Clone BS14108 Report

Search the DGRC for BS14108

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:141
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptPrBP-RA
Protein status:BS14108.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14108.3prime Sequence

486 bp (486 high quality bases) assembled on 2006-10-13

> BS14108.3prime
ATGGTCTAGAAAGCTTCTAAATGTAGTACAGGCGCACAACCGATTTGGTG
ATGAGTGTCTCGTTGTCGTAGAAACTGGTTTGGATAGTCACATTGCCGTT
CAAGACCTTGGCAGGCATCATCTGGGATTCGGGTGCCGCCTCGATTGTCG
ACTGCCAGGTGTTGGTGGTGTTGGCACCCACGAATCCCATCTCAAAGAAC
CACTCCTCCATGATGCGGCCCTTGAAGAGCACCTTCTGGTCCAGGCGAAA
GTTCTCCATCGACTCGATGGTGCTGAAGTTGATCTCCCGGGAAACGGCAC
GCATGTCGAGTATTTTCACCGGCACTCGGGCCTCATGTTCCTGGTCCGGT
GCCGAGAAGTCCTTGTTCTCCTGCCAGATTATTTTTCCGCTGTCGGCATC
CCGCAGAATCATATAGTTGATCTGGAATCCCTTCTGGATCCTGTCCCCGG
CACTCTGGTCGTCGGAGCCCATGTCGACTGATAACT

BS14108.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9296-PA 456 CG9296-RA 1..456 472..17 2255 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
PrBP-RA 1133 CG9296-RA 153..608 472..17 2265 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8685348..8685803 17..472 2265 99.8 Plus
Blast to na_te.dros performed on 2015-01-31 10:19:21 has no hits.

BS14108.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:50 Download gff for BS14108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9296-PA 1..456 17..472 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:44 Download gff for BS14108.3prime
Subject Subject Range Query Range Percent Splice Strand
PrBP-RA 148..610 13..480 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:50 Download gff for BS14108.3prime
Subject Subject Range Query Range Percent Splice Strand
PrBP-RA 148..610 13..480 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:50 Download gff for BS14108.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8685346..8685808 13..480 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:44 Download gff for BS14108.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8685346..8685808 13..480 98   Plus

BS14108.5prime Sequence

486 bp (486 high quality bases) assembled on 2006-10-13

> BS14108.5prime
GAAGTTATCAGTCGACATGGGCTCCGACGACCAGAGTGCCGGGGACAGGA
TCCAGAAGGGATTCCAGATCAACTATATGATTCTGCGGGATGCCGACAGC
GGAAAAATAATCTGGCAGGAGAACAAGGACTTCTCGGCACCGGACCAGGA
ACATGAGGCCCGAGTGCCGGTGAAAATACTCGACATGCGTGCCGTTTCCC
GGGAGATCAACTTCAGCACCATCGAGTCGATGGAGAACTTTCGCCTGGAC
CAGAAGGTGCTCTTCAAGGGCCGCATCATGGAGGAGTGGTTCTTTGAGAT
GGGATTCGTGGGTGCCAACACCACCAACACCTGGCAGTCGACAATCGAGG
CGGCACCCGAATCCCAGATGATGCCTGCCAAGGTCTTGAACGGCAATGTG
ACTATCCAAACCAGTTTCTACGACAACGAGACACTCATCACCAAATCGGT
TGTGCGCCTGTACTACATTTAGAAGCTTTCTAGACC

BS14108.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9296-PA 456 CG9296-RA 1..456 17..472 2255 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
PrBP-RA 1133 CG9296-RA 153..608 17..472 2265 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8685348..8685803 472..17 2265 99.8 Minus
Blast to na_te.dros performed on 2015-02-12 11:20:01 has no hits.

BS14108.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:50 Download gff for BS14108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9296-PA 1..456 17..472 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:39 Download gff for BS14108.5prime
Subject Subject Range Query Range Percent Splice Strand
PrBP-RA 148..610 9..476 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:43 Download gff for BS14108.5prime
Subject Subject Range Query Range Percent Splice Strand
PrBP-RA 148..610 9..476 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:43 Download gff for BS14108.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8685346..8685808 9..476 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:39 Download gff for BS14108.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8685346..8685808 9..476 98   Minus

BS14108.complete Sequence

488 bp assembled on 2006-11-01

GenBank Submission: FJ637601

> BS14108.complete
GAAGTTATCAGTCGACATGGGCTCCGACGACCAGAGTGCCGGGGACAGGA
TCCAGAAGGGATTCCAGATCAACTATATGATTCTGCGGGATGCCGACAGC
GGAAAAATAATCTGGCAGGAGAACAAGGACTTCTCGGCACCGGACCAGGA
ACATGAGGCCCGAGTGCCGGTGAAAATACTCGACATGCGTGCCGTTTCCC
GGGAGATCAACTTCAGCACCATCGAGTCGATGGAGAACTTTCGCCTGGAC
CAGAAGGTGCTCTTCAAGGGCCGCATCATGGAGGAGTGGTTCTTTGAGAT
GGGATTCGTGGGTGCCAACACCACCAACACCTGGCAGTCGACAATCGAGG
CGGCACCCGAATCCCAGATGATGCCTGCCAAGGTCTTGAACGGCAATGTG
ACTATCCAAACCAGTTTCTACGACAACGAGACACTCATCACCAAATCGGT
TGTGCGCCTGTACTACATTTAGAAGCTTTCTAGACCAT

BS14108.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
PrBP-RA 456 CG9296-PA 1..456 17..472 2265 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
PrBP-RA 1133 CG9296-RA 153..608 17..472 2265 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8685348..8685803 472..17 2265 99.8 Minus
Blast to na_te.dros performed on 2014-11-28 00:19:20 has no hits.

BS14108.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:59 Download gff for BS14108.complete
Subject Subject Range Query Range Percent Splice Strand
CG9296-RA 1..456 17..472 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:50 Download gff for BS14108.complete
Subject Subject Range Query Range Percent Splice Strand
CG9296-RA 147..609 9..476 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:56 Download gff for BS14108.complete
Subject Subject Range Query Range Percent Splice Strand
PrBP-RA 153..608 17..472 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:59 Download gff for BS14108.complete
Subject Subject Range Query Range Percent Splice Strand
CG9296-RA 147..609 9..476 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:24 Download gff for BS14108.complete
Subject Subject Range Query Range Percent Splice Strand
PrBP-RA 153..608 17..472 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:24 Download gff for BS14108.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8685348..8685803 17..472 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:56 Download gff for BS14108.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8685348..8685803 17..472 99   Minus

BS14108.pep Sequence

Translation from 16 to 471

> BS14108.pep
MGSDDQSAGDRIQKGFQINYMILRDADSGKIIWQENKDFSAPDQEHEARV
PVKILDMRAVSREINFSTIESMENFRLDQKVLFKGRIMEEWFFEMGFVGA
NTTNTWQSTIEAAPESQMMPAKVLNGNVTIQTSFYDNETLITKSVVRLYY
I*

BS14108.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
PrBP-PA 151 CG9296-PA 1..151 1..151 779 100 Plus