Clone BS14116 Report

Search the DGRC for BS14116

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:141
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG14618-RA
Protein status:BS14116.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14116.3prime Sequence

659 bp (599 high quality bases) assembled on 2006-10-13

> BS14116.3prime
ATGGTCTAGAAAGCTTTCAACTGTCTAAAGAATGGGATTCGATTTCAGAC
TCGACGGCGGTTAAGGTGGGCTTATCTGACTCAGCTTCCTGTTTCTGTTT
TTCATCCTGCTGCTCCAAGCAATGATTCGGCTCCTTTTTGTCTGTGATTT
TCGCCTTGGCTCCCTTGCGCATGGGAATAGTTTCCAGAATGGCCGTAGTC
CAGTCCTGACCGGCAGCAACTTTGGTCAGCAGCTCAAACACATGGTAGGT
GCTCAGCACGGCCCTCGTCTTCATGTCTACATGCTCGCTAAGCGGGAGGC
GAGCGGTAGTCAGCCCCGCCGACGTGGCCCTCGAGTGGCACAGGCCCTTG
AAGTGATTGTGGTCCACCAGGCCACCGATGACGTAGGTGCAGCCGGGCTG
CAGCTTGTCCAACACCCGATCCGACTCGCAGGTGAGGTAGACCAGTTGGC
TATGCTCGAAAATATCGGTGTGCCCGCGATCGAAGTAGTACTGCACGTGC
CAGTTCTCCCAGCCTTCGTTCTTCTTGAATGACTCGTGGATGTGACCGTT
GCGCCGGATGCCTGTGAAGTGCAGATTGCCCGGCTGTGGGCTGCGCCGAT
TAATGGTGTAAATGCGAAGGCACTGCTTTCCGCACTTGACGATGTCCCGT
TCCTGCATC

BS14116.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14618-PA 960 CG14618-RA 318..960 659..17 3140 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14618-RA 1210 CG14618-RA 430..1072 659..17 3170 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22474127..22474545 659..241 2050 99.3 Minus
X 23542271 X 22474636..22474860 241..17 1125 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:02:00 has no hits.

BS14116.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:55 Download gff for BS14116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14618-PA 318..960 17..659 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:51 Download gff for BS14116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 430..1080 9..659 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:28 Download gff for BS14116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 430..1080 9..659 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:28 Download gff for BS14116.3prime
Subject Subject Range Query Range Percent Splice Strand
X 22474127..22474545 241..659 99 -> Minus
X 22474637..22474865 14..240 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:51 Download gff for BS14116.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21875963..21876381 241..659 99 -> Minus
arm_X 21876473..21876701 14..240 98 -> Minus

BS14116.5prime Sequence

630 bp (628 high quality bases) assembled on 2006-10-13

> BS14116.5prime
GAAGTTATCAGTCGACATGGATACGACAGAAAAGGCTCTCAAGGAGGTGA
CCCCGGCGATGCTTAGCCTGAACAATTGCCCGGGCACAACGCCCGGCACG
CCGATGAGCAAAAATCAGCTTAAGAAGCAGCGAAAGCTGGCGGAGTTTGC
CGAACTCCGGAAGCTGCGACGCGAACGGGAGCGTGAGAAGAAAAAGCAGA
AGCGGCGGGAGGCCAAGGAGCTGGGTCTGCCCGTCCGGACGGGACCCTCC
CGCAAGGAGCTGAAGAAACGCCAGTTGGCAGACGGCGGAAAGTCTGGCCT
CTCGGTCGCTATAGATCTGGACTACGACGATCTGATGCAGGAACGGGACA
TCGTCAAGTGCGTGAAGCAGTGCCTTCGCATCTACACCATTAATCGGCGC
AGCCCACAGCCGGGCAATCTGCACTTCACAGGCATCCGGCGCAACGGTCA
CATCCACGAGTCATTCAAGAAGAACGAAGGCTGGGAGAACTGGCACGTGC
AGTACTACTTCGATCGCGGGCACACCGATATTTTCGAGCATAGCCAACTG
GTCTACCTCACCTGCGAGTCGGATCGGGTGTTGGACAAGCTGCAGCCCGG
CTGCACCTACGTCATCGGTGGCCTGGTGGA

BS14116.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14618-PA 960 CG14618-RA 1..614 17..630 3070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14618-RA 1210 CG14618-RA 113..726 17..630 3070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22473810..22474423 17..630 3070 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:12:20 has no hits.

BS14116.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:55 Download gff for BS14116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14618-PA 1..613 17..629 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:44 Download gff for BS14116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 102..725 6..629 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:22 Download gff for BS14116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 102..725 6..629 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:22 Download gff for BS14116.5prime
Subject Subject Range Query Range Percent Splice Strand
X 22473799..22474422 6..629 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:44 Download gff for BS14116.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21875635..21876258 6..629 99   Plus

BS14116.complete Sequence

992 bp assembled on 2006-11-01

GenBank Submission: FJ637603

> BS14116.complete
GAAGTTATCAGTCGACATGGATACGACAGAAAAGGCTCTCAAGGAGGTGA
CCCCGGCGATGCTTAGCCTGAACAATTGCCCGGGCACAACGCCCGGCACG
CCGATGAGCAAAAATCAGCTTAAGAAGCAGCGAAAGCTGGCGGAGTTTGC
CGAACTCCGGAAGCTGCGACGCGAACGGGAGCGTGAGAAGAAAAAGCAGA
AGCGGCGGGAGGCCAAGGAGCTGGGTCTGCCCGTCCGGACGGGACCCTCC
CGCAAGGAGCTGAAGAAACGCCAGTTGGCAGACGGCGGAAAGTCTGGCCT
CTCGGTCGCTATAGATCTGGACTACGACGATCTGATGCAGGAACGGGACA
TCGTCAAGTGCGTGAAGCAGTGCCTTCGCATCTACACCATTAATCGGCGC
AGCCCACAGCCGGGCAATCTGCACTTCACAGGCATCCGGCGCAACGGTCA
CATCCACGAGTCATTCAAGAAGAACGAAGGCTGGGAGAACTGGCACGTGC
AGTACTACTTCGATCGCGGGCACACCGATATTTTCGAGCATAGCCAACTG
GTCTACCTCACCTGCGAGTCGGATCGGGTGTTGGACAAGCTGCAGCCCGG
CTGCACCTACGTCATCGGTGGCCTGGTGGACCACAATCACTTCAAGGGCC
TGTGCCACTCGAGGGCCACGTCGGCGGGGCTGACTACCGCTCGCCTCCCG
CTTAGCGAGCATGTAGACATGAAGACGAGGGCCGTGCTGAGCACCTACCA
TGTGTTTGAGCTGCTGACCAAAGTTGCTGCCGGTCAGGACTGGACTACGG
CCATTCTGGAAACTATTCCCATGCGCAAGGGAGCCAAGGCGAAAATCACA
GACAAAAAGGAGCCGAATCATTGCTTGGAGCAGCAGGATGAAAAACAGAA
ACAGGAAGCTGAGTCAGATAAGCCCACCTTAACCGCCGTCGAGTCTGAAA
TCGAATCCCATTCTTTAGACAGTTGAAAGCTTTCTAGACCAT

BS14116.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14618-RA 960 CG14618-PA 1..960 17..976 4800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14618-RA 1210 CG14618-RA 113..1072 17..976 4800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22473810..22474545 17..752 3680 100 Plus
X 23542271 X 22474636..22474860 752..976 1125 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:16:09 has no hits.

BS14116.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:49 Download gff for BS14116.complete
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 1..960 17..976 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:06 Download gff for BS14116.complete
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 70..1048 6..984 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:13 Download gff for BS14116.complete
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 113..1071 17..975 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:50 Download gff for BS14116.complete
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 70..1048 6..984 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:54 Download gff for BS14116.complete
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 113..1071 17..975 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:54 Download gff for BS14116.complete
Subject Subject Range Query Range Percent Splice Strand
X 22473810..22474545 17..752 100 -> Plus
X 22474637..22474859 753..975 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:13 Download gff for BS14116.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21875646..21876381 17..752 100 -> Plus
arm_X 21876473..21876695 753..975 100   Plus

BS14116.pep Sequence

Translation from 16 to 975

> BS14116.pep
MDTTEKALKEVTPAMLSLNNCPGTTPGTPMSKNQLKKQRKLAEFAELRKL
RREREREKKKQKRREAKELGLPVRTGPSRKELKKRQLADGGKSGLSVAID
LDYDDLMQERDIVKCVKQCLRIYTINRRSPQPGNLHFTGIRRNGHIHESF
KKNEGWENWHVQYYFDRGHTDIFEHSQLVYLTCESDRVLDKLQPGCTYVI
GGLVDHNHFKGLCHSRATSAGLTTARLPLSEHVDMKTRAVLSTYHVFELL
TKVAAGQDWTTAILETIPMRKGAKAKITDKKEPNHCLEQQDEKQKQEAES
DKPTLTAVESEIESHSLDS*

BS14116.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14618-PA 319 CG14618-PA 1..319 1..319 1679 100 Plus
CG5190-PA 446 CG5190-PA 127..384 43..285 174 22.3 Plus