Clone BS14088 Report

Search the DGRC for BS14088

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG6569-RA
Protein status:BS14088.pep: full length peptide match
Sequenced Size:1313

Clone Sequence Records

BS14088.complete Sequence

1313 bp assembled on 2009-12-07

GenBank Submission: KX800748

> BS14088.complete
GAAGTTATCAGTCGACATGACACAACACGAAAATCAGCAAGCCATTCTCA
GCAACTTTGTGCTGGAAATGTGTGAAGGAGTGGATCGACTGATGCGGGAT
CAGGCCGAACTGAAGGTTCACCTCAACGAAATTCTAAATGAGAACCGCCG
GCTGGACATCGAATTGGCCAAATGCAGGAGCATCTTGGTTAGCGGCGATT
ACCAGGAGCTCAAGCATCGCCTTCAACTCAGCAACAAGGCTTTGGACGCG
TCCAAGAAGCAGGTGGATGAGCTTATCAAGGAACGGAACAGCCTGAAAAC
CATGCATGACCTCTCCAAACAGACCATCGAAACCATGGAGATGGATCTTA
AGAATTATCGCGTCCAATTGAAAATGTCTGGAGATGACCAGGTCATACAG
CGGTACTCGAAGATCGTCAAAGTGCTGGAGGCAAAAGTTGAGGACCAGCA
GAAGGAGATACGCACGCAGGCGGAGACCATAAAGGCCCTGCACGATCACA
AGCAGCACAGCGGATTGCAACTCCAGCAGCTGCATGCTCAACTGCAGGAT
AGCGAGCAGAGTCAATCCAAGGTGTCCATCCTGCAGAAGCAGCTTAAGGA
GTACGAACTATCGCTGAGCCACACCCACAATTTGCTCATGGAGAGCACAA
GACGGGAAACCGCCGCCATGCGCAAGCTCGAGGAGGCTATCATACTCAGC
GAAGAGGCAAACAAGGAGAAAATAGATGCCACAAAGCTGGCCGAGACCTA
CAAGGAGGAGATGACCCACCTAGCCTCCAATATCGGTACCATAATGGATG
AGGCCTCCACACGCGTCGACGTTGAAGTGGGCCATCTGAAGAATATGCTC
AAGCAAAAGGACATTATAATTACCACCATAAAGGAGAAGCTGAAAAAACT
GGCTGTCGATCATAAGTCGGTGGTGCACATGCTGGAGACCCGGAGCAATC
GCCTGGAGCAAAAGTACAAGGAGGTGCTGAAGCAGAACGATAAGCTGGAG
GCCGAGTTGGAGGCAACTTGCCGGCGACTTGGCGAACTGGAGCGATCCGT
TACTGAAGCTTACGGTGGGGATGCCGAAGATGCCAGGATAAAAATGTACT
ATAAGTCTCAAATGGATCGCTGCATAATGGATCACAAGAAAATGAAGGAG
AAATACCGCGAGGGCATGGAGGACATCACGCAACGCTTCGAATCGGAAAT
TTACAAGTTAAGGGAGGAGAACTCCGTGCTGCTGGCGGAAAACGAACTGC
TTAAGAGCGGTGCCGCAGGCGATAGCTCCAAGCAGACTTCACGCTGAAAG
CTTTCTAGACCAT

BS14088.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-RA 1281 CG6569-PA 1..1281 17..1297 6405 100 Plus
CG6569-RB 1230 CG6569-PB 1..1230 68..1297 6150 100 Plus
CG6569-RC 408 CG6569-PC 1..376 17..392 1880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-RA 1428 CG6569-RA 77..1357 17..1297 6405 100 Plus
CG6569-RB 1492 CG6569-RB 174..1421 50..1297 6240 100 Plus
CG6569-RC 782 CG6569-RC 77..452 17..392 1880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21866767..21867266 889..390 2500 100 Minus
3R 32079331 3R 21867403..21867746 393..50 1720 100 Minus
3R 32079331 3R 21866243..21866450 1297..1090 1040 100 Minus
3R 32079331 3R 21866510..21866711 1089..888 1010 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:01:16 has no hits.

BS14088.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:33 Download gff for BS14088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 261..1540 17..1296 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:47 Download gff for BS14088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 77..1356 17..1296 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:05 Download gff for BS14088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 261..1540 17..1296 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:07 Download gff for BS14088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 77..1356 17..1296 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:07 Download gff for BS14088.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21867405..21867744 52..391 100 <- Minus
3R 21867809..21867843 17..51 100   Minus
3R 21866244..21866450 1090..1296 100 <- Minus
3R 21866510..21866709 890..1089 100 <- Minus
3R 21866767..21867264 392..889 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:47 Download gff for BS14088.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17691966..17692172 1090..1296 100 <- Minus
arm_3R 17692232..17692431 890..1089 100 <- Minus
arm_3R 17692489..17692986 392..889 100 <- Minus
arm_3R 17693127..17693466 52..391 100 <- Minus
arm_3R 17693531..17693565 17..51 100   Minus

BS14088.3prime Sequence

532 bp (478 high quality bases) assembled on 2006-10-13

> BS14088.3prime
ATGGTCTAGAAAGCTTTCAGCGTGAAGTCTGCTTGGAGCTATCGCCTGCG
GCACCGCTCTTAAGCAGTTCGTTTTCCGCCAGCAGCACGGAGTTCTCCTC
CCTTAACTTGTAAATTTCCGATTCGAAGCGTTGCGTGATGTCCTCCATGC
CCTCGCGGTATTTCTCCTTCATTTTCTTGTGATCCATTATGCAGCGATCC
ATTTGAGACTTATAGTACATTTTTATCCTGGCATCTTCGGCATCCCCACC
GTAAGCTTCAGTAACGGATCGCTCCAGTTCGCCAAGTCGCCGGCAAGTTG
CCTCCAACTCGGCCTCCAGCTTATCGTTCTGCTTCAGCACCTCCTTGTAC
TTTTGCTCCAGGCGATTGCTCCGGGTCTCCAGCATGTGCACCACCGACTT
ATGATCGACAGCCAGTTTTTTCAGCTTCTCCTTTATGGTGGTAATTATAA
TGTCCTTTTGCTTGAGCATATTCTTCAGATGGCCCACTTCAACGTCGACG
CGTGTGGAGGCCTCATCCATTATGGTACCGAT

BS14088.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-PA 1281 CG6569-RA 766..1281 532..17 2580 100 Minus
CG6569-PB 1230 CG6569-RB 715..1230 532..17 2580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-RB 1492 CG6569-RB 906..1421 532..17 2580 100 Minus
CG6569-RA 1428 CG6569-RA 842..1357 532..17 2580 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21866243..21866450 17..224 1040 100 Plus
3R 32079331 3R 21866510..21866711 225..426 1010 100 Plus
3R 32079331 3R 21866767..21866874 425..532 540 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:37:53 has no hits.

BS14088.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:38 Download gff for BS14088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6569-PB 715..1230 17..532 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:54 Download gff for BS14088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 842..1360 10..532 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:25:43 Download gff for BS14088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 842..1360 10..532 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:25:43 Download gff for BS14088.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21866239..21866450 10..224 98 <- Plus
3R 21866510..21866709 225..424 100 <- Plus
3R 21866767..21866874 425..532 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:54 Download gff for BS14088.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17691961..17692172 10..224 98 <- Plus
arm_3R 17692232..17692431 225..424 100 <- Plus
arm_3R 17692489..17692596 425..532 100   Plus

BS14088.5prime Sequence

595 bp (556 high quality bases) assembled on 2006-10-13

> BS14088.5prime
GAAGTTATCAGTCGACATGACACAACACGAAAATCAGCAAGCCATTCTCA
GCAACTTTGTGCTGGAAATGTGTGAAGGAGTGGATCGACTGATGCGGGAT
CAGGCCGAACTGAAGGTTCACCTCAACGAAATTCTAAATGAGAACCGCCG
GCTGGACATCGAATTGGCCAAATGCAGGAGCATCTTGGTTAGCGGCGATT
ACCAGGAGCTCAAGCATCGCCTTCAACTCAGCAACAAGGCTTTGGACGCG
TCCAAGAAGCAGGTGGATGAGCTTATCAAGGAACGGAACAGCCTGAAAAC
CATGCATGACCTCTCCAAACAGACCATCGAAACCATGGAGATGGATCTTA
AGAATTATCGCGTCCAATTGAAAATGTCTGGAGATGACCAGGTCATACAG
CGGTACTCGAAGATCGTCAAAGTGCTGGAGGCAAAAGTTGAGGACCAGCA
GAAGGAGATACGCACGCAGGCGGAGACCATAAAGGCCCTGCACGATCACA
AGCAGCACAGCGGATTGCAACTCCAGCAGCTGCATGCTCAACTGCAGGAT
AGCGAGCAGAGTCAATCCAAGGTGTCCATCCTGCAGAAGCAGCTT

BS14088.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-PA 1281 CG6569-RA 1..579 17..595 2895 100 Plus
CG6569-PB 1230 CG6569-RB 1..528 68..595 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-RA 1428 CG6569-RA 77..655 17..595 2895 100 Plus
CG6569-RB 1492 CG6569-RB 174..719 50..595 2730 100 Plus
CG6569-RC 782 CG6569-RC 77..452 17..392 1880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21867403..21867746 393..50 1720 100 Minus
3R 32079331 3R 21867061..21867266 595..390 1030 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:27:06 has no hits.

BS14088.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:39 Download gff for BS14088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6569-PA 1..579 17..595 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:44:13 Download gff for BS14088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 77..655 17..595 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:41:30 Download gff for BS14088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 77..655 17..595 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:41:30 Download gff for BS14088.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21867061..21867264 392..595 100 <- Minus
3R 21867405..21867744 52..391 100 <- Minus
3R 21867809..21867843 17..51 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:44:13 Download gff for BS14088.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17692783..17692986 392..595 100 <- Minus
arm_3R 17693127..17693466 52..391 100 <- Minus
arm_3R 17693531..17693565 17..51 100   Minus

BS14088.pep Sequence

Translation from 16 to 1296

> BS14088.pep
MTQHENQQAILSNFVLEMCEGVDRLMRDQAELKVHLNEILNENRRLDIEL
AKCRSILVSGDYQELKHRLQLSNKALDASKKQVDELIKERNSLKTMHDLS
KQTIETMEMDLKNYRVQLKMSGDDQVIQRYSKIVKVLEAKVEDQQKEIRT
QAETIKALHDHKQHSGLQLQQLHAQLQDSEQSQSKVSILQKQLKEYELSL
SHTHNLLMESTRRETAAMRKLEEAIILSEEANKEKIDATKLAETYKEEMT
HLASNIGTIMDEASTRVDVEVGHLKNMLKQKDIIITTIKEKLKKLAVDHK
SVVHMLETRSNRLEQKYKEVLKQNDKLEAELEATCRRLGELERSVTEAYG
GDAEDARIKMYYKSQMDRCIMDHKKMKEKYREGMEDITQRFESEIYKLRE
ENSVLLAENELLKSGAAGDSSKQTSR*

BS14088.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-PA 426 CG6569-PA 1..426 1..426 2118 100 Plus
CG6569-PB 409 CG6569-PB 1..409 18..426 2033 100 Plus
CG6569-PC 135 CG6569-PC 1..135 1..135 636 94.8 Plus
CG6569-PD 125 CG6569-PD 1..125 1..125 628 100 Plus
cana-PC 1409 CG33694-PC 456..830 74..408 176 22.2 Plus