398 100 <- Minus
arm_2R 6139433..6139479 17..63 100   Minus

BS14084.pep Sequence

Translation from 16 to 426

> BS14084.pep
MENNEAPSPSGSNNNDFPILPPPPNANDNYNQFGDHQIRNNNAAQKKLQQ
TQAKVDEVVGIMRVNVEKVLERDQKLSELGERADQLEQGASQFEQQAGKL
KRKQWWANMKMMIILGVIAVVLLIIVLVSLFNLKAF*

BS14084.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-PB 132 CG12210-PB 1..132 1..132 676 100 Plus
Syb-PC 152 CG12210-PC 1..131 1..131 662 98.5 Plus
Syb-PD 109 CG12210-PD 1..109 1..132 503 81.8 Plus
Syb-PE 129 CG12210-PE 1..108 1..131 489 80.2 Plus
Syb-PA 129 CG12210-PA 1..108 1..131 489 80.2 Plus