Clone Sequence Records
BS14090.3prime Sequence
604 bp (558 high quality bases) assembled on 2006-10-13
> BS14090.3prime
ATGGTCTAGAAAGCTTTTAAAGGTGTCCGTGCAAGGGATCGCGGCTGTCC
CGCAGGTAGACGGGACTGGTGAACGACTTGCCCTCCACATGCGAGGCGAG
ATTCTCGCCGGCGTAGGTGACGAAGGGCGAGATCTCGCAGACTTCGCCAT
GCACAATGCCACCGGCGCCTTCGATATACTTCTTGTGCAGGCGATGGAGG
TCCGAGCGGGCAGTACTGGGGCAATCCTTGCCAGCTGCATCGGAGTTCTT
TAGCGCGCTGAACTCTTCGTCGCGTGGCACTTCCATGGCCACGAACTTCT
GGGCGAACTCGAAGACGTCAAAGACAAACTTCTCTATCTTGATGCCGTTC
GGCTTGTCGGGCGTTAGACGCTTGCCGGCGTTGTCCACGAAGGGAATCTT
CTTCTTGGCCACGTGCAGCTTCAGCTCCTGCTCGTATGTGCTGCCAATCT
TCTGCAGGAAGTTCGAGCTGAAGAAGTGATTGCAAATGTTGCCAGCACTG
AAGGTCAGCCTGCCGTCTGAATTGCGCATCTCGGCTGTTTTGGCCGAGAT
TTCGCTGTACTCCACCACCTGGTATTTGCCATCGACAATGGCCACCACGC
CCAC
BS14090.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9535-PA | 1563 | CG9535-RA | 976..1563 | 604..17 | 2940 | 100 | Minus |
| CG9535-PB | 1452 | CG9535-RB | 865..1452 | 604..17 | 2940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mmy-RB | 1921 | CG9535-RB | 1027..1614 | 604..17 | 2940 | 100 | Minus |
| mmy-RA | 2030 | CG9535-RA | 1189..1776 | 604..17 | 2940 | 100 | Minus |
| mmy-RD | 2064 | CG9535-RD | 1170..1757 | 604..17 | 2940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6468845..6469432 | 17..604 | 2940 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:27:19 has no hits.
BS14090.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:40 Download gff for
BS14090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9535-PB | 865..1452 | 17..604 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:44:17 Download gff for
BS14090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RD | 1170..1757 | 17..604 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:42:07 Download gff for
BS14090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RD | 1170..1757 | 17..604 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:42:07 Download gff for
BS14090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6468845..6469432 | 17..604 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:44:17 Download gff for
BS14090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6468845..6469432 | 17..604 | 100 | | Plus |
BS14090.5prime Sequence
552 bp (549 high quality bases) assembled on 2006-10-13
> BS14090.5prime
GAAGTTATCAGTCGACATGACGGACTACCTGTCGCTGCACTCGCGACTCG
CCCAGGTGGGCCAGGAGCACCTGCTCAAGTTCTGGCCGGAACTAACGAAT
GACGAACGCATCGACCTGGTGCGGGACATCGAGGAGCTGAATCTGGACGA
GATCAAGCTGTATTTCGACCGCGCCACGGTCTCAATGAACGAGAATGGCA
TCAAGCTGGACGATCGCCTGCAGCCGCTGCCCGAGGGCAAGCTAATCTCC
ATTGCCAGGGCGCCGCTGGAGAAATTGGACGCCTACCGAGACGAGGGTCT
CCTCCAGATCAGCAACGGACATGTCGCTGTGCTGCTTATGGCAGGCGGAC
AAGGCACACGACTTGGCTTCGATCATCCCAAGGGAATGTACGATGTGGGA
CTGCAGTCTCGAAAGACCCTGTTCCGCATTCAGGCCGAGCGAATCCTGAA
GCTGGAGGAGCTCGCCCAAGAGGCGAATGGAAAACGTGGACACATCACTT
GGTACATCATGACGTCGGAGCACACGGTGCAACCCACATACGACTACTTT
GT
BS14090.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9535-PA | 1563 | CG9535-RA | 112..647 | 17..552 | 2680 | 100 | Plus |
| CG9535-PB | 1452 | CG9535-RB | 1..536 | 17..552 | 2680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mmy-RB | 1921 | CG9535-RB | 163..698 | 17..552 | 2680 | 100 | Plus |
| mmy-RA | 2030 | CG9535-RA | 325..860 | 17..552 | 2680 | 100 | Plus |
| mmy-RD | 2064 | CG9535-RD | 306..841 | 17..552 | 2680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6471327..6471664 | 354..17 | 1690 | 100 | Minus |
| 2L | 23513712 | 2L | 6469761..6469961 | 552..352 | 1005 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:05:55 has no hits.
BS14090.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:40 Download gff for
BS14090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9535-PB | 1..536 | 17..552 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:56:00 Download gff for
BS14090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RD | 297..841 | 8..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:18:47 Download gff for
BS14090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RD | 297..841 | 8..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:18:47 Download gff for
BS14090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6469761..6469959 | 354..552 | 100 | <- | Minus |
| 2L | 6471328..6471669 | 13..353 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:56:00 Download gff for
BS14090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6469761..6469959 | 354..552 | 100 | <- | Minus |
| arm_2L | 6471328..6471669 | 13..353 | 99 | -> | Minus |
BS14090.complete Sequence
1484 bp assembled on 2009-12-07
GenBank Submission: KX806319
> BS14090.complete
GAAGTTATCAGTCGACATGACGGACTACCTGTCGCTGCACTCGCGACTCG
CCCAGGTGGGCCAGGAGCACCTGCTCAAGTTCTGGCCGGAACTAACGAAT
GACGAACGCATCGACCTGGTGCGGGACATCGAGGAGCTGAATCTGGACGA
GATCAAGCTGTATTTCGACCGCGCCACGGTCTCAATGAACGAGAATGGCA
TCAAGCTGGACGATCGCCTGCAGCCGCTGCCCGAGGGCAAGCTAATCTCC
ATTGCCAGGGCGCCGCTGGAGAAATTGGACGCCTACCGAGACGAGGGTCT
CCTCCAGATCAGCAACGGACATGTCGCTGTGCTGCTTATGGCAGGCGGAC
AAGGCACACGACTTGGCTTCGATCATCCCAAGGGAATGTACGATGTGGGA
CTGCAGTCTCGAAAGACCCTGTTCCGCATTCAGGCCGAGCGAATCCTGAA
GCTGGAGGAGCTCGCCCAAGAGGCGAATGGAAAACGTGGACACATCACTT
GGTACATCATGACGTCGGAGCACACGGTGCAACCCACATACGACTACTTT
GTGGCCAATAACTTCTTTGGCCTGAAGGCGGAGAACGTACTGTTGTTCGA
GCAGGGATCACTGCCGTGCTTTGAATACGATGGACGCATCATTCTGGACG
AAAAGCATCGGGTGGCGCGTGCGCCGGACGGCAACGGAGGAATCTATCGG
GCTATGAAGCGCCAGGGGATTCTGGACGATATGCAGAAGCGTGGTGTCTT
ATATCTGCATGCCCATAGCGTGGACAACATCCTGATCAAGGTGGCCGATC
CCGTTTTTATCGGCTACTGCGTGCAGGAGAAGGCCGACTGCGCCGCTAAG
GTGGTGGAGAAGGCAGCTCCCAACGAGGCTGTGGGCGTGGTGGCCATTGT
CGATGGCAAATACCAGGTGGTGGAGTACAGCGAAATCTCGGCCAAAACAG
CCGAGATGCGCAATTCAGACGGCAGGCTGACCTTCAGTGCTGGCAACATT
TGCAATCACTTCTTCAGCTCGAACTTCCTGCAGAAGATTGGCAGCACATA
CGAGCAGGAGCTGAAGCTGCACGTGGCCAAGAAGAAGATTCCCTTCGTGG
ACAACGCCGGCAAGCGTCTAACGCCCGACAAGCCGAACGGCATCAAGATA
GAGAAGTTTGTCTTTGACGTCTTCGAGTTCGCCCAGAAGTTCGTGGCCAT
GGAAGTGCCACGCGACGAAGAGTTCAGCGCGCTAAAGAACTCCGATGCAG
CTGGCAAGGATTGCCCCAGTACTGCCCGCTCGGACCTCCATCGCCTGCAC
AAGAAGTATATCGAAGGCGCCGGTGGCATTGTGCATGGCGAAGTCTGCGA
GATCTCGCCCTTCGTCACCTACGCCGGCGAGAATCTCGCCTCGCATGTGG
AGGGCAAGTCGTTCACCAGTCCCGTCTACCTGCGGGACAGCCGCGATCCC
TTGCACGGACACCTTTAAAAGCTTTCTAGACCAT
BS14090.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mmy-RB | 1452 | CG9535-PB | 1..1452 | 17..1468 | 7260 | 100 | Plus |
| mmy-RA | 1563 | CG9535-PA | 112..1563 | 17..1468 | 7260 | 100 | Plus |
| mmy-RD | 1452 | CG9535-PD | 1..1452 | 17..1468 | 7260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mmy-RB | 1921 | CG9535-RB | 163..1614 | 17..1468 | 7260 | 100 | Plus |
| mmy-RA | 2030 | CG9535-RA | 325..1776 | 17..1468 | 7260 | 100 | Plus |
| mmy-RD | 2064 | CG9535-RD | 306..1757 | 17..1468 | 7260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:01:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6468845..6469961 | 1468..352 | 5585 | 100 | Minus |
| 2L | 23513712 | 2L | 6471327..6471664 | 354..17 | 1690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:01:10 has no hits.
BS14090.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:31 Download gff for
BS14090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RB | 161..1610 | 17..1466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:45 Download gff for
BS14090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RD | 306..1755 | 17..1466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:02 Download gff for
BS14090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RB | 161..1610 | 17..1466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:05 Download gff for
BS14090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RD | 306..1755 | 17..1466 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:05 Download gff for
BS14090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6468847..6469959 | 354..1466 | 100 | <- | Minus |
| 2L | 6471328..6471664 | 17..353 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:45 Download gff for
BS14090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6471328..6471664 | 17..353 | 100 | | Minus |
| arm_2L | 6468847..6469959 | 354..1466 | 100 | <- | Minus |
BS14090.pep Sequence
Translation from 16 to 1467
> BS14090.pep
MTDYLSLHSRLAQVGQEHLLKFWPELTNDERIDLVRDIEELNLDEIKLYF
DRATVSMNENGIKLDDRLQPLPEGKLISIARAPLEKLDAYRDEGLLQISN
GHVAVLLMAGGQGTRLGFDHPKGMYDVGLQSRKTLFRIQAERILKLEELA
QEANGKRGHITWYIMTSEHTVQPTYDYFVANNFFGLKAENVLLFEQGSLP
CFEYDGRIILDEKHRVARAPDGNGGIYRAMKRQGILDDMQKRGVLYLHAH
SVDNILIKVADPVFIGYCVQEKADCAAKVVEKAAPNEAVGVVAIVDGKYQ
VVEYSEISAKTAEMRNSDGRLTFSAGNICNHFFSSNFLQKIGSTYEQELK
LHVAKKKIPFVDNAGKRLTPDKPNGIKIEKFVFDVFEFAQKFVAMEVPRD
EEFSALKNSDAAGKDCPSTARSDLHRLHKKYIEGAGGIVHGEVCEISPFV
TYAGENLASHVEGKSFTSPVYLRDSRDPLHGHL*
BS14090.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:39:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mmy-PB | 483 | CG9535-PB | 1..483 | 1..483 | 2512 | 100 | Plus |
| mmy-PA | 520 | CG9535-PA | 38..520 | 1..483 | 2512 | 100 | Plus |
| mmy-PD | 483 | CG9535-PD | 1..483 | 1..483 | 2512 | 100 | Plus |
