Clone BS14087 Report

Search the DGRC for BS14087

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG42678-RE
Protein status:BS14087.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14087.3prime Sequence

642 bp (595 high quality bases) assembled on 2006-10-13

> BS14087.3prime
ATGGTCTAGAAAGCTTTCAGTAGTTTTCCACATCCACATCGGGCGTGGGT
TCGCGCAGCTTGCGGCGGGAGCGGATCACATTGCTGGAGCTGCTGGAGCT
CCTGGCGCCCTCAATATCGTTGTGTTTCTGGCCGCGTTTGCCTGCAGCCT
TGGCAGTGCTAGCAGCCCGACGTGGTTGTGCCTTCCGGACGGGCATGTCC
CGGAGACGGGCTGCTCCGGCATCGCCCAGGGGATCATCATCGAACTCCGC
CTCCTCGCTAACCTCTCGAATAACCAGTCGCTTGGTCTCGGTCCTCGGCT
CGTAGATCGTCTCTGTGTAGCTCTCGATGCTGCTCAAGGAACTGGCTCGC
GGCAGCCAGTTTTCCGTGCTGTCCATCGTATCCTGGCCCCTGTACAGCTC
ATCGGCCGAATGGGAGTTTTGCAGGCCGCGTCCATGGCCAGATGGCGCCG
TAGTCAGCGCGTAGGTCTTGATGGCCGTCTGCATGAGGACATTGGTGGCA
TAGTTTACTCCCTTGGAGCCCAGCTGCAGGACCGCCGAATAGCCGCGCTC
TTTGGCCTGATTCACGTACTCGTCGATCTCCTGTTCGTGGCGCGTCAACA
TAGGATGCACGAATTTGCGATACAAAGTCGAACTGCCCTTTG

BS14087.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG30193-PF 867 CG30193-RF 242..867 642..17 3130 100 Minus
CG30193-PA 867 CG30193-RA 242..867 642..17 3130 100 Minus
CG30193-PB 867 CG30193-RB 242..867 642..17 3130 100 Minus
CG30193-PC 867 CG30193-RC 242..867 642..17 3130 100 Minus
CG30193-PD 1308 CG30193-RD 683..1308 642..17 3130 100 Minus
CG30193-PE 867 CG30193-RE 242..867 642..17 3130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-RG 2534 CG42678-RG 716..1342 642..16 3135 100 Minus
CG42678-RE 1469 CG42678-RE 652..1278 642..16 3135 100 Minus
CG42678-RD 1573 CG42678-RD 756..1382 642..16 3135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22929086..22929538 468..16 2265 100 Minus
2R 25286936 2R 22927513..22927629 583..467 585 100 Minus
2R 25286936 2R 22927386..22927448 642..580 315 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:01:50 has no hits.

BS14087.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:37 Download gff for BS14087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30193-PE 242..867 17..642 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:48 Download gff for BS14087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42678-RD 756..1390 7..642 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:04 Download gff for BS14087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42678-RD 756..1390 7..642 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:04 Download gff for BS14087.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22927386..22927447 581..642 100 -> Minus
2R 22927516..22927629 467..580 100 -> Minus
2R 22929088..22929546 7..466 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:48 Download gff for BS14087.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18814909..18814970 581..642 100 -> Minus
arm_2R 18815039..18815152 467..580 100 -> Minus
arm_2R 18816611..18817069 7..466 99   Minus

BS14087.5prime Sequence

618 bp (554 high quality bases) assembled on 2006-10-13

> BS14087.5prime
GAAGTTATCAGTCGACATGATCAGCAGCCTGTTTTCGCGGCTTATAATAT
TGTTCTGCGGCACCCTGTACCCGGCATATGCCTCATACAAGGCCGTCAGG
ACCAAGGATGTCAAGGAATATGTTAAATGGATGATGTACTGGATTGTCTT
TGCATTTTTCACCTGCATAGAAACATTCACGGACATATTTATCTCCTGGC
TACCGTTCTACTACGAGGTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCG
CCGGCCACAAAGGGCAGTTCGACTTTGTATCGCAAATTCGTGCATCCTAT
GTTGACGCGCCACGAACAGGAGATCGACGAGTACGTGAATCAGGCCAAAG
AGCGCGGCTATTCGGCGGTCCTGCAGCTGGGCTCCAAGGGAGTAAACTAT
GCCACCAATGTCCTCATGCAGACGGCCATCAAGACCTACGCGCTGACTAC
GGCGCCATCTGGCCATGGACGCGGCCTGCAAAACTCCCATTCGGCCGATG
AGCTGTACAGGGGCCAGGATACGATGGACAGCACGGAAAACTGGCTGCCG
CGAGCCAGTTCCTTGAGCAACATCGAGAGCTACACAGAGACGATCTACGA
GCCGAGGACCGAAACCAA

BS14087.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG30193-PF 867 CG30193-RF 1..602 17..618 2960 99.6 Plus
CG30193-PA 867 CG30193-RA 1..602 17..618 2960 99.6 Plus
CG30193-PB 867 CG30193-RB 1..602 17..618 2960 99.6 Plus
CG30193-PC 867 CG30193-RC 1..602 17..618 2960 99.6 Plus
CG30193-PE 867 CG30193-RE 1..602 17..618 2960 99.6 Plus
CG30193-PD 1308 CG30193-RD 474..1043 49..618 2800 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-RG 2534 CG42678-RG 475..1076 17..618 2980 99.7 Plus
CG42678-RE 1469 CG42678-RE 411..1012 17..618 2980 99.7 Plus
CG42678-RD 1573 CG42678-RD 547..1116 49..618 2820 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22927250..22927448 122..320 995 100 Plus
2R 25286936 2R 22929086..22929272 432..618 905 98.9 Plus
2R 25286936 2R 22927513..22927629 317..433 585 100 Plus
2R 25286936 2R 22927099..22927173 49..123 375 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:52:23 has no hits.

BS14087.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:38 Download gff for BS14087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30193-PE 1..600 17..616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:12 Download gff for BS14087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42678-RE 406..1010 12..616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:07:02 Download gff for BS14087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42678-RE 406..1010 12..616 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:07:02 Download gff for BS14087.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22925576..22925612 12..48 94 -> Plus
2R 22927099..22927171 49..121 100 -> Plus
2R 22927250..22927447 122..319 100 -> Plus
2R 22927516..22927629 320..433 100 -> Plus
2R 22929088..22929270 434..616 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:12 Download gff for BS14087.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18813099..18813135 12..48 94 -> Plus
arm_2R 18814622..18814694 49..121 100 -> Plus
arm_2R 18814773..18814970 122..319 100 -> Plus
arm_2R 18815039..18815152 320..433 100 -> Plus
arm_2R 18816611..18816793 434..616 98   Plus

BS14087.complete Sequence

899 bp assembled on 2006-11-01

GenBank Submission: FJ637599

> BS14087.complete
GAAGTTATCAGTCGACATGATCAGCAGCCTGTTTTCGCGGCTTATAATAT
TGTTCTGCGGCACCCTGTACCCGGCATATGCCTCATACAAGGCCGTCAGG
ACCAAGGATGTCAAGGAATATGTTAAATGGATGATGTACTGGATTGTCTT
TGCATTTTTCACCTGCATAGAAACATTCACGGACATATTTATCTCCTGGC
TACCGTTCTACTACGAGGTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCG
CCGGCCACAAAGGGCAGTTCGACTTTGTATCGCAAATTCGTGCATCCTAT
GTTGACGCGCCACGAACAGGAGATCGACGAGTACGTGAATCAGGCCAAAG
AGCGCGGCTATTCGGCGGTCCTGCAGCTGGGCTCCAAGGGAGTAAACTAT
GCCACCAATGTCCTCATGCAGACGGCCATCAAGACCTACGCGCTGACTAC
GGCGCCATCTGGCCATGGACGCGGCCTGCAAAACTCCCATTCGGCCGATG
AGCTGTACAGGGGCCAGGATACGATGGACAGCACGGAAAACTGGCTGCCG
CGAGCCAGTTCCTTGAGCAGCATCGAGAGCTACACAGAGACGATCTACGA
GCCGAGGACCGAGACCAAGCGACTGGTTATTCGAGAGGTTAGCGAGGAGG
CGGAGTTCGATGATGATCCCCTGGGCGATGCCGGAGCAGCCCGTCTCCGG
GACATGCCCGTCCGGAAGGCACAACCACGTCGGGCTGCTAGCACTGCCAA
GGCTGCAGGCAAACGCGGCCAGAAACACAACGATATTGAGGGCGCCAGGA
GCTCCAGCAGCTCCAGCAATGTGATCCGCTCCCGCCGCAAGCTGCGCGAA
CCCACGCCCGATGTGGATGTGGAAAACTACTGAAAGCTTTCTAGACCAT

BS14087.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-RG 867 CG42678-PG 1..867 17..883 4335 100 Plus
CG42678-RE 867 CG42678-PE 1..867 17..883 4335 100 Plus
CG42678-RD 1308 CG42678-PD 474..1308 49..883 4175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-RG 2534 CG42678-RG 475..1342 17..884 4340 100 Plus
CG42678-RE 1469 CG42678-RE 411..1278 17..884 4340 100 Plus
CG42678-RD 1573 CG42678-RD 547..1382 49..884 4180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22929086..22929538 432..884 2265 100 Plus
2R 25286936 2R 22927250..22927448 122..320 995 100 Plus
2R 25286936 2R 22927513..22927629 317..433 585 100 Plus
2R 25286936 2R 22927099..22927173 49..123 375 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:53:36 has no hits.

BS14087.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:07 Download gff for BS14087.complete
Subject Subject Range Query Range Percent Splice Strand
CG30193-RB 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:24 Download gff for BS14087.complete
Subject Subject Range Query Range Percent Splice Strand
CG30193-RA 391..1271 12..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:05 Download gff for BS14087.complete
Subject Subject Range Query Range Percent Splice Strand
CG42678-RE 411..1276 17..882 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:08 Download gff for BS14087.complete
Subject Subject Range Query Range Percent Splice Strand
CG30193-RA 391..1271 12..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:24 Download gff for BS14087.complete
Subject Subject Range Query Range Percent Splice Strand
CG42678-RE 411..1276 17..882 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:24 Download gff for BS14087.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22925581..22925612 17..48 100 -> Plus
2R 22927099..22927171 49..121 100 -> Plus
2R 22927250..22927447 122..319 100 -> Plus
2R 22927516..22927629 320..433 100 -> Plus
2R 22929088..22929536 434..882 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:05 Download gff for BS14087.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18813104..18813135 17..48 100 -> Plus
arm_2R 18814622..18814694 49..121 100 -> Plus
arm_2R 18814773..18814970 122..319 100 -> Plus
arm_2R 18815039..18815152 320..433 100 -> Plus
arm_2R 18816611..18817059 434..882 100   Plus

BS14087.pep Sequence

Translation from 16 to 882

> BS14087.pep
MISSLFSRLIILFCGTLYPAYASYKAVRTKDVKEYVKWMMYWIVFAFFTC
IETFTDIFISWLPFYYEVKVALVFWLLSPATKGSSTLYRKFVHPMLTRHE
QEIDEYVNQAKERGYSAVLQLGSKGVNYATNVLMQTAIKTYALTTAPSGH
GRGLQNSHSADELYRGQDTMDSTENWLPRASSLSSIESYTETIYEPRTET
KRLVIREVSEEAEFDDDPLGDAGAARLRDMPVRKAQPRRAASTAKAAGKR
GQKHNDIEGARSSSSSSNVIRSRRKLREPTPDVDVENY*

BS14087.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-PG 288 CG30193-PG 1..288 1..288 1489 100 Plus
CG42678-PE 288 CG30193-PE 1..288 1..288 1489 100 Plus
CG42678-PD 435 CG30193-PD 159..435 12..288 1441 100 Plus
CG42678-PS 312 CG42678-PS 1..170 1..171 733 84.8 Plus
CG42678-PP 538 CG42678-PP 1..170 1..171 733 84.8 Plus