Clone Sequence Records
BS14092.complete Sequence
1328 bp assembled on 2009-12-07
GenBank Submission: KX800523
> BS14092.complete
GAAGTTATCAGTCGACATGGTGAAAGGAACTCTGTACACTTACCCCGAGA
ACTTCCGGGCCTACAAGGCGCTCATCGCAGCCCAGTACTCCGGAGCCCAG
GTGAAAGTGGCCGACAACTTCAAGTTCGGCGAGACCAACAAGTCGGCTGA
GTTCCTCAAGAAGTTCCCCGGTGGCAAGGTACCCGCCTTTGAGACCGCCG
AAGGACAGTACTTGAGCGAGTCCAATGCCATCGCCTACCTGCTGGCCAAC
GAGCAGCTGCGCGGCGGAAAGTGCCCCTTCGTGCAGGCCCAGGTCCAGCA
GTGGATCTCCTTCGCCGACAACGAGATTGTGCCTGCCTCCTGTGCCTGGG
TCTTCCCCCTGCTGGGCATTCTGCCGCAGCAGAAGAACAGCACTGCCAAG
CAAGAGGCCGAGGCTGTGCTGCAGCAGCTCAACCAGAAGCTGCAGGACGC
CACCTTCCTGGCCGGCGAGAGGATCACATTGGCCGACATTGTGGTCTTCA
GCAGTCTGCTCCACCTGTACGAGTACGTCCTGGAGCCCAGTGTGCGCAGT
GCCTTCGGCAACGTGAACCGCTGGTTCGTCACCATCCTCAACCAGAAGCA
GGTCCAGGCCGTCGTCAAGGACTACAAGCTGTGCGAGAAGGCCCTGGTCT
TCGACCCCAAGAAGTACGCCGAGTTCCAGGCCAAGACCGGAGCCGCCAAG
CCCCAGCAGCAGGCTCAGCAGCAGAAGCAGGAGAAGAAGCCCAAGGAAAA
GAAGGAGGCGCCCAAGAAGGCTGCCGAGCCCGCCGAGGAGTTGGACGCCG
CCGATGAGGCCCTGGCCGCCGAGCCCAAGTCCAAGGACCCCTTCGATGCG
CTGCCCAAGGGCACCTTCAACTTCGATGACTTCAAGCGCGTGTACTCCAA
CGAGGACGAGGCCAAGTCCATTCCCTACTTCTTCGATAAGTTCGATGCCG
AGAACTACTCGATCTGGTTTGGCGAGTACAAATACAACGAGGAGCTGTCC
AAGGTGTTCATGTCGTGCAATCTCATCACCGGCATGTTCCAGCGTCTGGA
CAAGATGCGCAAGGCGGCCTTCGCCTCCGTTTGCCTGTTCGGCGAGGACG
GCAACAGCACCATCTCCGGTATCTGGGTGTGGCGCGGACAGGATCTGGCC
TTCACGCTCTCCCCCGACTGGCAGATCGACTACGAGGTCTACGACTGGAA
GAAGCTCGACGCCAAGAGCGAGGAGACCAAGAAGCTGGTCACCCAGTACT
TCTCCTGGTCCGGCACCGACAAGGACGGTCGCAAGTTCAACCAGGGCAAG
ATCTTCAAGTAAAAGCTTTCTAGACCAT
BS14092.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1gamma-RC | 1296 | CG11901-PC | 1..1296 | 17..1312 | 6465 | 99.9 | Plus |
| Ef1gamma-RA | 1296 | CG11901-PA | 1..1296 | 17..1312 | 6465 | 99.9 | Plus |
| Ef1gamma-RB | 1296 | CG11901-PB | 1..1296 | 17..1312 | 6465 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1gamma-RC | 1689 | CG11901-RC | 60..1356 | 16..1312 | 6470 | 99.9 | Plus |
| Ef1gamma-RA | 1662 | CG11901-RA | 33..1329 | 16..1312 | 6470 | 99.9 | Plus |
| Ef1gamma-RB | 1685 | CG11901-RB | 56..1352 | 16..1312 | 6470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29220641..29221776 | 177..1312 | 5665 | 99.9 | Plus |
| 3R | 32079331 | 3R | 29220430..29220581 | 29..180 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:17:02 has no hits.
BS14092.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:49 Download gff for
BS14092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RA | 89..1382 | 17..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:32 Download gff for
BS14092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RA | 34..1327 | 17..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:36 Download gff for
BS14092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RA | 89..1382 | 17..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:05 Download gff for
BS14092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RB | 57..1350 | 17..1310 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:05 Download gff for
BS14092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29220430..29220579 | 29..178 | 100 | -> | Plus |
| 3R | 29220643..29221774 | 179..1310 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:32 Download gff for
BS14092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25046152..25046301 | 29..178 | 100 | -> | Plus |
| arm_3R | 25046365..25047496 | 179..1310 | 99 | | Plus |
BS14092.3prime Sequence
534 bp (463 high quality bases) assembled on 2006-10-13
> BS14092.3prime
ATGGTCTAGAAAGCTTTTACTTGAAGATCTTGCCCTGGTTGAACTTGCGA
CCGTCCTTGTCGGTGCCGGACCAGGAGAAGTACTGGGTGACCAGCTTCTT
GGTCTCCTCGCTCTTGGCGTCGAGCTTCTTCCAGTCGTAGACCTCGTAGT
CGATCTGCCAGTCGGGGGAGAGCGTGAAGGCCAGATCCTGTCCGCGCCAC
ACCCAGATACCGGAGATGGTGCTGTTGCCGTCCTCGCCGAACAGGCAAAC
GGAGGCGAAGGCCGCCTTGCGCATCTTGTCCAGACGCTGGAACATGCCGG
TGATGAGATTGCACGACATGAACACCTTGGACAGCTCCTCGTTGTATTTG
TACTCGCCAAACCAGATCGAGTAGTTCTCGGCATCGAACTTATCGAAGAA
GTAGGGAATGGACTTGGCCTCGTCCTCGTTGGAGTACACGCGCTTGAAGT
CATCGAAGTTGAAGGTGCCCTTGGGCAGCGCATCGAAGGGGTCCTTGGAC
TTGGGCTCGGCGGCCAGGGCCTCATCGGCGGCGT
BS14092.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11901-PB | 1296 | Ef1gamma-RB | 779..1296 | 534..17 | 2590 | 100 | Minus |
| CG11901-PA | 1296 | Ef1gamma-RA | 779..1296 | 534..17 | 2590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1gamma-RC | 1689 | CG11901-RC | 839..1356 | 534..17 | 2590 | 100 | Minus |
| Ef1gamma-RA | 1662 | CG11901-RA | 812..1329 | 534..17 | 2590 | 100 | Minus |
| Ef1gamma-RB | 1685 | CG11901-RB | 835..1352 | 534..17 | 2590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29221259..29221776 | 534..17 | 2590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:50:04 has no hits.
BS14092.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:41 Download gff for
BS14092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11901-PA | 779..1296 | 17..534 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:08:50 Download gff for
BS14092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RA | 812..1335 | 12..534 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:20 Download gff for
BS14092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RB | 835..1358 | 12..534 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:20 Download gff for
BS14092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29221259..29221782 | 12..534 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:08:50 Download gff for
BS14092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25046981..25047504 | 12..534 | 99 | | Minus |
BS14092.5prime Sequence
548 bp (485 high quality bases) assembled on 2006-10-13
> BS14092.5prime
GAAGTTATCAGTCGACATGGTGAAAGGAACTCTGTACACTTACCCCGAGA
ACTTCCGGGCCTACAAGGCGCTCATCGCAGCCCAGTACTCCGGAGCCCAG
GTGAAAGTGGCCGACAACTTCAAGTTCGGCGAGACCAACAAGTCGGCTGA
GTTCCTCAAGAAGTTCCCCGGTGGCAAGGTACCCGCCTTTGAGACCGCCG
AAGGACAGTACTTGAGCGAGTCCAATGCCATCGCCTACCTGCTGGCCAAC
GAGCAGCTGCGCGGCGGAAAGTGCCCCTTCGTGCAGGCCCAGGTCCAGCA
GTGGATCTCCTTCGCCGACAACGAGATTGTGCCTGCCTCCTGTGCCTGGG
TCTTCCCCCTGCTGGGCATTCTGCCGCAGCAGAAGAACAGCACTGCCAAG
CAAGAGGCCGAGGCTGTGCTGCAGCAGCTCAACCAGAAGCTGCAGGACGC
CACCTTCCTGGCCGGCGAGAGGATCACATTGGCCGACATTGTGGTCTTCA
GCAGTCTGCTCCACCTGTACGAGTACGTCCTGGAGCCCAGTGTGCGCA
BS14092.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11901-PB | 1296 | Ef1gamma-RB | 1..532 | 17..548 | 2635 | 99.8 | Plus |
| CG11901-PA | 1296 | Ef1gamma-RA | 1..532 | 17..548 | 2635 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1gamma-RC | 1689 | CG11901-RC | 60..592 | 16..548 | 2650 | 99.8 | Plus |
| Ef1gamma-RA | 1662 | CG11901-RA | 33..565 | 16..548 | 2650 | 99.8 | Plus |
| Ef1gamma-RB | 1685 | CG11901-RB | 56..588 | 16..548 | 2650 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:17:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29220641..29221012 | 177..548 | 1845 | 99.7 | Plus |
| 3R | 32079331 | 3R | 29220430..29220581 | 29..180 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:18:00 has no hits.
BS14092.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:42 Download gff for
BS14092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11901-PA | 1..531 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:39:00 Download gff for
BS14092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RA | 28..564 | 12..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:14 Download gff for
BS14092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RB | 51..587 | 12..547 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:14 Download gff for
BS14092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29220430..29220579 | 29..178 | 100 | -> | Plus |
| 3R | 29220643..29221011 | 179..547 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:39:00 Download gff for
BS14092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25046152..25046301 | 29..178 | 100 | -> | Plus |
| arm_3R | 25046365..25046733 | 179..547 | 99 | | Plus |
BS14092.pep Sequence
Translation from 16 to 1311
> BS14092.pep
MVKGTLYTYPENFRAYKALIAAQYSGAQVKVADNFKFGETNKSAEFLKKF
PGGKVPAFETAEGQYLSESNAIAYLLANEQLRGGKCPFVQAQVQQWISFA
DNEIVPASCAWVFPLLGILPQQKNSTAKQEAEAVLQQLNQKLQDATFLAG
ERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNRWFVTILNQKQVQAVV
KDYKLCEKALVFDPKKYAEFQAKTGAAKPQQQAQQQKQEKKPKEKKEAPK
KAAEPAEELDAADEALAAEPKSKDPFDALPKGTFNFDDFKRVYSNEDEAK
SIPYFFDKFDAENYSIWFGEYKYNEELSKVFMSCNLITGMFQRLDKMRKA
AFASVCLFGEDGNSTISGIWVWRGQDLAFTLSPDWQIDYEVYDWKKLDAK
SEETKKLVTQYFSWSGTDKDGRKFNQGKIFK*
BS14092.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1gamma-PC | 431 | CG11901-PC | 1..431 | 1..431 | 2255 | 100 | Plus |
| Ef1gamma-PA | 431 | CG11901-PA | 1..431 | 1..431 | 2255 | 100 | Plus |
| Ef1gamma-PB | 431 | CG11901-PB | 1..431 | 1..431 | 2255 | 100 | Plus |
