Clone Sequence Records
BS14086.3prime Sequence
495 bp (461 high quality bases) assembled on 2006-10-13
> BS14086.3prime
ATGGTCTAGAAAGCTTTTACGTGAACAGATCCAATTCCAAATCCGCCGTA
GCATGCGCCTTGCCACCCACACCTGCTATGGCCACAGATTCCGGATTGAA
GTAAACGTTGGTGGGTACACCCTTCTTCAGATACGCCTTGGAAATGGGCG
TGGATATGGCAGTGCCACCATTACCAACCACCGCTTTGGAATGAGGTTCC
AGGATGAGTGCAGCCTGCTTGCGTCCCTGGATCGCCTGAGCCTGCTCCGG
TCTATAGGGCAGGAAGTAGTTTCCAAATGGGATCTGCGGAAAGTTGCCGG
AACTCGTGCTGGTCTTTCCGGTGGCCTCAACCTTCAAGGGAACTCTTCCA
CCCGCCTGCTTTCTCATTTTTTGTGGGGCAATCGCCTTCTTCAACTGCTG
CTTGGCGGAGCGGGGTGACCCAGAAGTGGAGATCACTAGCTTGCCCGGCA
CCGGAACGATCTCTTCAATCACATACTCGGGGTTTATTTTGCTGA
BS14086.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-PC | 948 | CG11905-RC | 470..948 | 495..17 | 2370 | 99.7 | Minus |
CG11905-PE | 948 | CG11905-RE | 470..948 | 495..17 | 2370 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-RH | 1480 | CG11905-RH | 739..1218 | 495..16 | 2385 | 99.8 | Minus |
CG11905-RE | 1539 | CG11905-RE | 798..1277 | 495..16 | 2385 | 99.8 | Minus |
CG11905-RC | 1357 | CG11905-RC | 616..1095 | 495..16 | 2385 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16930116..16930595 | 16..495 | 2385 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:03:25 has no hits.
BS14086.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:37 Download gff for
BS14086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-PE | 471..948 | 17..494 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:24 Download gff for
BS14086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RC | 617..1095 | 16..494 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:20 Download gff for
BS14086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RC | 617..1095 | 16..494 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:20 Download gff for
BS14086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16930116..16930594 | 16..494 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:24 Download gff for
BS14086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16923216..16923694 | 16..494 | 99 | | Plus |
BS14086.5prime Sequence
610 bp (537 high quality bases) assembled on 2006-10-13
> BS14086.5prime
GAAGTTATCAGTCGACATGCGCTTTCTTGTTCTCTCAACACTGCTTCTGG
CCTCTTTGGCACTTGGCCAGGCTCAACAGCACGGTGGACTGGCCGTCGAT
GCCTACTGGCGCACAACCAATATCGAGGCCTGGCCACCAGGAGCACCCGT
CGCAGAGAAGTCCGGAAAACTCATTGCAGGATCTGCTCCGGCCCAGGACC
TCACGCCCTATGGAGCCTATCAACCCGTGCTGTTCAGTGCCCCATACTAC
GCCGCCTACAATCTGCCCCTGGCCTATGTGGTGCAACCCACCATCGCCAG
TGCCGATCAAGCCACCATAGCCAGTGCAACAACCACAACGACCACTACCA
CAACTGGCCGACCCGAAAGCTTAGCTGATGACAGCTCCAGCGAGTTGGAG
AAACCAGAAAAGCTACAGGCTCTGCCTGCAGTGAAGACCCGAACCACTGG
GGATCTGAAGAGTGATGTGGGTCTCCGCTCAGCGGTCAGCAAAATAAACC
CCGAGTATGTGATCGAAGAGATCGTTCCGGTGCCGGGCAAGCTAATGATC
TCCACTTCTGGGTCACCCCGCTCCGCCAAGCAGCAGTTGAAGAAAGCGAT
TGCCCCACAA
BS14086.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-PC | 948 | CG11905-RC | 1..594 | 17..610 | 2920 | 99.6 | Plus |
CG11905-PE | 948 | CG11905-RE | 1..594 | 17..610 | 2920 | 99.6 | Plus |
CG11905-PB | 1212 | CG11905-RB | 1..83 | 17..99 | 415 | 100 | Plus |
CG11905-PF | 1212 | CG11905-RF | 1..83 | 17..99 | 415 | 100 | Plus |
CG11905-PA | 1824 | CG11905-RA | 1..83 | 17..99 | 415 | 100 | Plus |
CG11905-PG | 1824 | CG11905-RG | 1..83 | 17..99 | 415 | 100 | Plus |
CG11905-PD | 1824 | CG11905-RD | 1..83 | 17..99 | 415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-RH | 1480 | CG11905-RH | 270..863 | 17..610 | 2940 | 99.7 | Plus |
CG11905-RE | 1539 | CG11905-RE | 329..922 | 17..610 | 2940 | 99.7 | Plus |
CG11905-RC | 1357 | CG11905-RC | 147..740 | 17..610 | 2940 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16930471..16930981 | 610..100 | 2525 | 99.6 | Minus |
3L | 28110227 | 3L | 16933293..16933360 | 99..32 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:10:45 has no hits.
BS14086.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:37 Download gff for
BS14086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-PE | 1..592 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:30 Download gff for
BS14086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RC | 141..738 | 11..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:09 Download gff for
BS14086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RC | 141..738 | 11..608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:09 Download gff for
BS14086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16930473..16930981 | 100..608 | 99 | <- | Minus |
3L | 16933293..16933360 | 32..99 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:30 Download gff for
BS14086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16923573..16924081 | 100..608 | 99 | <- | Minus |
arm_3L | 16926393..16926460 | 32..99 | 100 | <- | Minus |
BS14086.complete Sequence
980 bp assembled on 2006-11-01
GenBank Submission: FJ637598
> BS14086.complete
GAAGTTATCAGTCGACATGCGCTTTCTTGTTCTCTCAACACTGCTTCTGG
CCTCTTTGGCACTTGGCCAGGCTCAACAGCACGGTGGACTGGCCGTCGAT
GCCTACTGGCGCACAACCAATATCGAGGCCTGGCCACCAGGAGCACCCGT
CGCAGAGAAGTCCGGAAAACTCATTGCAGGATCTGCTCCGGCCCAGGACC
TCACGCCCTATGGAGCCTATCAACCCGTGCTGTTCAGTGCCCCATACTAC
GCCGCCTACAATCTGCCCCTGGCCTATGTGGTGCAACCCACCATCGCCAG
TGCCGATCAAGCCACCATAGCCAGTGCAACAACCACAACGACCACTACCA
CAACTGGCCGACCCGAAAGCTTAGCTGATGACAGCTCCAGCGAGTTGGAG
AAACCAGAAAAGCTACAGGCTCTGCCTGCAGTGAAGACCCGAACCACTGG
GGATCTGAAGAGTGATGTGGGTCTCCGCTCAGCGGTCAGCAAAATAAACC
CCGAGTATGTGATCGAAGAGATCGTTCCGGTGCCGGGCAAGCTAGTGATC
TCCACTTCTGGGTCACCCCGCTCCGCCAAGCAGCAGTTGAAGAAGGCGAT
TGCCCCACAAAAAATGAGAAAGCAGGCGGGTGGAAGAGTTCCCTTGAAGG
TTGAGGCCACCGGAAAGACCAGCACGAGTTCCGGCAACTTTCCGCAGATC
CCATTTGGAAACTACTTCCTGCCCTATAGACCGGAGCAGGCTCAGGCGAT
CCAGGGACGCAAGCAGGCTGCACTCATCCTGGAACCTCATTCCAAAGCGG
TGGTTGGTAATGGTGGCACTGCCATATCCACGCCCATTTCCAAGGCGTAT
CTGAAGAAGGGTGTACCCACCAACGTTTACTTCAATCCGGAATCTGTGGC
CATAGCAGGTGTGGGTGGCAAGGCGCATGCTACGGCGGATTTGGAATTGG
ATCTGTTCACGTAAAAGCTTTCTAGACCAT
BS14086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-RH | 948 | CG11905-PH | 1..948 | 17..964 | 4740 | 100 | Plus |
CG11905-RE | 948 | CG11905-PE | 1..948 | 17..964 | 4740 | 100 | Plus |
CG11905-RC | 948 | CG11905-PC | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-RH | 1480 | CG11905-RH | 270..1218 | 17..965 | 4745 | 100 | Plus |
CG11905-RE | 1539 | CG11905-RE | 329..1277 | 17..965 | 4745 | 100 | Plus |
CG11905-RC | 1357 | CG11905-RC | 147..1095 | 17..965 | 4745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16930116..16930981 | 965..100 | 4330 | 100 | Minus |
3L | 28110227 | 3L | 16933293..16933360 | 99..32 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:14:48 has no hits.
BS14086.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:06 Download gff for
BS14086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RH | 1..948 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:23 Download gff for
BS14086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RH | 260..1214 | 11..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:43 Download gff for
BS14086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RC | 147..1092 | 17..962 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:06 Download gff for
BS14086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RH | 260..1214 | 11..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:46 Download gff for
BS14086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RC | 147..1092 | 17..962 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:46 Download gff for
BS14086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16930119..16930981 | 100..962 | 100 | <- | Minus |
3L | 16933293..16933360 | 32..99 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:43 Download gff for
BS14086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16923219..16924081 | 100..962 | 100 | <- | Minus |
arm_3L | 16926393..16926460 | 32..99 | 100 | <- | Minus |
BS14086.pep Sequence
Translation from 16 to 963
> BS14086.pep
MRFLVLSTLLLASLALGQAQQHGGLAVDAYWRTTNIEAWPPGAPVAEKSG
KLIAGSAPAQDLTPYGAYQPVLFSAPYYAAYNLPLAYVVQPTIASADQAT
IASATTTTTTTTTGRPESLADDSSSELEKPEKLQALPAVKTRTTGDLKSD
VGLRSAVSKINPEYVIEEIVPVPGKLVISTSGSPRSAKQQLKKAIAPQKM
RKQAGGRVPLKVEATGKTSTSSGNFPQIPFGNYFLPYRPEQAQAIQGRKQ
AALILEPHSKAVVGNGGTAISTPISKAYLKKGVPTNVYFNPESVAIAGVG
GKAHATADLELDLFT*
BS14086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-PH | 315 | CG11905-PH | 1..315 | 1..315 | 1589 | 100 | Plus |
CG11905-PE | 315 | CG11905-PE | 1..315 | 1..315 | 1589 | 100 | Plus |
CG11905-PC | 315 | CG11905-PC | 1..315 | 1..315 | 1589 | 100 | Plus |