Clone Sequence Records
BS14102.3prime Sequence
568 bp (535 high quality bases) assembled on 2006-10-13
> BS14102.3prime
ATGGTCTAGAAAGCTTCTAACGCCGACGTCGCGTGCCCGCCACTCGGGAA
TAGGACTCGATGCAGGTCAGCAGGCTGAGCAGCTGTTGCTTCAGCGTCGA
GGGTATGTGGTATCCGTGGATAATCCTCCGTGGCGCGTTGCTCGTCCGGA
TCAGCCAGCGGGCGACCAGCCAGAGGCAGTTTTCGCGCAGCGATCTCATC
GGAAAGTGGATCAGCACTTCGCTGCGTACGTCAACCAGCTGATCCGGACT
CTGCTGGCTCTTGGGTACCCGCACCCGAATCGGCTGAAAGATCCTCTGCG
AGCGTACGTGCATCCGTTCGCCCGTGTAGTAATCCCGGAACAGCCAGCTG
TGTGTGGTGAACGTGTTCACCCGCACCTCCTCGAAGGGCTTGAGGGTAAG
GTACATGTTCTCCCGCTCCCGCTCGCACACCCAGTACAGATCCAGGGTGC
GATAGGTGGTGTTTGCAAACAGCACGTACACCTCCACCTTTCCCTGATCA
GCGCCCACCAGCTGCTGGCCGTCGCGGTTGTTCTGCGCTATTTGGAGCGC
CATGTCCAACTGATAACT
BS14102.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13221-PA | 537 | Vhl-RA | 1..537 | 553..17 | 2685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vhl-RB | 946 | CG13221-RB | 149..694 | 558..13 | 2700 | 99.6 | Minus |
| Vhl-RA | 1309 | CG13221-RA | 149..694 | 558..13 | 2700 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11279873..11280418 | 558..13 | 2700 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:47:32 has no hits.
BS14102.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:46 Download gff for
BS14102.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13221-PA | 1..537 | 17..553 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:40 Download gff for
BS14102.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 149..699 | 8..558 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:21 Download gff for
BS14102.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 149..699 | 8..558 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:21 Download gff for
BS14102.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11279873..11280423 | 8..558 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:40 Download gff for
BS14102.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7167378..7167928 | 8..558 | 99 | | Minus |
BS14102.5prime Sequence
568 bp (520 high quality bases) assembled on 2006-10-13
> BS14102.5prime
GAAGTTATCAGTCGACATGGCGCTCCAAATAGCGCAGAACAACCGCGACG
GCCAGCAGCTGGTGGGCGCTGATCAGGGAAAGGTGGAGGTGTACGTGCTG
TTTGCAAACACCACCTATCGCACCCTGGATCTGTACTGGGTGTGCGAGCG
GGAGCGGGAGAACATGTACCTTACCCTCAAGCCCTTCGAGGAGGTGCGGG
TGAACACGTTCACCACACACAGCTGGCTGTTCCGGGATTACTACACGGGC
GAACGGATGCACGTACGCTCGCAGAGGATCTTTCAGCCGATTCGGGTGCG
GGTACCCAAGAGCCAGCAGAGTCCGGATCAGCTGGTTGACGTACGCAGCG
AAGTGCTGATCCACTTTCCGATGAGATCGCTGCGCGAAAACTGCCTCTGG
CTGGTCGCCCGCTGGCTGATCCGGACGAGCAACGCGCCACGGAGGATTAT
CCACGGATACCACATACCCTCGACGCTGAAGCAACAGCTGCTCAGCCTGC
TGACCTGCATCGAGTCCTATTCCCGAATGGCGGGCACGCGACGTCGGCGT
TAGAAGCTTTCTAAGACC
BS14102.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13221-PA | 537 | Vhl-RA | 1..537 | 17..553 | 2660 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vhl-RB | 946 | CG13221-RB | 154..694 | 17..557 | 2675 | 99.6 | Plus |
| Vhl-RA | 1309 | CG13221-RA | 154..694 | 17..557 | 2675 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11279878..11280418 | 17..557 | 2675 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:19:13 has no hits.
BS14102.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:47 Download gff for
BS14102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13221-PA | 1..537 | 17..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:43 Download gff for
BS14102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 151..699 | 14..562 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:48 Download gff for
BS14102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 151..699 | 14..562 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:48 Download gff for
BS14102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11279875..11280423 | 14..562 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:43 Download gff for
BS14102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7167380..7167928 | 14..562 | 98 | | Plus |
BS14102.complete Sequence
569 bp assembled on 2006-11-01
GenBank Submission: FJ637600
> BS14102.complete
GAAGTTATCAGTCGACATGGCGCTCCAAATAGCGCAGAACAACCGCGACG
GCCAGCAGCTGGTGGGCGCTGATCAGGGAAAGGTGGAGGTGTACGTGCTG
TTTGCAAACACCACCTATCGCACCCTGGATCTGTACTGGGTGTGCGAGCG
GGAGCGGGAGAACATGTACCTTACCCTCAAGCCCTTCGAGGAGGTGCGGG
TGAACACGTTCACCACACACAGCTGGCTGTTCCGGGATTACTACACGGGC
GAACGGATGCACGTACGCTCGCAGAGGATCTTTCAGCCGATTCGGGTGCG
GGTACCCAAGAGCCAGCAGAGTCCGGATCAGCTGGTTGACGTACGCAGCG
AAGTGCTGATCCACTTTCCGATGAGATCGCTGCGCGAAAACTGCCTCTGG
CTGGTCGCCCGCTGGCTGATCCGGACGAGCAACGCGCCACGGAGGATTAT
CCACGGATACCACATACCCTCGACGCTGAAGCAACAGCTGCTCAGCCTGC
TGACCTGCATCGAGTCCTATTCCCGAGTGGCGGGCACGCGACGTCGGCGT
TAGAAGCTTTCTAGACCAT
BS14102.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vhl-RB | 537 | CG13221-PB | 1..537 | 17..553 | 2685 | 100 | Plus |
| Vhl-RA | 537 | CG13221-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vhl-RB | 946 | CG13221-RB | 154..694 | 17..557 | 2690 | 99.8 | Plus |
| Vhl-RA | 1309 | CG13221-RA | 154..694 | 17..557 | 2690 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11279878..11280418 | 17..557 | 2690 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:14:18 has no hits.
BS14102.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:32 Download gff for
BS14102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 1..537 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:19 Download gff for
BS14102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 150..698 | 14..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:10 Download gff for
BS14102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 154..690 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:32 Download gff for
BS14102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 150..698 | 14..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:51 Download gff for
BS14102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 154..690 | 17..553 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:51 Download gff for
BS14102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11279878..11280414 | 17..553 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:10 Download gff for
BS14102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7167383..7167919 | 17..553 | 100 | | Plus |
BS14102.pep Sequence
Translation from 16 to 552
> BS14102.pep
MALQIAQNNRDGQQLVGADQGKVEVYVLFANTTYRTLDLYWVCERERENM
YLTLKPFEEVRVNTFTTHSWLFRDYYTGERMHVRSQRIFQPIRVRVPKSQ
QSPDQLVDVRSEVLIHFPMRSLRENCLWLVARWLIRTSNAPRRIIHGYHI
PSTLKQQLLSLLTCIESYSRVAGTRRRR*
BS14102.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vhl-PB | 178 | CG13221-PB | 1..178 | 1..178 | 935 | 100 | Plus |
| Vhl-PA | 178 | CG13221-PA | 1..178 | 1..178 | 935 | 100 | Plus |
