Clone Sequence Records
BS14101.5prime Sequence
352 bp (352 high quality bases) assembled on 2006-10-13
> BS14101.5prime
GAAGTTATCAGTCGACATGATGAAATTGATGCTAGTCGTTGGCTCGATAG
CCCTTCTCCTGGCCCTGGCCAGTGCCCGGCCGCAAAATGATGTGGAAGTT
CTTGAGTACGAATCGGAGAACACCGGCCTCGGCGGCTACAAGTTCAGCTA
CAAACTGAGCGATGGCACCAGTCGAACAGAGGAGGGCGTGGTCAACAACG
CGGGCACCGACAACGAATCCATATCCATTCGGGGATCCGTCACCTGGGTG
GCTCCCGATGGCCAAACCTACACCATTAACTTTGTGGCCGACGAGAACGG
TTTTCAGCCGGAGGGTGCCCATCTGCCCAAGTAGAAGCTTTCTAGACCAT
TC
BS14101.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10297-PA | 318 | Acp65Aa-RA | 1..318 | 17..334 | 1590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:47:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp65Aa-RA | 615 | CG10297-RA | 65..385 | 15..335 | 1605 | 100 | Plus |
Cpr65Av-RA | 642 | CG32405-RA | 348..440 | 236..328 | 195 | 80.6 | Plus |
Lcp65Ac-RA | 505 | CG6956-RA | 330..403 | 257..330 | 190 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6152280..6152587 | 335..28 | 1540 | 100 | Minus |
3L | 28110227 | 3L | 6139425..6139517 | 328..236 | 195 | 80.6 | Minus |
3L | 28110227 | 3L | 6143799..6143872 | 256..329 | 190 | 83.8 | Plus |
3L | 28110227 | 3L | 6145218..6145291 | 257..330 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:47:04 has no hits.
BS14101.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:46 Download gff for
BS14101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10297-PA | 1..318 | 17..334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:37 Download gff for
BS14101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 62..388 | 12..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:17 Download gff for
BS14101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 62..388 | 12..339 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:17 Download gff for
BS14101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6152277..6152586 | 29..339 | 99 | <- | Minus |
3L | 6152668..6152684 | 12..28 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:37 Download gff for
BS14101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6145377..6145686 | 29..339 | 99 | <- | Minus |
arm_3L | 6145768..6145784 | 12..28 | 94 | | Minus |
BS14101.3prime Sequence
348 bp (348 high quality bases) assembled on 2006-10-13
> BS14101.3prime
ATGGTCTAGAAAGCTTCTACTTGGGCAGATGGGCACCCTCCGGCTGAAAA
CCGTTCTCGTCGGCCACAAAGTTAATGGTGTAGGTTTGGCCATCGGGAGC
CACCCAGGTGACGGATCCCCGAATGGATATGGATTCGTTGTCGGTGCCCG
CGTTGTTGACCACGCCCTCCTCTGTTCGACTGGTGCCATCGCTCAGTTTG
TAGCTGAACTTGTAGCCGCCGAGGCCGGTGTTCTCCGATTCGTACTCAAG
AACTTCCACATCATTTTGCGGCCGGGCACTGGCCAGGGCCAGGAGAAGGG
CTATCGAGCCAACGACTAGCATCAATTTCATCATGTCGACTGATAACT
BS14101.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10297-PA | 318 | Acp65Aa-RA | 1..318 | 334..17 | 1590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp65Aa-RA | 615 | CG10297-RA | 65..385 | 336..16 | 1605 | 100 | Minus |
Cpr65Av-RA | 642 | CG32405-RA | 348..440 | 115..23 | 195 | 80.6 | Minus |
Lcp65Ac-RA | 505 | CG6956-RA | 330..403 | 94..21 | 190 | 83.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6152280..6152587 | 16..323 | 1540 | 100 | Plus |
3L | 28110227 | 3L | 6139425..6139517 | 23..115 | 195 | 80.6 | Plus |
3L | 28110227 | 3L | 6143799..6143872 | 95..22 | 190 | 83.8 | Minus |
3L | 28110227 | 3L | 6145218..6145291 | 94..21 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:35:01 has no hits.
BS14101.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:46 Download gff for
BS14101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10297-PA | 1..318 | 17..334 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:11 Download gff for
BS14101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 62..388 | 12..339 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:31 Download gff for
BS14101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 62..388 | 12..339 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:31 Download gff for
BS14101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6152277..6152586 | 12..322 | 99 | <- | Plus |
3L | 6152668..6152684 | 323..339 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:11 Download gff for
BS14101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6145377..6145686 | 12..322 | 99 | <- | Plus |
arm_3L | 6145768..6145784 | 323..339 | 94 | | Plus |
BS14101.complete Sequence
350 bp assembled on 2006-11-01
GenBank Submission: FJ638858
> BS14101.complete
GAAGTTATCAGTCGACATGATGAAATTGATGCTAGTCGTTGGCTCGATAG
CCCTTCTCCTGGCCCTGGCCAGTGCCCGGCCGCAAAATGATGTGGAAGTT
CTTGAGTACGAATCGGAGAACACCGGCCTCGGCGGCTACAAGTTCAGCTA
CAAACTGAGCGATGGCACCAGTCGAACAGAGGAGGGCGTGGTCAACAACG
CGGGCACCGACAACGAATCCATATCCATTCGGGGATCCGTCACCTGGGTG
GCTCCCGATGGCCAAACCTACACCATTAACTTTGTGGCCGACGAGAACGG
TTTTCAGCCGGAGGGTGCCCATCTGCCCAAGTAGAAGCTTTCTAGACCAT
BS14101.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp65Aa-RA | 318 | CG10297-PA | 1..318 | 17..334 | 1590 | 100 | Plus |
Cpr65Av-RA | 336 | CG32405-PA | 235..327 | 236..328 | 195 | 80.6 | Plus |
Lcp65Ac-RA | 330 | CG6956-PA | 238..311 | 257..330 | 190 | 83.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp65Aa-RA | 615 | CG10297-RA | 65..385 | 15..335 | 1605 | 100 | Plus |
Cpr65Av-RA | 642 | CG32405-RA | 348..440 | 236..328 | 195 | 80.6 | Plus |
Lcp65Ac-RA | 505 | CG6956-RA | 330..403 | 257..330 | 190 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6152280..6152587 | 335..28 | 1540 | 100 | Minus |
3L | 28110227 | 3L | 6139425..6139517 | 328..236 | 195 | 80.6 | Minus |
3L | 28110227 | 3L | 6143799..6143872 | 256..329 | 190 | 83.8 | Plus |
3L | 28110227 | 3L | 6145218..6145291 | 257..330 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:45:26 has no hits.
BS14101.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:09 Download gff for
BS14101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 1..318 | 17..334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:26 Download gff for
BS14101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 62..388 | 12..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:08 Download gff for
BS14101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 67..384 | 17..334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:09 Download gff for
BS14101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 62..388 | 12..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:33 Download gff for
BS14101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 67..384 | 17..334 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:33 Download gff for
BS14101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6152281..6152591 | 21..334 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:08 Download gff for
BS14101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6145381..6145691 | 21..334 | 98 | | Minus |
BS14101.pep Sequence
Translation from 16 to 333
> BS14101.pep
MMKLMLVVGSIALLLALASARPQNDVEVLEYESENTGLGGYKFSYKLSDG
TSRTEEGVVNNAGTDNESISIRGSVTWVAPDGQTYTINFVADENGFQPEG
AHLPK*
BS14101.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp65Aa-PA | 105 | CG10297-PA | 1..105 | 1..105 | 536 | 100 | Plus |
Cpr65Av-PA | 111 | CG32405-PA | 8..109 | 5..104 | 293 | 52.4 | Plus |
Cpr65Ax1-PA | 102 | CG34270-PA | 10..97 | 14..104 | 264 | 58.2 | Plus |
Cpr65Ax2-PB | 102 | CG18777-PB | 10..97 | 14..104 | 264 | 58.2 | Plus |
Cpr65Ax2-PA | 102 | CG18777-PA | 10..97 | 14..104 | 264 | 58.2 | Plus |