Clone Sequence Records
BS14085.3prime Sequence
555 bp (497 high quality bases) assembled on 2006-10-13
> BS14085.3prime
ATGGTCTAGAAAGCTTCTATAAGTTATTCACGCTGATGATCTGGTTGATC
CAGCCGATGAACGAGGACGTCTTCACATAGACGCCGGGCACATCCTGTCG
CCCGCAGCCGAATCCCCAGGAGACGAGGCCGGCCAGCTCGTAGAACCCAT
CATCTTGGCAAACTAGTGGACCACCTCCATCGCCCTGGCAGGCATCGTGT
CCCTCCTCTCCGCCGGCACAGAAACTGGAGGCGGGCAGGATGAAGATCTT
CTCCGTCACGGCGTTCACCTTCCGTATGCACTCCGTATCGCTCACAATGG
GAATCTCCGCCTCACGCACTCGCAGGGGAATGGGACCAGCTTCACCCATA
TATCCGTATCCGGTCACCGTGCATCGCTTGCCCGCCGCATGGCTGACTCC
TCGTGCAGGAAGACACACCAAGCACACTCCATCTCGAAGCTCCGCTTGAC
CATGGAGCTTCAGGAGAGCAATATCGTTGTCCAGGGTCTGGCTATTGTGG
TTGTGATGGATGTAGGTGGTGGGCACGCGCAATGTCTGTGCTCCTGGACT
GCCGT
BS14085.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15002-PB | 3144 | mas-RB | 2606..3144 | 555..17 | 2670 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mas-RC | 3654 | CG15002-RC | 2787..3325 | 555..17 | 2680 | 99.8 | Minus |
| mas-RB | 3657 | CG15002-RB | 2790..3328 | 555..17 | 2680 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4161995..4162320 | 17..342 | 1630 | 100 | Plus |
| 3L | 28110227 | 3L | 4162377..4162592 | 340..555 | 1065 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:17:34 has no hits.
BS14085.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:36 Download gff for
BS14085.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15002-PB | 2606..3144 | 17..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:38:52 Download gff for
BS14085.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mas-RB | 2790..3328 | 17..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:07 Download gff for
BS14085.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mas-RB | 2790..3328 | 17..555 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:07 Download gff for
BS14085.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4161995..4162317 | 17..339 | 100 | <- | Plus |
| 3L | 4162377..4162592 | 340..555 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:38:52 Download gff for
BS14085.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4161995..4162317 | 17..339 | 100 | <- | Plus |
| arm_3L | 4162377..4162592 | 340..555 | 99 | | Plus |
BS14085.5prime Sequence
576 bp (433 high quality bases) assembled on 2006-10-13
> BS14085.5prime
GAAGTTATCAGTCGACATGCCAAGACATTCGAGCACAATGAGCCGCCTTG
TTCTGCCCCTGATCTTCAGCATTTTGCTGGTCAGTAAGCCATCGCCATCA
CAGGCTCAGGATGAATCCCTGGCTGGCAGTTTCCTATCAGGTCTTTTGGA
CACCATAACGAGCACCGCAGACTCCAAGGATTGCCCTGGAGTATGTGTCC
ACACTTTGGCAACTTTAATTTGCTACGAAGTTCTAGACGATGTGGCTTGT
CCTTCGCCCAGCATGAAATGCTGCATAGAAAATGCTCCAGCCGGCAAGAA
TGCCACTGCTGTGAGAGCAACCACAACGCCTAAAACCACAACCACTGCTA
GCACCACTACCACCCAGAGAACCACCACCACGGTGGCCACTACTAGCACC
ACAAAGAGAACCCACCACAACGAGCACCACTCCAAAACCAAAACCAAAGC
CACAGACCAAGCGACCTGCCCCTAGCTCCCACCACAAAAGCCACTGTGGC
CACCACAAAGAAACCGAGCACCACCAAGAAAGTGGCTACGGCCAAACCCA
AGGACAAGGAGGAGGCCACCAAGGCC
BS14085.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15002-PB | 3144 | mas-RB | 1..558 | 17..576 | 2695 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:24:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mas-RC | 3654 | CG15002-RC | 185..742 | 17..576 | 2735 | 99.5 | Plus |
| mas-RB | 3657 | CG15002-RB | 185..742 | 17..576 | 2735 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4164898..4165183 | 576..289 | 1325 | 99 | Minus |
| 3L | 28110227 | 3L | 4165243..4165394 | 290..139 | 760 | 100 | Minus |
| 3L | 28110227 | 3L | 4165463..4165588 | 142..17 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:24:28 has no hits.
BS14085.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:37 Download gff for
BS14085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15002-PB | 1..558 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:44:08 Download gff for
BS14085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mas-RB | 185..742 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:29:59 Download gff for
BS14085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mas-RB | 185..742 | 17..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:29:59 Download gff for
BS14085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4165465..4165588 | 17..140 | 100 | | Minus |
| 3L | 4164898..4165181 | 291..576 | 98 | <- | Minus |
| 3L | 4165243..4165392 | 141..290 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:44:08 Download gff for
BS14085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4164898..4165181 | 291..576 | 98 | <- | Minus |
| arm_3L | 4165243..4165392 | 141..290 | 100 | <- | Minus |
| arm_3L | 4165465..4165588 | 17..140 | 100 | | Minus |
BS14085.complete Sequence
3176 bp assembled on 2010-05-13
GenBank Submission: KX802077
> BS14085.complete
GAAGTTATCAGTCGACATGCCAAGACATTCGAGCACAATGAGCCGCCTTG
TTCTGCCCCTGATCTTCAGCATTTTGCTGGTCAGTAAGCCATCGCCATCA
CAGGCTCAGGATGAATCCCTGGCTGGCAGTTTCCTATCAGGTCTTTTGGA
CACCATAACGAGCACCGCAGACTCCAAGGATTGCCCTGGAGTATGTGTCC
ACACTTTGGCAACTTTAATTTGCTACGAAGTTCTAGACGATGTGGCTTGT
CCTTCGCCCAGCATGAAATGCTGCATAGAAAATGCTCCAGCCGGCAAGAA
TGCCACTGCTGTGAGAGCAACCACAACGCCTAAAACCACAACCACTGCTA
GCACCACTACCACCCAGAGAACCACCACCACGGTGGCCACTACTAGCACC
ACAAAGAGAACCACCACAACGAGCACCACTCCAAAACCAAAACCAAAGCC
ACAGACCAAGCGACCTGCCACTAGCTCCACCACAAAAGCCACTGTGGCCA
CCACAAAGAAACCGAGCACCACCAAGAAAGTGGCTACGGCCAAACCCAAG
GACAAGGAGGAGGCCACCAAGGCCGATGATGCAAACAAAGACTGCACTGG
AGTTTGCGTGGCCGATCGCATAGCGGAGTACTGTGAGGCCTATTTGACCA
GCGATGGACTGTGCAAGGAAGGCACCAAGTGCTGCGTCTCCCTGGATGAG
TATTCCAATGGCAAGCTGCCCAAGGATATCTATATTCCAGCCAAACATAT
GAGCAACTTGAAGCCCAACCAGACGCTGTCCGAAAAATCGGCTCCCGCCA
AGAGTTCCAGTACGTCCACGACGTCCACTACTACCACCACCAGCACTACC
ACAACACCCGAACCGGCTAGAATAAACAACAGTTCTCCGAAGCCCACCAA
ACACAAGAAGCATCCGACCACCACAACGACGGAGGCAGCCGAGGAAGAGG
AGGAGCAGGAGACGGAGGAGGATGGCGAGGAGGAGGAGCCACCACTGAGC
AACAAGCTGAAGTCCGGACAAGGTCAGGGTCAGGTGTTGAAGGAATGCGA
GGGCGAGTGCATGAATGGAATATTTGCGATCTTCTGTGATGACATCGATT
CCGATGCTTTCTGTCCCGGAGAAGAAAGCTGTTGTGTGACTGGAGGTGCC
TCGGAGGCAACACCCTCCTCCAAGGCTCCACCCACCAAGCCGGCCATCAA
GCATGCTCCCAAGCCAGCAGCCAAGCCCGCTCGTCCCGCGTCTCCACCGC
CAGCACCACCATCTTCGACCTCTGGAGGCGGAGGAGGTGGTGACTTCCTC
TCTCAAATCATATCCTTTGCGGAGAGCACTCTGAACTCGCCATCTCCACC
ACCGCCACCACCTCAGGCTCCGATTCAGGTGCCTCGCTGTCCAGGATTCT
GTCTGCTCAACATTATGGCCGCCTTCTGCGAGAGACCCTCGGTGCTGGTT
TCCACACCCACAACGTGTGCCAAGGGTTCGGTATGCTGCGACAACTCAAG
AGCCGGAGCTCCCAAGCCCAAGTTGCCACCACCGACGCCGTCGCCCACGG
CCTCGCCCACTGCTCCACCATATGTCCTGCCCAATACCCCGAGTCCCGAT
CCGCGAGAAGAATGCCCAGGATCCTGTATCGTCAGCCTGCTCAGCTTCAC
TTGCTTCAAAAACGCCGAGATGACTGACTTGTTCCGCTGCAAGCGTTCCG
GCCAGATTTGCTGTGCGCCCAAGAGCAAGATCCTTGAGAAGCAGCAGTTC
CAGACGCGCAACGACACCGCCTACTACCCGGCACCGCCGCCACCGCCCAT
TGGTCCACCACAGGCATATCCCCCACAGACACCACCCTACTCCTACATGA
ACAATCCACCGCCACAGGGACCTCCACCCCAGATGGCGCCTCACCACCCC
AATCCCTACCAGCCACCGCCACCGGCGCCCAACTACGCAGATTACTATCC
AGTTTCCGGACCGGGACTACCTCCACAACCTCAGCCACCGATGACCACGC
CTCCGACGACAACTACAACCACCACGACTCCACGGCCACATGTCTACTCC
AAGTATGTGTGTGGTGTGAAGGGAACTCTGCGAACGGGAAGATCCCAGGC
TCTATCTTTCGTCTCCTACGCCCGTGCCAAGTACGGAGTACAGAGAACAG
CTCGCCAGATGACCTCCGCCGCCGGATACTCTCCCAACTTCAACAAATCC
AATGAGAGATTGGTCCTAGGATCCGCCATTGTGCCCATCCAGATTCACAA
CGACAAACTGGGTGACCTAGTGGAGTCCAGCAGTCTACAGAGCAACCAAT
TACGTTCGTACCACAATCACCAAGCTCAGGCAGATCAGCCGGATCTGGTC
TATCCGGAATACTACCAACAGAGGTCTCTTTACGGACTCCAGTCGAACTT
CAGCGGAAGACGAAGGGCACGAGTGGTGGGAGGAGAGGATGGCGAGAATG
GAGAGTGGTGCTGGCAGGTGGCTTTGATCAATTCCTTGAATCAATATCTA
TGTGGAGCTGCTTTAATCGGAACCCAGTGGGTTCTTACCGCAGCCCATTG
TGTGACCAACATTGTTCGTTCCGGAGATGCTATCTACGTGCGGGTTGGTG
ATTACGATCTAACCCGGAAATACGGCAGTCCAGGAGCACAGACATTGCGC
GTGGCCACCACCTACATCCATCACAACCACAATAGCCAGACCCTGGACAA
CGATATTGCTCTCCTGAAGCTCCATGGTCAAGCGGAGCTTCGAGATGGAG
TGTGCTTGGTGTGTCTTCCTGCACGAGGAGTCAGCCATGCGGCGGGCAAG
CGATGCACGGTGACCGGATACGGATATATGGGTGAAGCTGGTCCCATTCC
CCTGCGAGTGCGTGAGGCGGAGATTCCCATTGTGAGCGATACGGAGTGCA
TACGGAAGGTGAACGCCGTGACGGAGAAGATCTTCATCCTGCCCGCCTCC
AGTTTCTGTGCCGGCGGAGAGGAGGGACACGATGCCTGCCAGGGCGATGG
AGGTGGTCCACTAGTTTGCCAAGATGATGGGTTCTACGAGCTGGCCGGCC
TCGTCTCCTGGGGATTCGGCTGCGGGCGACAGGATGTGCCCGGCGTCTAT
GTGAAGACGTCCTCGTTCATCGGCTGGATCAACCAGATCATCAGCGTGAA
TAACTTATAGAAGCTTTCTAGACCAT
BS14085.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mas-RB | 3144 | CG15002-PB | 1..3144 | 17..3160 | 15720 | 100 | Plus |
| mas-RC | 3141 | CG15002-PC | 1..3141 | 17..3160 | 15640 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mas-RB | 3657 | CG15002-RB | 185..3328 | 17..3160 | 15720 | 100 | Plus |
| mas-RC | 3654 | CG15002-RC | 185..3325 | 17..3160 | 15640 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4163670..4164584 | 1658..744 | 4575 | 100 | Minus |
| 3L | 28110227 | 3L | 4162713..4163613 | 2559..1659 | 4505 | 100 | Minus |
| 3L | 28110227 | 3L | 4161995..4162320 | 3160..2835 | 1630 | 100 | Minus |
| 3L | 28110227 | 3L | 4164885..4165183 | 587..289 | 1495 | 100 | Minus |
| 3L | 28110227 | 3L | 4162377..4162658 | 2837..2556 | 1395 | 99.6 | Minus |
| 3L | 28110227 | 3L | 4164644..4164799 | 743..588 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 4165243..4165394 | 290..139 | 760 | 100 | Minus |
| 3L | 28110227 | 3L | 4165463..4165588 | 142..17 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:14:33 has no hits.
BS14085.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 13:55:38 Download gff for
BS14085.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mas-RB | 182..3325 | 17..3160 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:32 Download gff for
BS14085.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mas-RB | 185..3328 | 17..3160 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:58 Download gff for
BS14085.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mas-RB | 185..3328 | 17..3160 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:58 Download gff for
BS14085.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4161995..4162317 | 2838..3160 | 100 | <- | Minus |
| 3L | 4162377..4162654 | 2560..2837 | 100 | <- | Minus |
| 3L | 4162713..4163613 | 1659..2559 | 100 | <- | Minus |
| 3L | 4163670..4164584 | 744..1658 | 100 | <- | Minus |
| 3L | 4164644..4164799 | 588..743 | 100 | <- | Minus |
| 3L | 4164885..4165181 | 291..587 | 100 | <- | Minus |
| 3L | 4165243..4165392 | 141..290 | 100 | <- | Minus |
| 3L | 4165465..4165588 | 17..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:32 Download gff for
BS14085.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4161995..4162317 | 2838..3160 | 100 | <- | Minus |
| arm_3L | 4162377..4162654 | 2560..2837 | 100 | <- | Minus |
| arm_3L | 4162713..4163613 | 1659..2559 | 100 | <- | Minus |
| arm_3L | 4163670..4164584 | 744..1658 | 100 | <- | Minus |
| arm_3L | 4164644..4164799 | 588..743 | 100 | <- | Minus |
| arm_3L | 4164885..4165181 | 291..587 | 100 | <- | Minus |
| arm_3L | 4165243..4165392 | 141..290 | 100 | <- | Minus |
| arm_3L | 4165465..4165588 | 17..140 | 100 | | Minus |
BS14085.pep Sequence
Translation from 16 to 3159
> BS14085.pep
MPRHSSTMSRLVLPLIFSILLVSKPSPSQAQDESLAGSFLSGLLDTITST
ADSKDCPGVCVHTLATLICYEVLDDVACPSPSMKCCIENAPAGKNATAVR
ATTTPKTTTTASTTTTQRTTTTVATTSTTKRTTTTSTTPKPKPKPQTKRP
ATSSTTKATVATTKKPSTTKKVATAKPKDKEEATKADDANKDCTGVCVAD
RIAEYCEAYLTSDGLCKEGTKCCVSLDEYSNGKLPKDIYIPAKHMSNLKP
NQTLSEKSAPAKSSSTSTTSTTTTTSTTTTPEPARINNSSPKPTKHKKHP
TTTTTEAAEEEEEQETEEDGEEEEPPLSNKLKSGQGQGQVLKECEGECMN
GIFAIFCDDIDSDAFCPGEESCCVTGGASEATPSSKAPPTKPAIKHAPKP
AAKPARPASPPPAPPSSTSGGGGGGDFLSQIISFAESTLNSPSPPPPPPQ
APIQVPRCPGFCLLNIMAAFCERPSVLVSTPTTCAKGSVCCDNSRAGAPK
PKLPPPTPSPTASPTAPPYVLPNTPSPDPREECPGSCIVSLLSFTCFKNA
EMTDLFRCKRSGQICCAPKSKILEKQQFQTRNDTAYYPAPPPPPIGPPQA
YPPQTPPYSYMNNPPPQGPPPQMAPHHPNPYQPPPPAPNYADYYPVSGPG
LPPQPQPPMTTPPTTTTTTTTPRPHVYSKYVCGVKGTLRTGRSQALSFVS
YARAKYGVQRTARQMTSAAGYSPNFNKSNERLVLGSAIVPIQIHNDKLGD
LVESSSLQSNQLRSYHNHQAQADQPDLVYPEYYQQRSLYGLQSNFSGRRR
ARVVGGEDGENGEWCWQVALINSLNQYLCGAALIGTQWVLTAAHCVTNIV
RSGDAIYVRVGDYDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALL
KLHGQAELRDGVCLVCLPARGVSHAAGKRCTVTGYGYMGEAGPIPLRVRE
AEIPIVSDTECIRKVNAVTEKIFILPASSFCAGGEEGHDACQGDGGGPLV
CQDDGFYELAGLVSWGFGCGRQDVPGVYVKTSSFIGWINQIISVNNL*
BS14085.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mas-PB | 1047 | CG15002-PB | 1..1047 | 1..1047 | 5630 | 100 | Plus |
| mas-PC | 1046 | CG15002-PC | 1..1046 | 1..1047 | 5608 | 99.8 | Plus |
| Np-PB | 1041 | CG34350-PB | 154..1039 | 101..1042 | 503 | 24.2 | Plus |
| Np-PA | 1041 | CG34350-PA | 154..1039 | 101..1042 | 503 | 24.2 | Plus |
| Sb-PB | 787 | CG4316-PB | 340..782 | 580..1038 | 455 | 30.3 | Plus |
| Np-PB | 1041 | CG34350-PB | 319..686 | 81..457 | 193 | 24.9 | Plus |
| Np-PA | 1041 | CG34350-PA | 319..686 | 81..457 | 193 | 24.9 | Plus |
| Np-PB | 1041 | CG34350-PB | 502..701 | 95..308 | 185 | 31.8 | Plus |
| Np-PA | 1041 | CG34350-PA | 502..701 | 95..308 | 185 | 31.8 | Plus |
| Np-PB | 1041 | CG34350-PB | 510..776 | 79..307 | 169 | 27.5 | Plus |
| Np-PA | 1041 | CG34350-PA | 510..776 | 79..307 | 169 | 27.5 | Plus |
