Clone BS14101 Report

Search the DGRC for BS14101

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:141
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptAcp65Aa-RA
Protein status:BS14101.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14101.5prime Sequence

352 bp (352 high quality bases) assembled on 2006-10-13

> BS14101.5prime
GAAGTTATCAGTCGACATGATGAAATTGATGCTAGTCGTTGGCTCGATAG
CCCTTCTCCTGGCCCTGGCCAGTGCCCGGCCGCAAAATGATGTGGAAGTT
CTTGAGTACGAATCGGAGAACACCGGCCTCGGCGGCTACAAGTTCAGCTA
CAAACTGAGCGATGGCACCAGTCGAACAGAGGAGGGCGTGGTCAACAACG
CGGGCACCGACAACGAATCCATATCCATTCGGGGATCCGTCACCTGGGTG
GCTCCCGATGGCCAAACCTACACCATTAACTTTGTGGCCGACGAGAACGG
TTTTCAGCCGGAGGGTGCCCATCTGCCCAAGTAGAAGCTTTCTAGACCAT
TC

BS14101.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10297-PA 318 Acp65Aa-RA 1..318 17..334 1590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
Acp65Aa-RA 615 CG10297-RA 65..385 15..335 1605 100 Plus
Cpr65Av-RA 642 CG32405-RA 348..440 236..328 195 80.6 Plus
Lcp65Ac-RA 505 CG6956-RA 330..403 257..330 190 83.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6152280..6152587 335..28 1540 100 Minus
3L 28110227 3L 6139425..6139517 328..236 195 80.6 Minus
3L 28110227 3L 6143799..6143872 256..329 190 83.8 Plus
3L 28110227 3L 6145218..6145291 257..330 190 83.8 Plus
Blast to na_te.dros performed on 2015-02-10 16:47:04 has no hits.

BS14101.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:46 Download gff for BS14101.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10297-PA 1..318 17..334 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:37 Download gff for BS14101.5prime
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 62..388 12..339 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:17 Download gff for BS14101.5prime
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 62..388 12..339 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:17 Download gff for BS14101.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6152277..6152586 29..339 99 <- Minus
3L 6152668..6152684 12..28 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:37 Download gff for BS14101.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6145377..6145686 29..339 99 <- Minus
arm_3L 6145768..6145784 12..28 94   Minus

BS14101.3prime Sequence

348 bp (348 high quality bases) assembled on 2006-10-13

> BS14101.3prime
ATGGTCTAGAAAGCTTCTACTTGGGCAGATGGGCACCCTCCGGCTGAAAA
CCGTTCTCGTCGGCCACAAAGTTAATGGTGTAGGTTTGGCCATCGGGAGC
CACCCAGGTGACGGATCCCCGAATGGATATGGATTCGTTGTCGGTGCCCG
CGTTGTTGACCACGCCCTCCTCTGTTCGACTGGTGCCATCGCTCAGTTTG
TAGCTGAACTTGTAGCCGCCGAGGCCGGTGTTCTCCGATTCGTACTCAAG
AACTTCCACATCATTTTGCGGCCGGGCACTGGCCAGGGCCAGGAGAAGGG
CTATCGAGCCAACGACTAGCATCAATTTCATCATGTCGACTGATAACT

BS14101.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10297-PA 318 Acp65Aa-RA 1..318 334..17 1590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Acp65Aa-RA 615 CG10297-RA 65..385 336..16 1605 100 Minus
Cpr65Av-RA 642 CG32405-RA 348..440 115..23 195 80.6 Minus
Lcp65Ac-RA 505 CG6956-RA 330..403 94..21 190 83.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6152280..6152587 16..323 1540 100 Plus
3L 28110227 3L 6139425..6139517 23..115 195 80.6 Plus
3L 28110227 3L 6143799..6143872 95..22 190 83.8 Minus
3L 28110227 3L 6145218..6145291 94..21 190 83.8 Minus
Blast to na_te.dros performed on 2015-02-06 10:35:01 has no hits.

BS14101.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:46 Download gff for BS14101.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10297-PA 1..318 17..334 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:11 Download gff for BS14101.3prime
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 62..388 12..339 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:31 Download gff for BS14101.3prime
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 62..388 12..339 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:31 Download gff for BS14101.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6152277..6152586 12..322 99 <- Plus
3L 6152668..6152684 323..339 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:11 Download gff for BS14101.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6145377..6145686 12..322 99 <- Plus
arm_3L 6145768..6145784 323..339 94   Plus

BS14101.complete Sequence

350 bp assembled on 2006-11-01

GenBank Submission: FJ638858

> BS14101.complete
GAAGTTATCAGTCGACATGATGAAATTGATGCTAGTCGTTGGCTCGATAG
CCCTTCTCCTGGCCCTGGCCAGTGCCCGGCCGCAAAATGATGTGGAAGTT
CTTGAGTACGAATCGGAGAACACCGGCCTCGGCGGCTACAAGTTCAGCTA
CAAACTGAGCGATGGCACCAGTCGAACAGAGGAGGGCGTGGTCAACAACG
CGGGCACCGACAACGAATCCATATCCATTCGGGGATCCGTCACCTGGGTG
GCTCCCGATGGCCAAACCTACACCATTAACTTTGTGGCCGACGAGAACGG
TTTTCAGCCGGAGGGTGCCCATCTGCCCAAGTAGAAGCTTTCTAGACCAT

BS14101.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
Acp65Aa-RA 318 CG10297-PA 1..318 17..334 1590 100 Plus
Cpr65Av-RA 336 CG32405-PA 235..327 236..328 195 80.6 Plus
Lcp65Ac-RA 330 CG6956-PA 238..311 257..330 190 83.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
Acp65Aa-RA 615 CG10297-RA 65..385 15..335 1605 100 Plus
Cpr65Av-RA 642 CG32405-RA 348..440 236..328 195 80.6 Plus
Lcp65Ac-RA 505 CG6956-RA 330..403 257..330 190 83.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6152280..6152587 335..28 1540 100 Minus
3L 28110227 3L 6139425..6139517 328..236 195 80.6 Minus
3L 28110227 3L 6143799..6143872 256..329 190 83.8 Plus
3L 28110227 3L 6145218..6145291 257..330 190 83.8 Plus
Blast to na_te.dros performed on 2014-11-27 23:45:26 has no hits.

BS14101.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:09 Download gff for BS14101.complete
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 1..318 17..334 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:26 Download gff for BS14101.complete
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 62..388 12..339 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:08 Download gff for BS14101.complete
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 67..384 17..334 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:09 Download gff for BS14101.complete
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 62..388 12..339 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:33 Download gff for BS14101.complete
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 67..384 17..334 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:33 Download gff for BS14101.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6152281..6152591 21..334 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:08 Download gff for BS14101.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6145381..6145691 21..334 98   Minus

BS14101.pep Sequence

Translation from 16 to 333

> BS14101.pep
MMKLMLVVGSIALLLALASARPQNDVEVLEYESENTGLGGYKFSYKLSDG
TSRTEEGVVNNAGTDNESISIRGSVTWVAPDGQTYTINFVADENGFQPEG
AHLPK*

BS14101.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
Acp65Aa-PA 105 CG10297-PA 1..105 1..105 536 100 Plus
Cpr65Av-PA 111 CG32405-PA 8..109 5..104 293 52.4 Plus
Cpr65Ax1-PA 102 CG34270-PA 10..97 14..104 264 58.2 Plus
Cpr65Ax2-PB 102 CG18777-PB 10..97 14..104 264 58.2 Plus
Cpr65Ax2-PA 102 CG18777-PA 10..97 14..104 264 58.2 Plus