Clone Sequence Records
BS14087.3prime Sequence
642 bp (595 high quality bases) assembled on 2006-10-13
> BS14087.3prime
ATGGTCTAGAAAGCTTTCAGTAGTTTTCCACATCCACATCGGGCGTGGGT
TCGCGCAGCTTGCGGCGGGAGCGGATCACATTGCTGGAGCTGCTGGAGCT
CCTGGCGCCCTCAATATCGTTGTGTTTCTGGCCGCGTTTGCCTGCAGCCT
TGGCAGTGCTAGCAGCCCGACGTGGTTGTGCCTTCCGGACGGGCATGTCC
CGGAGACGGGCTGCTCCGGCATCGCCCAGGGGATCATCATCGAACTCCGC
CTCCTCGCTAACCTCTCGAATAACCAGTCGCTTGGTCTCGGTCCTCGGCT
CGTAGATCGTCTCTGTGTAGCTCTCGATGCTGCTCAAGGAACTGGCTCGC
GGCAGCCAGTTTTCCGTGCTGTCCATCGTATCCTGGCCCCTGTACAGCTC
ATCGGCCGAATGGGAGTTTTGCAGGCCGCGTCCATGGCCAGATGGCGCCG
TAGTCAGCGCGTAGGTCTTGATGGCCGTCTGCATGAGGACATTGGTGGCA
TAGTTTACTCCCTTGGAGCCCAGCTGCAGGACCGCCGAATAGCCGCGCTC
TTTGGCCTGATTCACGTACTCGTCGATCTCCTGTTCGTGGCGCGTCAACA
TAGGATGCACGAATTTGCGATACAAAGTCGAACTGCCCTTTG
BS14087.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30193-PF | 867 | CG30193-RF | 242..867 | 642..17 | 3130 | 100 | Minus |
CG30193-PA | 867 | CG30193-RA | 242..867 | 642..17 | 3130 | 100 | Minus |
CG30193-PB | 867 | CG30193-RB | 242..867 | 642..17 | 3130 | 100 | Minus |
CG30193-PC | 867 | CG30193-RC | 242..867 | 642..17 | 3130 | 100 | Minus |
CG30193-PD | 1308 | CG30193-RD | 683..1308 | 642..17 | 3130 | 100 | Minus |
CG30193-PE | 867 | CG30193-RE | 242..867 | 642..17 | 3130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42678-RG | 2534 | CG42678-RG | 716..1342 | 642..16 | 3135 | 100 | Minus |
CG42678-RE | 1469 | CG42678-RE | 652..1278 | 642..16 | 3135 | 100 | Minus |
CG42678-RD | 1573 | CG42678-RD | 756..1382 | 642..16 | 3135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22929086..22929538 | 468..16 | 2265 | 100 | Minus |
2R | 25286936 | 2R | 22927513..22927629 | 583..467 | 585 | 100 | Minus |
2R | 25286936 | 2R | 22927386..22927448 | 642..580 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:01:50 has no hits.
BS14087.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:37 Download gff for
BS14087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-PE | 242..867 | 17..642 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:48 Download gff for
BS14087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RD | 756..1390 | 7..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:04 Download gff for
BS14087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RD | 756..1390 | 7..642 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:04 Download gff for
BS14087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22927386..22927447 | 581..642 | 100 | -> | Minus |
2R | 22927516..22927629 | 467..580 | 100 | -> | Minus |
2R | 22929088..22929546 | 7..466 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:48 Download gff for
BS14087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18814909..18814970 | 581..642 | 100 | -> | Minus |
arm_2R | 18815039..18815152 | 467..580 | 100 | -> | Minus |
arm_2R | 18816611..18817069 | 7..466 | 99 | | Minus |
BS14087.5prime Sequence
618 bp (554 high quality bases) assembled on 2006-10-13
> BS14087.5prime
GAAGTTATCAGTCGACATGATCAGCAGCCTGTTTTCGCGGCTTATAATAT
TGTTCTGCGGCACCCTGTACCCGGCATATGCCTCATACAAGGCCGTCAGG
ACCAAGGATGTCAAGGAATATGTTAAATGGATGATGTACTGGATTGTCTT
TGCATTTTTCACCTGCATAGAAACATTCACGGACATATTTATCTCCTGGC
TACCGTTCTACTACGAGGTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCG
CCGGCCACAAAGGGCAGTTCGACTTTGTATCGCAAATTCGTGCATCCTAT
GTTGACGCGCCACGAACAGGAGATCGACGAGTACGTGAATCAGGCCAAAG
AGCGCGGCTATTCGGCGGTCCTGCAGCTGGGCTCCAAGGGAGTAAACTAT
GCCACCAATGTCCTCATGCAGACGGCCATCAAGACCTACGCGCTGACTAC
GGCGCCATCTGGCCATGGACGCGGCCTGCAAAACTCCCATTCGGCCGATG
AGCTGTACAGGGGCCAGGATACGATGGACAGCACGGAAAACTGGCTGCCG
CGAGCCAGTTCCTTGAGCAACATCGAGAGCTACACAGAGACGATCTACGA
GCCGAGGACCGAAACCAA
BS14087.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30193-PF | 867 | CG30193-RF | 1..602 | 17..618 | 2960 | 99.6 | Plus |
CG30193-PA | 867 | CG30193-RA | 1..602 | 17..618 | 2960 | 99.6 | Plus |
CG30193-PB | 867 | CG30193-RB | 1..602 | 17..618 | 2960 | 99.6 | Plus |
CG30193-PC | 867 | CG30193-RC | 1..602 | 17..618 | 2960 | 99.6 | Plus |
CG30193-PE | 867 | CG30193-RE | 1..602 | 17..618 | 2960 | 99.6 | Plus |
CG30193-PD | 1308 | CG30193-RD | 474..1043 | 49..618 | 2800 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:52:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42678-RG | 2534 | CG42678-RG | 475..1076 | 17..618 | 2980 | 99.7 | Plus |
CG42678-RE | 1469 | CG42678-RE | 411..1012 | 17..618 | 2980 | 99.7 | Plus |
CG42678-RD | 1573 | CG42678-RD | 547..1116 | 49..618 | 2820 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:52:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22927250..22927448 | 122..320 | 995 | 100 | Plus |
2R | 25286936 | 2R | 22929086..22929272 | 432..618 | 905 | 98.9 | Plus |
2R | 25286936 | 2R | 22927513..22927629 | 317..433 | 585 | 100 | Plus |
2R | 25286936 | 2R | 22927099..22927173 | 49..123 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:52:23 has no hits.
BS14087.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:38 Download gff for
BS14087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-PE | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:12 Download gff for
BS14087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RE | 406..1010 | 12..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:07:02 Download gff for
BS14087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RE | 406..1010 | 12..616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:07:02 Download gff for
BS14087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22925576..22925612 | 12..48 | 94 | -> | Plus |
2R | 22927099..22927171 | 49..121 | 100 | -> | Plus |
2R | 22927250..22927447 | 122..319 | 100 | -> | Plus |
2R | 22927516..22927629 | 320..433 | 100 | -> | Plus |
2R | 22929088..22929270 | 434..616 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:12 Download gff for
BS14087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18813099..18813135 | 12..48 | 94 | -> | Plus |
arm_2R | 18814622..18814694 | 49..121 | 100 | -> | Plus |
arm_2R | 18814773..18814970 | 122..319 | 100 | -> | Plus |
arm_2R | 18815039..18815152 | 320..433 | 100 | -> | Plus |
arm_2R | 18816611..18816793 | 434..616 | 98 | | Plus |
BS14087.complete Sequence
899 bp assembled on 2006-11-01
GenBank Submission: FJ637599
> BS14087.complete
GAAGTTATCAGTCGACATGATCAGCAGCCTGTTTTCGCGGCTTATAATAT
TGTTCTGCGGCACCCTGTACCCGGCATATGCCTCATACAAGGCCGTCAGG
ACCAAGGATGTCAAGGAATATGTTAAATGGATGATGTACTGGATTGTCTT
TGCATTTTTCACCTGCATAGAAACATTCACGGACATATTTATCTCCTGGC
TACCGTTCTACTACGAGGTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCG
CCGGCCACAAAGGGCAGTTCGACTTTGTATCGCAAATTCGTGCATCCTAT
GTTGACGCGCCACGAACAGGAGATCGACGAGTACGTGAATCAGGCCAAAG
AGCGCGGCTATTCGGCGGTCCTGCAGCTGGGCTCCAAGGGAGTAAACTAT
GCCACCAATGTCCTCATGCAGACGGCCATCAAGACCTACGCGCTGACTAC
GGCGCCATCTGGCCATGGACGCGGCCTGCAAAACTCCCATTCGGCCGATG
AGCTGTACAGGGGCCAGGATACGATGGACAGCACGGAAAACTGGCTGCCG
CGAGCCAGTTCCTTGAGCAGCATCGAGAGCTACACAGAGACGATCTACGA
GCCGAGGACCGAGACCAAGCGACTGGTTATTCGAGAGGTTAGCGAGGAGG
CGGAGTTCGATGATGATCCCCTGGGCGATGCCGGAGCAGCCCGTCTCCGG
GACATGCCCGTCCGGAAGGCACAACCACGTCGGGCTGCTAGCACTGCCAA
GGCTGCAGGCAAACGCGGCCAGAAACACAACGATATTGAGGGCGCCAGGA
GCTCCAGCAGCTCCAGCAATGTGATCCGCTCCCGCCGCAAGCTGCGCGAA
CCCACGCCCGATGTGGATGTGGAAAACTACTGAAAGCTTTCTAGACCAT
BS14087.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42678-RG | 867 | CG42678-PG | 1..867 | 17..883 | 4335 | 100 | Plus |
CG42678-RE | 867 | CG42678-PE | 1..867 | 17..883 | 4335 | 100 | Plus |
CG42678-RD | 1308 | CG42678-PD | 474..1308 | 49..883 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42678-RG | 2534 | CG42678-RG | 475..1342 | 17..884 | 4340 | 100 | Plus |
CG42678-RE | 1469 | CG42678-RE | 411..1278 | 17..884 | 4340 | 100 | Plus |
CG42678-RD | 1573 | CG42678-RD | 547..1382 | 49..884 | 4180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22929086..22929538 | 432..884 | 2265 | 100 | Plus |
2R | 25286936 | 2R | 22927250..22927448 | 122..320 | 995 | 100 | Plus |
2R | 25286936 | 2R | 22927513..22927629 | 317..433 | 585 | 100 | Plus |
2R | 25286936 | 2R | 22927099..22927173 | 49..123 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:53:36 has no hits.
BS14087.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:07 Download gff for
BS14087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-RB | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:24 Download gff for
BS14087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-RA | 391..1271 | 12..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:05 Download gff for
BS14087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RE | 411..1276 | 17..882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:08 Download gff for
BS14087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-RA | 391..1271 | 12..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:24 Download gff for
BS14087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RE | 411..1276 | 17..882 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:24 Download gff for
BS14087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22925581..22925612 | 17..48 | 100 | -> | Plus |
2R | 22927099..22927171 | 49..121 | 100 | -> | Plus |
2R | 22927250..22927447 | 122..319 | 100 | -> | Plus |
2R | 22927516..22927629 | 320..433 | 100 | -> | Plus |
2R | 22929088..22929536 | 434..882 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:05 Download gff for
BS14087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18813104..18813135 | 17..48 | 100 | -> | Plus |
arm_2R | 18814622..18814694 | 49..121 | 100 | -> | Plus |
arm_2R | 18814773..18814970 | 122..319 | 100 | -> | Plus |
arm_2R | 18815039..18815152 | 320..433 | 100 | -> | Plus |
arm_2R | 18816611..18817059 | 434..882 | 100 | | Plus |
BS14087.pep Sequence
Translation from 16 to 882
> BS14087.pep
MISSLFSRLIILFCGTLYPAYASYKAVRTKDVKEYVKWMMYWIVFAFFTC
IETFTDIFISWLPFYYEVKVALVFWLLSPATKGSSTLYRKFVHPMLTRHE
QEIDEYVNQAKERGYSAVLQLGSKGVNYATNVLMQTAIKTYALTTAPSGH
GRGLQNSHSADELYRGQDTMDSTENWLPRASSLSSIESYTETIYEPRTET
KRLVIREVSEEAEFDDDPLGDAGAARLRDMPVRKAQPRRAASTAKAAGKR
GQKHNDIEGARSSSSSSNVIRSRRKLREPTPDVDVENY*
BS14087.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42678-PG | 288 | CG30193-PG | 1..288 | 1..288 | 1489 | 100 | Plus |
CG42678-PE | 288 | CG30193-PE | 1..288 | 1..288 | 1489 | 100 | Plus |
CG42678-PD | 435 | CG30193-PD | 159..435 | 12..288 | 1441 | 100 | Plus |
CG42678-PS | 312 | CG42678-PS | 1..170 | 1..171 | 733 | 84.8 | Plus |
CG42678-PP | 538 | CG42678-PP | 1..170 | 1..171 | 733 | 84.8 | Plus |