Clone Sequence Records
BS14095.complete Sequence
1718 bp assembled on 2009-12-07
GenBank Submission: KX800840
> BS14095.complete
GAAGTTATCAGTCGACATGTTGTTCGCCAGAACCACCTCGTCCACGTCGA
TCAGTCCGCCCGCGATGATGATGCAGCAGCACCAGCAGCAGCAGCAGCAG
CAGGATCCTCAGAAGCTGGGACAGCAATTCCATCAGCAGCCAGCATTTCA
GCTACAGCAAAGCTTCTGCGAGACAACGTATCACATGAAAATACTGGTGC
CCGCGGTGGCCTCCGGGGCCATCATTGGCAAAGGTGGCGAGACGATCGCC
TCCCTGCAGAAGGACACGGGTGCTAGGGTCAAGATGTCCAAGTCGCACGA
CTTCTACCCAGGCACCACCGAACGCGTGTGCCTGATCACCGGCTCCACGG
AGGCTATCATGGTCGTGATGGAGTTCATCATGGACAAGATCCGCGAGAAG
CCCGACCTGACCAACAAGATCGTCGATACCGACTCAAAACAGACACAGGA
GCGCGACAAGCAGGTCAAGATCCTGGTGCCCAACTCGACCGCCGGCATGA
TCATTGGCAAGGGCGGTGCCTTCATTAAACAGATCAAGGAGGAGAGCGGC
TCCTATGTCCAGATCTCGCAGAAGCCCACGGATGTGTCGTTGCAGGAGCG
CTGCATCACCATCATAGGCGACAAGGAGAACAATAAGAACGCCTGCAAGA
TGATCCTCTCGAAGATCGTCGAAGATCCCCAGTCGGGCACCTGCCTGAAC
GTATCCTACGCGGACGTCAGCGGCCCGGTGGCCAACTTTAATCCGACCGG
CTCCCCGTACGCCACCAATCAGAATGCCATCAACTCGAGCACCGCTTCGT
TGAACTCCACGTTGGGCACCACGATCGGCGGTGCAAACTCGGCGGCCAGC
CTGCTAGTCAACGGCACCGGCATCAATTTGTCCATCAATCTGGGCTCACC
CAATCCGGCGCCCAATCTAGCGGTTGCCACACAGCTGCTCGAGCATATTA
AGGTTGCCATGCGCGGCTCTGGCTATTCGGAGACCGTAACGAACGAAGTT
GTCGCCGCTCTGAGCGTGCTGGCCAAGTACGGCGTCCTTGGAATGGGCGT
GGGTGTGTCGCACACCAACGGCGCCCACTCAACGCTGGGCAACTTCCTGG
GCGTAACGACGCTGGACCAGCAGACAGCCGCTGCCGCATCTGCGGCCACC
GCCAGCAATGTGTTCGGTGCCGTTGGCCAGGTAAATCTGGAGCAATATGC
CGCAGCGGTGGCCTCTGCAGCTGCCGCCAGCCGGCCGACGCAGTCGCAAC
TGGACGCTGCCGCAGTGCAATTCGATCCATTCCGCCATTTGGGCTCGGCA
ACGGCGCCGGCCGCCACGCCCGTCTCACTGAACAACAATAGCTTTGGATT
GACGGCGACCACGGGAACGGCGACCACGGCGCAGCTGGGCGGTCTAAGCA
AGAGTCCCACTCCCGGTGACCTTAGCTCCAAGGACTCGAAAAACGTCGAG
GTGCCGGAAGTGATTATCGGCGCTATCCTAGGTCCGAGCGGTCGTAGTTT
AGTTGAAATTCAACATGTTTCTGGCGCAAATGTGCAAATTTCCAAAAAGG
GCATATTCGCACCTGGCACTAGAAATCGCATTGTAACCATAACTGGTCAG
CCGAGTGCCATTGCCAAAGCGCAATATCTAATTGAACAGAAAATCAACGA
GGAGGAGACAAAGAGGGCGCGACAAATTCCATTAACCACTGTTGTGAATT
AAAAGCTTTCTAGACCAT
BS14095.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ps-RC | 1686 | CG42670-PC | 1..1686 | 17..1702 | 8430 | 100 | Plus |
ps-RR | 2343 | CG42670-PR | 809..2343 | 168..1702 | 7675 | 100 | Plus |
ps-RQ | 1554 | CG42670-PQ | 20..1554 | 168..1702 | 7675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:24:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ps-RC | 2619 | CG8144-RC | 133..1821 | 16..1704 | 8445 | 100 | Plus |
ps-RR | 3624 | CG42670-RR | 1290..2826 | 168..1704 | 7685 | 100 | Plus |
ps-RQ | 2492 | CG42670-RQ | 158..1694 | 168..1704 | 7685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9445252..9445898 | 309..955 | 3235 | 100 | Plus |
3R | 32079331 | 3R | 9445967..9446499 | 951..1483 | 2665 | 100 | Plus |
3R | 32079331 | 3R | 9447627..9447851 | 1480..1704 | 1125 | 100 | Plus |
3R | 32079331 | 3R | 9436967..9437119 | 16..168 | 765 | 100 | Plus |
3R | 32079331 | 3R | 9445044..9445188 | 168..312 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:24:13 has no hits.
BS14095.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:36 Download gff for
BS14095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ps-RC | 139..1817 | 22..1700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:22 Download gff for
BS14095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ps-RC | 139..1817 | 22..1700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:20 Download gff for
BS14095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ps-RC | 139..1817 | 22..1700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:40 Download gff for
BS14095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ps-RC | 139..1817 | 22..1700 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:40 Download gff for
BS14095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9436973..9437118 | 22..167 | 100 | -> | Plus |
3R | 9445044..9445187 | 168..311 | 100 | -> | Plus |
3R | 9445255..9445895 | 312..952 | 100 | -> | Plus |
3R | 9445969..9446497 | 953..1481 | 100 | -> | Plus |
3R | 9447629..9447847 | 1482..1700 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:22 Download gff for
BS14095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5262695..5262840 | 22..167 | 100 | -> | Plus |
arm_3R | 5270766..5270909 | 168..311 | 100 | -> | Plus |
arm_3R | 5270977..5271617 | 312..952 | 100 | -> | Plus |
arm_3R | 5271691..5272219 | 953..1481 | 100 | -> | Plus |
arm_3R | 5273351..5273569 | 1482..1700 | 100 | | Plus |
BS14095.3prime Sequence
619 bp (618 high quality bases) assembled on 2006-10-13
> BS14095.3prime
ATGGTCTAGAAAGCTTTTAATTCACAACAGTGGTTAATGGAATTTGTCGC
GCCCTCTTTGTCTCCTCCTCGTTGATTTTCTGTTCAATTAGATATTGCGC
TTTGGCAATGGCACTCGGCTGACCAGTTATGGTTACAATGCGATTTCTAG
TGCCAGGTGCGAATATGCCCTTTTTGGAAATTTGCACATTTGCGCCAGAA
ACATGTTGAATTTCAACTAAACTACGACCGCTCGGACCTAGGATAGCGCC
GATAATCACTTCCGGCACCTCGACGTTTTTCGAGTCCTTGGAGCTAAGGT
CACCGGGAGTGGGACTCTTGCTTAGACCGCCCAGCTGCGCCGTGGTCGCC
GTTCCCGTGGTCGCCGTCAATCCAAAGCTATTGTTGTTCAGTGAGACGGG
CGTGGCGGCCGGCGCCGTTGCCGAGCCCAAATGGCGGAATGGATCGAATT
GCACTGCGGCAGCGTCCAGTTGCGACTGCGTCGGCCGGCTGGCGGCAGCT
GCAGAGGCCACCGCTGCGGCATATTGCTCCAGATTTACCTGGCCAACGGC
ACCGAACACATTGCTGGCGGTGGCCGCAGATGCGGCAGCGGCTGTCTGCT
GGTCCAGCGTCGTTACGCC
BS14095.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16765-PF | 1719 | ps-RF | 1117..1719 | 619..17 | 3015 | 100 | Minus |
CG16765-PG | 1719 | ps-RG | 1117..1719 | 619..17 | 3015 | 100 | Minus |
CG16765-PH | 1719 | ps-RH | 1117..1719 | 619..17 | 3015 | 100 | Minus |
CG16765-PJ | 1620 | ps-RJ | 1018..1620 | 619..17 | 3015 | 100 | Minus |
CG16765-PK | 1653 | ps-RK | 1051..1653 | 619..17 | 3015 | 100 | Minus |
CG16765-PD | 1752 | ps-RD | 1150..1752 | 619..17 | 3015 | 100 | Minus |
CG16765-PC | 1686 | ps-RC | 1084..1686 | 619..17 | 3015 | 100 | Minus |
CG16765-PI | 1560 | ps-RI | 1150..1533 | 619..236 | 1920 | 100 | Minus |
CG16765-PB | 1428 | ps-RB | 1018..1401 | 619..236 | 1920 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ps-RR | 3624 | CG42670-RR | 2222..2826 | 619..15 | 3025 | 100 | Minus |
ps-RQ | 2492 | CG42670-RQ | 1090..1694 | 619..15 | 3025 | 100 | Minus |
ps-RT | 2889 | CG42670-RT | 1487..2091 | 619..15 | 3025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:56:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9446116..9446499 | 619..236 | 1920 | 100 | Minus |
3R | 32079331 | 3R | 9447627..9447851 | 239..15 | 1125 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:57:00 has no hits.
BS14095.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:44 Download gff for
BS14095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16765-PG | 1117..1719 | 17..619 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:50:56 Download gff for
BS14095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ps-RO | 2112..2716 | 15..619 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:17:26 Download gff for
BS14095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ps-RT | 1487..2091 | 15..619 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:17:26 Download gff for
BS14095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9446116..9446497 | 238..619 | 100 | -> | Minus |
3R | 9447629..9447851 | 15..237 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:50:56 Download gff for
BS14095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5271838..5272219 | 238..619 | 100 | -> | Minus |
arm_3R | 5273351..5273573 | 15..237 | 100 | | Minus |
BS14095.5prime Sequence
669 bp (619 high quality bases) assembled on 2006-10-13
> BS14095.5prime
GAAGTTATCAGTCGACATGTTGTTCGCCAGAACCACCTCGTCCACGTCGA
TCAGTCCGCCCGCGATGATGATGCAGCAGCACCAGCAGCAGCAGCAGCAG
CAGGATCCTCAGAAGCTGGGACAGCAATTCCATCAGCAGCCAGCATTTCA
GCTACAGCAAAGCTTCTGCGAGACAACGTATCACATGAAAATACTGGTGC
CCGCGGTGGCCTCCGGGGCCATCATTGGCAAAGGTGGCGAGACGATCGCC
TCCCTGCAGAAGGACACGGGTGCTAGGGTCAAGATGTCCAAGTCGCACGA
CTTCTACCCAGGCACCACCGAACGCGTGTGCCTGATCACCGGCTCCACGG
AGGCTATCATGGTCGTGATGGAGTTCATCATGGACAAGATCCGCGAGAAG
CCCGACCTGACCAACAAGATCGTCGATACCGACTCAAAACAGACACAGGA
GCGCGACAAGCAGGTCAAGATCCTGGTGCCCAACTCGACCGCCGGCATGA
TCATTGGCAAGGGCGGTGCCTTCATTAAACAGATCAAGGAGGAGAGCGGC
TCCTATGTCCAGATCTCGCAGAAGCCCACGGATGTGTCGTTGCAGGAGCG
CTGCATCACCATCATAGGCGACAGGGAGAACAATAAGAACGCCTGCAAGA
TGATCCTCTCGAAGATCGT
BS14095.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16765-PC | 1686 | ps-RC | 1..653 | 17..669 | 3240 | 99.8 | Plus |
CG16765-PI | 1560 | ps-RI | 218..719 | 168..669 | 2485 | 99.8 | Plus |
CG16765-PD | 1752 | ps-RD | 218..719 | 168..669 | 2485 | 99.8 | Plus |
CG16765-PF | 1719 | ps-RF | 185..686 | 168..669 | 2485 | 99.8 | Plus |
CG16765-PG | 1719 | ps-RG | 185..686 | 168..669 | 2485 | 99.8 | Plus |
CG16765-PH | 1719 | ps-RH | 185..686 | 168..669 | 2485 | 99.8 | Plus |
CG16765-PJ | 1620 | ps-RJ | 86..587 | 168..669 | 2485 | 99.8 | Plus |
CG16765-PK | 1653 | ps-RK | 119..620 | 168..669 | 2485 | 99.8 | Plus |
CG16765-PB | 1428 | ps-RB | 86..587 | 168..669 | 2485 | 99.8 | Plus |
CG16765-PI | 1560 | ps-RI | 1..152 | 17..168 | 760 | 100 | Plus |
CG16765-PD | 1752 | ps-RD | 1..152 | 17..168 | 760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:03:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ps-RC | 2619 | CG8144-RC | 133..786 | 16..669 | 3255 | 99.8 | Plus |
ps-RR | 3624 | CG42670-RR | 1290..1791 | 168..669 | 2495 | 99.8 | Plus |
ps-RQ | 2492 | CG42670-RQ | 158..659 | 168..669 | 2495 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:03:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9445252..9445612 | 309..669 | 1790 | 99.7 | Plus |
3R | 32079331 | 3R | 9436967..9437119 | 16..168 | 765 | 100 | Plus |
3R | 32079331 | 3R | 9445044..9445188 | 168..312 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:03:37 has no hits.
BS14095.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:45 Download gff for
BS14095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16765-PC | 1..653 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:24 Download gff for
BS14095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ps-RC | 127..786 | 9..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:59 Download gff for
BS14095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ps-RC | 127..786 | 9..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:58:59 Download gff for
BS14095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9436961..9437118 | 9..167 | 98 | -> | Plus |
3R | 9445044..9445187 | 168..311 | 100 | -> | Plus |
3R | 9445255..9445612 | 312..669 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:24 Download gff for
BS14095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5262683..5262840 | 9..167 | 98 | -> | Plus |
arm_3R | 5270766..5270909 | 168..311 | 100 | -> | Plus |
arm_3R | 5270977..5271334 | 312..669 | 99 | | Plus |
BS14095.pep Sequence
Translation from 16 to 1701
> BS14095.pep
MLFARTTSSTSISPPAMMMQQHQQQQQQQDPQKLGQQFHQQPAFQLQQSF
CETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGT
TERVCLITGSTEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQV
KILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITII
GDKENNKNACKMILSKIVEDPQSGTCLNVSYADVSGPVANFNPTGSPYAT
NQNAINSSTASLNSTLGTTIGGANSAASLLVNGTGINLSINLGSPNPAPN
LAVATQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVGVSHT
NGAHSTLGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYAAAVAS
AAAASRPTQSQLDAAAVQFDPFRHLGSATAPAATPVSLNNNSFGLTATTG
TATTAQLGGLSKSPTPGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQH
VSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIEQKINEEETKR
ARQIPLTTVVN*
BS14095.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ps-PC | 561 | CG8144-PC | 1..561 | 1..561 | 2803 | 100 | Plus |
ps-PD | 583 | CG8144-PD | 1..583 | 1..561 | 2770 | 96.2 | Plus |
ps-PS | 594 | CG42670-PS | 67..594 | 36..561 | 2538 | 97.3 | Plus |
ps-PL | 758 | CG16765-PL | 231..758 | 36..561 | 2538 | 97.3 | Plus |
ps-PR | 780 | CG42670-PR | 271..780 | 52..561 | 2536 | 100 | Plus |