Clone Sequence Records
BS14094.complete Sequence
1904 bp assembled on 2009-12-07
GenBank Submission: KX802208
> BS14094.complete
GAAGTTATCAGTCGACATGGATGAAAAAGATAAAGCTCAACACAACATGA
TATCCAACCTACCACTTTTGTTTGCGAACGGATATCCAACATCCCTAGAA
AAAATTACGGAGTCCCAGTTAGAAAATTTTATTCCCTTCATGGTGCAATG
CTCTTTAGGACACATAAACTTACCAAAGAAAATAGATTGCAGTGAACCAG
AATGGTGGCCCGAAAGCGCTCCTTTCGAGATTCCGCTCAAAAAGCCGAAA
GCATTTGTTGGGAATTGGATGGAAAAAATGAAAGAAATTGTGGTTATATG
CTATCAATTTCACAAAAGCTTATTTCTATTAAGATTTTGTAATGATTTAG
CTGCGTATGAACACGCGAGCTTAAGATTCATAAACAATTATAACTCAACA
ACTTCATTGTATGACAGGAGAAACAACAAACTGTTGGTTACATTTCGAAA
TGAAAACATGTCATATGATAGACAACAAAAGAACAGAAAGTGCTTGTTGC
TGCAAAAGAACAACAGTTCCATTAGCGAAAACGTACAGCATATGATGGTT
GAGCCACCACCTTTTGATATCTACCTATGTGACAACTGTGATGCCGAACT
TTATTCTAAAGAAGCTATACTCGAACACGAAAACATTTGTTGCATGGAGG
ATGACGTTATACTTTGTGATTCCCCTGAGCCAGATAACAAAAGTGATGGG
AAAAACGAAGATATCGAACAGCGCAACGCCTTTCTCTTAAACTTTAAACT
GCAACCCAAATTCTCCGATAATAGTTTATCTAAAGAGAAACAGAAAACAT
ATTCATTCAGCGAAGAAACATCAACGGAAACATCAAACAGAAAGAGGCGT
TTACCATCGCGGAGAAATCGAACAGTTCATTCGTTTAGTAGGTGTTCGTT
TATCCCAATATCATCACCTGCAGGACAGCAATTGTTAAAATCGACAAAAC
AAACAATATCAATGGATTATATTGCGGAAAGACAGGAACGCCTGGAACGC
TTTTGTTACACTCCATTGATCAATAAATCAAATACCAAGCAAAAGTATTT
TGAAAAAAAAACAAACACTACAGTGCATTGTACATTTAAAAAGTCACATG
AACACAATTATCACATATATTCCTTTCCGCGGCGTCAATTTGTTAAACGC
AGGGACACTACTGAGAACTTTTTGTTTTTGAACTCTCCGCTGATTAAACA
ATGCCGTCCAATATCAGTCAGATTGAAAAAAATATCCGAACACGTAATGG
AAGAGCAAAATCACACTGCAAATACAAAACTCAATATAAGACTAACGCGC
CACAATTCGCTCAACTCACACTGGAGAATTTCACCCACAAAGGAAGTTGT
TGTTGATACAATTGACTTATGCTCCTCGGACGACGATGAGCAACAAGAGC
CAGCAATAGGCTCGCCCAAAAGACTTGGCTCGGATGCACTGACTGTAATA
AAACTTACACATAACAACAGAAATTTGTACAGTAGCCGCGTCGTCGAGCC
AAGTAAATGTGCTCCAGAGCCAGAATCAGTAATAGTTGATAATTCGGTTA
AGCCCCTACAGCAATCTTTATATATTTATTCAAACTATAAGGCTAATTCA
GTAATTAGTCGCTGTACCGTAGACTCGATAGCCAATCATTCACTGGTTGG
TTCCCTGAGTACATCGAATACTTTTGCTGATTCTGAGGGACACAGAAAGG
AATACAATCAGGAAAACTGCAATTTTTCTAAGAACTTGGTCGCACTCACA
GACTGGTACGCTCATTCGGCTAATTCGAAAAAAAGCACTACAAATCAGAC
TACTGAGAGTAGTACGTTTGATGCGATTTCCGCGGCTCCGCCTTTCAATG
GCACTGGGCGTATAATTTCCATTGATTTAACTTCTTAGAAGCTTTCTAGA
CCAT
BS14094.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5694-RB | 1872 | CG5694-PB | 1..1872 | 17..1888 | 9360 | 100 | Plus |
| CG5694-RA | 1872 | CG5694-PA | 1..1872 | 17..1888 | 9360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5694-RB | 2388 | CG5694-RB | 416..2288 | 17..1889 | 9365 | 100 | Plus |
| CG5694-RA | 2132 | CG5694-RA | 160..2032 | 17..1889 | 9365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10227860..10229126 | 1889..623 | 6335 | 100 | Minus |
| 2L | 23513712 | 2L | 10229705..10229950 | 262..17 | 1230 | 100 | Minus |
| 2L | 23513712 | 2L | 10229414..10229612 | 460..262 | 995 | 100 | Minus |
| 2L | 23513712 | 2L | 10229184..10229347 | 623..460 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:07:18 has no hits.
BS14094.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:51 Download gff for
BS14094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5694-RB | 413..2284 | 17..1888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:26 Download gff for
BS14094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5694-RA | 160..2031 | 17..1888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:31 Download gff for
BS14094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5694-RB | 413..2284 | 17..1888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:27 Download gff for
BS14094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5694-RA | 160..2031 | 17..1888 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:27 Download gff for
BS14094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10227861..10229126 | 623..1888 | 100 | <- | Minus |
| 2L | 10229185..10229346 | 461..622 | 100 | <- | Minus |
| 2L | 10229414..10229611 | 263..460 | 100 | <- | Minus |
| 2L | 10229705..10229950 | 17..262 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:26 Download gff for
BS14094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10227861..10229126 | 623..1888 | 100 | <- | Minus |
| arm_2L | 10229185..10229346 | 461..622 | 100 | <- | Minus |
| arm_2L | 10229414..10229611 | 263..460 | 100 | <- | Minus |
| arm_2L | 10229705..10229950 | 17..262 | 100 | | Minus |
BS14094.3prime Sequence
583 bp (582 high quality bases) assembled on 2006-10-13
> BS14094.3prime
ATGGTCTAGAAAGCTTCTAAGAAGTTAAATCAATGGAAATTATACGCCCA
GTGCCATTGAAAGGCGGAGCCGCGGAAATCGCATCAAACGTACTACTCTC
AGTAGTCTGATTTGTAGTGCTTTTTTTCGAATTAGCCGAATGAGCGTACC
AGTCTGTGAGTGCGACCAAGTTCTTAGAAAAATTGCAGTTTTCCTGATTG
TATTCCTTTCTGTGTCCCTCAGAATCAGCAAAAGTATTCGATGTACTCAG
GGAACCAACCAGTGAATGATTGGCTATCGAGTCTACGGTACAGCGACTAA
TTACTGAATTAGCCTTATAGTTTGAATAAATATATAAAGATTGCTGTAGG
GGCTTAACCGAATTATCAACTATTACTGATTCTGGCTCTGGAGCACATTT
ACTTGGCTCGACGACGCGGCTACTGTACAAATTTCTGTTGTTATGTGTAA
GTTTTATTACAGTCAGTGCATCCGAGCCAAGTCTTTTGGGCGAGCCTATT
GCTGGCTCTTGTTGCTCATCGTCGTCCGAGGAGCATAAGTCAATTGTATC
AACAACAACTTCCTTTGTGGGTGAAATTCTCCA
BS14094.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5694-PA | 1872 | CG5694-RA | 1306..1872 | 583..17 | 2835 | 100 | Minus |
| CG5694-PB | 1872 | CG5694-RB | 1306..1872 | 583..17 | 2835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5694-RB | 2388 | CG5694-RB | 1721..2288 | 583..16 | 2840 | 100 | Minus |
| CG5694-RA | 2132 | CG5694-RA | 1465..2032 | 583..16 | 2840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10227860..10228427 | 16..583 | 2840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:13:28 has no hits.
BS14094.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:43 Download gff for
BS14094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5694-PB | 1307..1872 | 17..582 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:47:49 Download gff for
BS14094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5694-RA | 1466..2039 | 7..582 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:19 Download gff for
BS14094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5694-RA | 1466..2039 | 7..582 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:19 Download gff for
BS14094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10227853..10228426 | 7..582 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:47:49 Download gff for
BS14094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10227853..10228426 | 7..582 | 99 | | Plus |
BS14094.5prime Sequence
674 bp (593 high quality bases) assembled on 2006-10-13
> BS14094.5prime
GAAGTTATCAGTCGACATGGATGAAAAAGATAAAGCTCAACACAACATGA
TATCCAACCTACCACTTTTGTTTGCGAACGGATATCCAACATCCCTAGAA
AAAATTACGGAGTCCCAGTTAGAAAATTTTATTCCCTTCATGGTGCAATG
CTCTTTAGGACACATAAACTTACCAAAGAAAATAGATTGCAGTGAACCAG
AATGGTGGCCCGAAAGCGCTCCTTTCGAGATTCCGCTCAAAAAGCCGAAA
GCATTTGTTGGGAATTGGATGGAAAAAATGAAAGAAATTGTGGTTATATG
CTATCAATTTCACAAAAGCTTATTTCTATTAAGATTTTGTAATGATTTAG
CTGCGTATGAACACGCGAGCTTAAGATTCATAAACAATTATAACTCAACA
ACTTCATTGTATGACAGGAGAAACAACAAACTGTTGGTTACATTTCGAAA
TGAAAACATGTCATATGATAGACAACAAAAGAACAGAAAGTGCTTGTTGC
TGCAAAAGAACAACAGTTCCATTAGCGAAAACGTACAGCATATGATGGTT
GAGCCACCACCTTTTGATATCTACCTATGTGACAACTGTGATGCCGAACT
TTATTCTAAAGAAGCTATACTCGAACACGAAAACCATTGTTGCATGGAAG
ATGACGTTATTCTTTGTGATTCCC
BS14094.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5694-PA | 1872 | CG5694-RA | 1..658 | 17..674 | 3190 | 99.3 | Plus |
| CG5694-PB | 1872 | CG5694-RB | 1..658 | 17..674 | 3190 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5694-RB | 2388 | CG5694-RB | 406..1073 | 7..674 | 3235 | 99.1 | Plus |
| CG5694-RA | 2132 | CG5694-RA | 160..817 | 17..674 | 3230 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10229705..10229950 | 262..17 | 1230 | 100 | Minus |
| 2L | 23513712 | 2L | 10229414..10229612 | 460..262 | 995 | 100 | Minus |
| 2L | 23513712 | 2L | 10229184..10229347 | 623..460 | 820 | 100 | Minus |
| 2L | 23513712 | 2L | 10229075..10229126 | 674..623 | 200 | 92.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:09:09 has no hits.
BS14094.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:44 Download gff for
BS14094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5694-PB | 1..658 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:42:13 Download gff for
BS14094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5694-RB | 404..1073 | 2..674 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:09:45 Download gff for
BS14094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5694-RB | 404..1073 | 2..674 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:09:45 Download gff for
BS14094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10229075..10229126 | 623..674 | 92 | <- | Minus |
| 2L | 10229185..10229346 | 461..622 | 100 | <- | Minus |
| 2L | 10229414..10229611 | 263..460 | 100 | <- | Minus |
| 2L | 10229705..10229961 | 5..262 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:42:13 Download gff for
BS14094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10229075..10229126 | 623..674 | 92 | <- | Minus |
| arm_2L | 10229185..10229346 | 461..622 | 100 | <- | Minus |
| arm_2L | 10229414..10229611 | 263..460 | 100 | <- | Minus |
| arm_2L | 10229705..10229961 | 5..262 | 98 | | Minus |
BS14094.pep Sequence
Translation from 16 to 1887
> BS14094.pep
MDEKDKAQHNMISNLPLLFANGYPTSLEKITESQLENFIPFMVQCSLGHI
NLPKKIDCSEPEWWPESAPFEIPLKKPKAFVGNWMEKMKEIVVICYQFHK
SLFLLRFCNDLAAYEHASLRFINNYNSTTSLYDRRNNKLLVTFRNENMSY
DRQQKNRKCLLLQKNNSSISENVQHMMVEPPPFDIYLCDNCDAELYSKEA
ILEHENICCMEDDVILCDSPEPDNKSDGKNEDIEQRNAFLLNFKLQPKFS
DNSLSKEKQKTYSFSEETSTETSNRKRRLPSRRNRTVHSFSRCSFIPISS
PAGQQLLKSTKQTISMDYIAERQERLERFCYTPLINKSNTKQKYFEKKTN
TTVHCTFKKSHEHNYHIYSFPRRQFVKRRDTTENFLFLNSPLIKQCRPIS
VRLKKISEHVMEEQNHTANTKLNIRLTRHNSLNSHWRISPTKEVVVDTID
LCSSDDDEQQEPAIGSPKRLGSDALTVIKLTHNNRNLYSSRVVEPSKCAP
EPESVIVDNSVKPLQQSLYIYSNYKANSVISRCTVDSIANHSLVGSLSTS
NTFADSEGHRKEYNQENCNFSKNLVALTDWYAHSANSKKSTTNQTTESST
FDAISAAPPFNGTGRIISIDLTS*
BS14094.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5694-PB | 623 | CG5694-PB | 1..623 | 1..623 | 3290 | 100 | Plus |
| CG5694-PA | 623 | CG5694-PA | 1..623 | 1..623 | 3290 | 100 | Plus |
