Clone BS14086 Report

Search the DGRC for BS14086

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG11905-RC
Protein status:BS14086.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14086.3prime Sequence

495 bp (461 high quality bases) assembled on 2006-10-13

> BS14086.3prime
ATGGTCTAGAAAGCTTTTACGTGAACAGATCCAATTCCAAATCCGCCGTA
GCATGCGCCTTGCCACCCACACCTGCTATGGCCACAGATTCCGGATTGAA
GTAAACGTTGGTGGGTACACCCTTCTTCAGATACGCCTTGGAAATGGGCG
TGGATATGGCAGTGCCACCATTACCAACCACCGCTTTGGAATGAGGTTCC
AGGATGAGTGCAGCCTGCTTGCGTCCCTGGATCGCCTGAGCCTGCTCCGG
TCTATAGGGCAGGAAGTAGTTTCCAAATGGGATCTGCGGAAAGTTGCCGG
AACTCGTGCTGGTCTTTCCGGTGGCCTCAACCTTCAAGGGAACTCTTCCA
CCCGCCTGCTTTCTCATTTTTTGTGGGGCAATCGCCTTCTTCAACTGCTG
CTTGGCGGAGCGGGGTGACCCAGAAGTGGAGATCACTAGCTTGCCCGGCA
CCGGAACGATCTCTTCAATCACATACTCGGGGTTTATTTTGCTGA

BS14086.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-PC 948 CG11905-RC 470..948 495..17 2370 99.7 Minus
CG11905-PE 948 CG11905-RE 470..948 495..17 2370 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-RH 1480 CG11905-RH 739..1218 495..16 2385 99.8 Minus
CG11905-RE 1539 CG11905-RE 798..1277 495..16 2385 99.8 Minus
CG11905-RC 1357 CG11905-RC 616..1095 495..16 2385 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16930116..16930595 16..495 2385 99.8 Plus
Blast to na_te.dros performed on 2015-02-10 18:03:25 has no hits.

BS14086.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:37 Download gff for BS14086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11905-PE 471..948 17..494 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:24 Download gff for BS14086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11905-RC 617..1095 16..494 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:20 Download gff for BS14086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11905-RC 617..1095 16..494 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:20 Download gff for BS14086.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16930116..16930594 16..494 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:24 Download gff for BS14086.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16923216..16923694 16..494 99   Plus

BS14086.5prime Sequence

610 bp (537 high quality bases) assembled on 2006-10-13

> BS14086.5prime
GAAGTTATCAGTCGACATGCGCTTTCTTGTTCTCTCAACACTGCTTCTGG
CCTCTTTGGCACTTGGCCAGGCTCAACAGCACGGTGGACTGGCCGTCGAT
GCCTACTGGCGCACAACCAATATCGAGGCCTGGCCACCAGGAGCACCCGT
CGCAGAGAAGTCCGGAAAACTCATTGCAGGATCTGCTCCGGCCCAGGACC
TCACGCCCTATGGAGCCTATCAACCCGTGCTGTTCAGTGCCCCATACTAC
GCCGCCTACAATCTGCCCCTGGCCTATGTGGTGCAACCCACCATCGCCAG
TGCCGATCAAGCCACCATAGCCAGTGCAACAACCACAACGACCACTACCA
CAACTGGCCGACCCGAAAGCTTAGCTGATGACAGCTCCAGCGAGTTGGAG
AAACCAGAAAAGCTACAGGCTCTGCCTGCAGTGAAGACCCGAACCACTGG
GGATCTGAAGAGTGATGTGGGTCTCCGCTCAGCGGTCAGCAAAATAAACC
CCGAGTATGTGATCGAAGAGATCGTTCCGGTGCCGGGCAAGCTAATGATC
TCCACTTCTGGGTCACCCCGCTCCGCCAAGCAGCAGTTGAAGAAAGCGAT
TGCCCCACAA

BS14086.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-PC 948 CG11905-RC 1..594 17..610 2920 99.6 Plus
CG11905-PE 948 CG11905-RE 1..594 17..610 2920 99.6 Plus
CG11905-PB 1212 CG11905-RB 1..83 17..99 415 100 Plus
CG11905-PF 1212 CG11905-RF 1..83 17..99 415 100 Plus
CG11905-PA 1824 CG11905-RA 1..83 17..99 415 100 Plus
CG11905-PG 1824 CG11905-RG 1..83 17..99 415 100 Plus
CG11905-PD 1824 CG11905-RD 1..83 17..99 415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-RH 1480 CG11905-RH 270..863 17..610 2940 99.7 Plus
CG11905-RE 1539 CG11905-RE 329..922 17..610 2940 99.7 Plus
CG11905-RC 1357 CG11905-RC 147..740 17..610 2940 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16930471..16930981 610..100 2525 99.6 Minus
3L 28110227 3L 16933293..16933360 99..32 340 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:10:45 has no hits.

BS14086.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:37 Download gff for BS14086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11905-PE 1..592 17..608 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:30 Download gff for BS14086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11905-RC 141..738 11..608 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:09 Download gff for BS14086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11905-RC 141..738 11..608 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:09 Download gff for BS14086.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16930473..16930981 100..608 99 <- Minus
3L 16933293..16933360 32..99 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:30 Download gff for BS14086.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16923573..16924081 100..608 99 <- Minus
arm_3L 16926393..16926460 32..99 100 <- Minus

BS14086.complete Sequence

980 bp assembled on 2006-11-01

GenBank Submission: FJ637598

> BS14086.complete
GAAGTTATCAGTCGACATGCGCTTTCTTGTTCTCTCAACACTGCTTCTGG
CCTCTTTGGCACTTGGCCAGGCTCAACAGCACGGTGGACTGGCCGTCGAT
GCCTACTGGCGCACAACCAATATCGAGGCCTGGCCACCAGGAGCACCCGT
CGCAGAGAAGTCCGGAAAACTCATTGCAGGATCTGCTCCGGCCCAGGACC
TCACGCCCTATGGAGCCTATCAACCCGTGCTGTTCAGTGCCCCATACTAC
GCCGCCTACAATCTGCCCCTGGCCTATGTGGTGCAACCCACCATCGCCAG
TGCCGATCAAGCCACCATAGCCAGTGCAACAACCACAACGACCACTACCA
CAACTGGCCGACCCGAAAGCTTAGCTGATGACAGCTCCAGCGAGTTGGAG
AAACCAGAAAAGCTACAGGCTCTGCCTGCAGTGAAGACCCGAACCACTGG
GGATCTGAAGAGTGATGTGGGTCTCCGCTCAGCGGTCAGCAAAATAAACC
CCGAGTATGTGATCGAAGAGATCGTTCCGGTGCCGGGCAAGCTAGTGATC
TCCACTTCTGGGTCACCCCGCTCCGCCAAGCAGCAGTTGAAGAAGGCGAT
TGCCCCACAAAAAATGAGAAAGCAGGCGGGTGGAAGAGTTCCCTTGAAGG
TTGAGGCCACCGGAAAGACCAGCACGAGTTCCGGCAACTTTCCGCAGATC
CCATTTGGAAACTACTTCCTGCCCTATAGACCGGAGCAGGCTCAGGCGAT
CCAGGGACGCAAGCAGGCTGCACTCATCCTGGAACCTCATTCCAAAGCGG
TGGTTGGTAATGGTGGCACTGCCATATCCACGCCCATTTCCAAGGCGTAT
CTGAAGAAGGGTGTACCCACCAACGTTTACTTCAATCCGGAATCTGTGGC
CATAGCAGGTGTGGGTGGCAAGGCGCATGCTACGGCGGATTTGGAATTGG
ATCTGTTCACGTAAAAGCTTTCTAGACCAT

BS14086.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-RH 948 CG11905-PH 1..948 17..964 4740 100 Plus
CG11905-RE 948 CG11905-PE 1..948 17..964 4740 100 Plus
CG11905-RC 948 CG11905-PC 1..948 17..964 4740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-RH 1480 CG11905-RH 270..1218 17..965 4745 100 Plus
CG11905-RE 1539 CG11905-RE 329..1277 17..965 4745 100 Plus
CG11905-RC 1357 CG11905-RC 147..1095 17..965 4745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16930116..16930981 965..100 4330 100 Minus
3L 28110227 3L 16933293..16933360 99..32 340 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:14:48 has no hits.

BS14086.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:06 Download gff for BS14086.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RH 1..948 17..964 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:23 Download gff for BS14086.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RH 260..1214 11..965 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:43 Download gff for BS14086.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RC 147..1092 17..962 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:06 Download gff for BS14086.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RH 260..1214 11..965 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:46 Download gff for BS14086.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RC 147..1092 17..962 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:46 Download gff for BS14086.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16930119..16930981 100..962 100 <- Minus
3L 16933293..16933360 32..99 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:43 Download gff for BS14086.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16923219..16924081 100..962 100 <- Minus
arm_3L 16926393..16926460 32..99 100 <- Minus

BS14086.pep Sequence

Translation from 16 to 963

> BS14086.pep
MRFLVLSTLLLASLALGQAQQHGGLAVDAYWRTTNIEAWPPGAPVAEKSG
KLIAGSAPAQDLTPYGAYQPVLFSAPYYAAYNLPLAYVVQPTIASADQAT
IASATTTTTTTTTGRPESLADDSSSELEKPEKLQALPAVKTRTTGDLKSD
VGLRSAVSKINPEYVIEEIVPVPGKLVISTSGSPRSAKQQLKKAIAPQKM
RKQAGGRVPLKVEATGKTSTSSGNFPQIPFGNYFLPYRPEQAQAIQGRKQ
AALILEPHSKAVVGNGGTAISTPISKAYLKKGVPTNVYFNPESVAIAGVG
GKAHATADLELDLFT*

BS14086.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-PH 315 CG11905-PH 1..315 1..315 1589 100 Plus
CG11905-PE 315 CG11905-PE 1..315 1..315 1589 100 Plus
CG11905-PC 315 CG11905-PC 1..315 1..315 1589 100 Plus