Clone Sequence Records
BS14111.3prime Sequence
541 bp (539 high quality bases) assembled on 2006-10-13
> BS14111.3prime
ATGGTCTAGAAAGCTTTTAATTTTGCTTATCCTCCTCCGCCTCCAAAGTA
TCTTCTTTGTCCGATGTCGTTTTCTTATTTCGCTCTGATTGTAGTTCCAC
GGAGATTTTCTTAATCGCCTCCAGATCGTGCAGTTTAATACGTCTGTTGT
TGGGATCCAAGCAGTTGACTTTGACCTCTATGAAGTCGCTCGTCTGCTGA
TCATCCCAACTGGAATATACAGAACTGGAGGTAAAGAGCAGCTCCTCCTC
CTCGGCAGCCGACTTGACCCGCAGATACTTCTGAAGCAGATTCGTTTGTT
CATCTTTGCGCCACAGACACAAGCGATTGTTCTTTAGCCAGTCGTTTTCC
ATAAGATCAGACTTTTTTACCAGCAAATCCAGTTGGCTTAACTTAACAAA
TTGCTTCTTGGGCGGCAGACTCTGGGGTCGCTTTGAAGTGCTGGCCGACG
GGTAGTCAAAGTCGTCGTCGCTGGGATCGGTTTCTAGGTCATCCTCTTCG
TCGGACTCCTCGTCGCTCACCTTGGCCATCCGGCGCTTGGC
BS14111.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13108-PA | 702 | CG13108-RA | 178..702 | 541..17 | 2625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13108-RA | 1021 | CG13108-RA | 291..815 | 541..17 | 2625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9164525..9164848 | 541..218 | 1620 | 100 | Minus |
| 2L | 23513712 | 2L | 9165020..9165220 | 217..17 | 1005 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:37:55 has no hits.
BS14111.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:51 Download gff for
BS14111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13108-PA | 178..702 | 17..541 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:18 Download gff for
BS14111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13108-RA | 291..824 | 8..541 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:42 Download gff for
BS14111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13108-RA | 291..824 | 8..541 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:42 Download gff for
BS14111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9164525..9164848 | 218..541 | 100 | -> | Minus |
| 2L | 9165020..9165229 | 8..217 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:18 Download gff for
BS14111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9164525..9164848 | 218..541 | 100 | -> | Minus |
| arm_2L | 9165020..9165229 | 8..217 | 98 | | Minus |
BS14111.5prime Sequence
502 bp (485 high quality bases) assembled on 2006-10-13
> BS14111.5prime
GAAGTTATCAGTCGACATGCGAAGTCGCACGGAACTGGTGACCACCACTT
TCGAGGAGAGCGACGAGGATGATTTCAGTCCGGACGATTCCGACTCCGAG
GAGGACTGGCGACCCACCAAGAAACGTCCGTCCAAGCCATCTGGCTCCGA
TGGCGGCAGGAAGCGGAAATCGGCGGCAGCCAATGCCTCGAAGGCCAAGC
GCCGGATGGCCAAGGTGAGCGACGAGGAGTCCGACGAAGAGGATGACCTA
GAAACCGATCCCAGCGACGACGACTTTGACTACCCGTCGGCCAGCACTTC
AAAGCGACCCCAGAGTCTGCCGCCCAAGAAGCAATTTGTTAAGTTAAGCC
AACTGGATTTGCTGGTAAAAAAGTCTGATCTTATGGAAAACGACTGGCTA
AAGAACAATCGCTTGTGTCTGTGGCGCAAAGATGAACAAACGAATCTGCT
TCAGAAGTATCTGCGGGTCAAGTCGGCTGCCGAGGAGGAGGAGCTGCTCT
TT
BS14111.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13108-PA | 702 | CG13108-RA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:16:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13108-RA | 1021 | CG13108-RA | 114..599 | 17..502 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9164348..9164833 | 17..502 | 2430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:15:59 has no hits.
BS14111.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:52 Download gff for
BS14111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13108-PA | 1..486 | 17..502 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:19 Download gff for
BS14111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13108-RA | 101..599 | 5..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:19 Download gff for
BS14111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13108-RA | 101..599 | 5..502 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:19 Download gff for
BS14111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9164335..9164833 | 5..502 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:19 Download gff for
BS14111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9164335..9164833 | 5..502 | 99 | | Plus |
BS14111.complete Sequence
734 bp assembled on 2006-11-01
GenBank Submission: FJ637602
> BS14111.complete
GAAGTTATCAGTCGACATGCGAAGTCGCACGGAACTGGTGACCACCACTT
TCGAGGAGAGCGACGAGGATGATTTCAGTCCGGACGATTCCGACTCCGAG
GAGGACTGGCGACCCACCAAGAAACGTCCGTCCAAGCCATCTGGCTCCGA
TGGCGGCAGGAAGCGGAAATCGGCGGCAGCCAATGCCTCGAAGGCCAAGC
GCCGGATGGCCAAGGTGAGCGACGAGGAGTCCGACGAAGAGGATGACCTA
GAAACCGATCCCAGCGACGACGACTTTGACTACCCGTCGGCCAGCACTTC
AAAGCGACCCCAGAGTCTGCCGCCCAAGAAGCAATTTGTTAAGTTAAGCC
AACTGGATTTGCTGGTAAAAAAGTCTGATCTTATGGAAAACGACTGGCTA
AAGAACAATCGCTTGTGTCTGTGGCGCAAAGATGAACAAACGAATCTGCT
TCAGAAGTATCTGCGGGTCAAGTCGGCTGCCGAGGAGGAGGAGCTGCTCT
TTACCTCCAGTTCTGTATATTCCAGTTGGGATGATCAGCAGACGAGCGAC
TTCATAGAGGTCAAAGTCAACTGCTTGGATCCCAACAACAGACGTATTAA
ACTGCACGATCTGGAGGCGATTAAGAAAATCTCCGTGGAACTACAATCAG
AGCGAAATAAGAAAACGACATCGGACAAAGAAGATACTTTGGAGGCGGAG
GAGGATAAGCAAAATTAAAAGCTTTCTAGACCAT
BS14111.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13108-RA | 702 | CG13108-PA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13108-RA | 1021 | CG13108-RA | 114..815 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9164348..9164848 | 17..517 | 2505 | 100 | Plus |
| 2L | 23513712 | 2L | 9165020..9165220 | 518..718 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:54:26 has no hits.
BS14111.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:48 Download gff for
BS14111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13108-RA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:05 Download gff for
BS14111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13108-RA | 101..824 | 5..727 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:07 Download gff for
BS14111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13108-RA | 114..807 | 17..710 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:48 Download gff for
BS14111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13108-RA | 101..824 | 5..727 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:46 Download gff for
BS14111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13108-RA | 114..807 | 17..710 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:46 Download gff for
BS14111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9164348..9164848 | 17..517 | 100 | -> | Plus |
| 2L | 9165020..9165212 | 518..710 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:07 Download gff for
BS14111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9164348..9164848 | 17..517 | 100 | -> | Plus |
| arm_2L | 9165020..9165212 | 518..710 | 100 | | Plus |
BS14111.pep Sequence
Translation from 16 to 717
> BS14111.pep
MRSRTELVTTTFEESDEDDFSPDDSDSEEDWRPTKKRPSKPSGSDGGRKR
KSAAANASKAKRRMAKVSDEESDEEDDLETDPSDDDFDYPSASTSKRPQS
LPPKKQFVKLSQLDLLVKKSDLMENDWLKNNRLCLWRKDEQTNLLQKYLR
VKSAAEEEELLFTSSSVYSSWDDQQTSDFIEVKVNCLDPNNRRIKLHDLE
AIKKISVELQSERNKKTTSDKEDTLEAEEDKQN*
BS14111.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13108-PA | 233 | CG13108-PA | 1..233 | 1..233 | 1200 | 100 | Plus |
