Clone Sequence Records
BS14116.3prime Sequence
659 bp (599 high quality bases) assembled on 2006-10-13
> BS14116.3prime
ATGGTCTAGAAAGCTTTCAACTGTCTAAAGAATGGGATTCGATTTCAGAC
TCGACGGCGGTTAAGGTGGGCTTATCTGACTCAGCTTCCTGTTTCTGTTT
TTCATCCTGCTGCTCCAAGCAATGATTCGGCTCCTTTTTGTCTGTGATTT
TCGCCTTGGCTCCCTTGCGCATGGGAATAGTTTCCAGAATGGCCGTAGTC
CAGTCCTGACCGGCAGCAACTTTGGTCAGCAGCTCAAACACATGGTAGGT
GCTCAGCACGGCCCTCGTCTTCATGTCTACATGCTCGCTAAGCGGGAGGC
GAGCGGTAGTCAGCCCCGCCGACGTGGCCCTCGAGTGGCACAGGCCCTTG
AAGTGATTGTGGTCCACCAGGCCACCGATGACGTAGGTGCAGCCGGGCTG
CAGCTTGTCCAACACCCGATCCGACTCGCAGGTGAGGTAGACCAGTTGGC
TATGCTCGAAAATATCGGTGTGCCCGCGATCGAAGTAGTACTGCACGTGC
CAGTTCTCCCAGCCTTCGTTCTTCTTGAATGACTCGTGGATGTGACCGTT
GCGCCGGATGCCTGTGAAGTGCAGATTGCCCGGCTGTGGGCTGCGCCGAT
TAATGGTGTAAATGCGAAGGCACTGCTTTCCGCACTTGACGATGTCCCGT
TCCTGCATC
BS14116.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14618-PA | 960 | CG14618-RA | 318..960 | 659..17 | 3140 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14618-RA | 1210 | CG14618-RA | 430..1072 | 659..17 | 3170 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22474127..22474545 | 659..241 | 2050 | 99.3 | Minus |
X | 23542271 | X | 22474636..22474860 | 241..17 | 1125 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:02:00 has no hits.
BS14116.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:55 Download gff for
BS14116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-PA | 318..960 | 17..659 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:51 Download gff for
BS14116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 430..1080 | 9..659 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:28 Download gff for
BS14116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 430..1080 | 9..659 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:28 Download gff for
BS14116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22474127..22474545 | 241..659 | 99 | -> | Minus |
X | 22474637..22474865 | 14..240 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:51 Download gff for
BS14116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21875963..21876381 | 241..659 | 99 | -> | Minus |
arm_X | 21876473..21876701 | 14..240 | 98 | -> | Minus |
BS14116.5prime Sequence
630 bp (628 high quality bases) assembled on 2006-10-13
> BS14116.5prime
GAAGTTATCAGTCGACATGGATACGACAGAAAAGGCTCTCAAGGAGGTGA
CCCCGGCGATGCTTAGCCTGAACAATTGCCCGGGCACAACGCCCGGCACG
CCGATGAGCAAAAATCAGCTTAAGAAGCAGCGAAAGCTGGCGGAGTTTGC
CGAACTCCGGAAGCTGCGACGCGAACGGGAGCGTGAGAAGAAAAAGCAGA
AGCGGCGGGAGGCCAAGGAGCTGGGTCTGCCCGTCCGGACGGGACCCTCC
CGCAAGGAGCTGAAGAAACGCCAGTTGGCAGACGGCGGAAAGTCTGGCCT
CTCGGTCGCTATAGATCTGGACTACGACGATCTGATGCAGGAACGGGACA
TCGTCAAGTGCGTGAAGCAGTGCCTTCGCATCTACACCATTAATCGGCGC
AGCCCACAGCCGGGCAATCTGCACTTCACAGGCATCCGGCGCAACGGTCA
CATCCACGAGTCATTCAAGAAGAACGAAGGCTGGGAGAACTGGCACGTGC
AGTACTACTTCGATCGCGGGCACACCGATATTTTCGAGCATAGCCAACTG
GTCTACCTCACCTGCGAGTCGGATCGGGTGTTGGACAAGCTGCAGCCCGG
CTGCACCTACGTCATCGGTGGCCTGGTGGA
BS14116.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14618-PA | 960 | CG14618-RA | 1..614 | 17..630 | 3070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:12:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14618-RA | 1210 | CG14618-RA | 113..726 | 17..630 | 3070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22473810..22474423 | 17..630 | 3070 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:12:20 has no hits.
BS14116.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:55 Download gff for
BS14116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-PA | 1..613 | 17..629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:44 Download gff for
BS14116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 102..725 | 6..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:22 Download gff for
BS14116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 102..725 | 6..629 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:22 Download gff for
BS14116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22473799..22474422 | 6..629 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:44 Download gff for
BS14116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21875635..21876258 | 6..629 | 99 | | Plus |
BS14116.complete Sequence
992 bp assembled on 2006-11-01
GenBank Submission: FJ637603
> BS14116.complete
GAAGTTATCAGTCGACATGGATACGACAGAAAAGGCTCTCAAGGAGGTGA
CCCCGGCGATGCTTAGCCTGAACAATTGCCCGGGCACAACGCCCGGCACG
CCGATGAGCAAAAATCAGCTTAAGAAGCAGCGAAAGCTGGCGGAGTTTGC
CGAACTCCGGAAGCTGCGACGCGAACGGGAGCGTGAGAAGAAAAAGCAGA
AGCGGCGGGAGGCCAAGGAGCTGGGTCTGCCCGTCCGGACGGGACCCTCC
CGCAAGGAGCTGAAGAAACGCCAGTTGGCAGACGGCGGAAAGTCTGGCCT
CTCGGTCGCTATAGATCTGGACTACGACGATCTGATGCAGGAACGGGACA
TCGTCAAGTGCGTGAAGCAGTGCCTTCGCATCTACACCATTAATCGGCGC
AGCCCACAGCCGGGCAATCTGCACTTCACAGGCATCCGGCGCAACGGTCA
CATCCACGAGTCATTCAAGAAGAACGAAGGCTGGGAGAACTGGCACGTGC
AGTACTACTTCGATCGCGGGCACACCGATATTTTCGAGCATAGCCAACTG
GTCTACCTCACCTGCGAGTCGGATCGGGTGTTGGACAAGCTGCAGCCCGG
CTGCACCTACGTCATCGGTGGCCTGGTGGACCACAATCACTTCAAGGGCC
TGTGCCACTCGAGGGCCACGTCGGCGGGGCTGACTACCGCTCGCCTCCCG
CTTAGCGAGCATGTAGACATGAAGACGAGGGCCGTGCTGAGCACCTACCA
TGTGTTTGAGCTGCTGACCAAAGTTGCTGCCGGTCAGGACTGGACTACGG
CCATTCTGGAAACTATTCCCATGCGCAAGGGAGCCAAGGCGAAAATCACA
GACAAAAAGGAGCCGAATCATTGCTTGGAGCAGCAGGATGAAAAACAGAA
ACAGGAAGCTGAGTCAGATAAGCCCACCTTAACCGCCGTCGAGTCTGAAA
TCGAATCCCATTCTTTAGACAGTTGAAAGCTTTCTAGACCAT
BS14116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14618-RA | 960 | CG14618-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14618-RA | 1210 | CG14618-RA | 113..1072 | 17..976 | 4800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22473810..22474545 | 17..752 | 3680 | 100 | Plus |
X | 23542271 | X | 22474636..22474860 | 752..976 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:16:09 has no hits.
BS14116.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:49 Download gff for
BS14116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 1..960 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:06 Download gff for
BS14116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 70..1048 | 6..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:13 Download gff for
BS14116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 113..1071 | 17..975 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:50 Download gff for
BS14116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 70..1048 | 6..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:54 Download gff for
BS14116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 113..1071 | 17..975 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:54 Download gff for
BS14116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22473810..22474545 | 17..752 | 100 | -> | Plus |
X | 22474637..22474859 | 753..975 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:13 Download gff for
BS14116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21875646..21876381 | 17..752 | 100 | -> | Plus |
arm_X | 21876473..21876695 | 753..975 | 100 | | Plus |
BS14116.pep Sequence
Translation from 16 to 975
> BS14116.pep
MDTTEKALKEVTPAMLSLNNCPGTTPGTPMSKNQLKKQRKLAEFAELRKL
RREREREKKKQKRREAKELGLPVRTGPSRKELKKRQLADGGKSGLSVAID
LDYDDLMQERDIVKCVKQCLRIYTINRRSPQPGNLHFTGIRRNGHIHESF
KKNEGWENWHVQYYFDRGHTDIFEHSQLVYLTCESDRVLDKLQPGCTYVI
GGLVDHNHFKGLCHSRATSAGLTTARLPLSEHVDMKTRAVLSTYHVFELL
TKVAAGQDWTTAILETIPMRKGAKAKITDKKEPNHCLEQQDEKQKQEAES
DKPTLTAVESEIESHSLDS*
BS14116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14618-PA | 319 | CG14618-PA | 1..319 | 1..319 | 1679 | 100 | Plus |
CG5190-PA | 446 | CG5190-PA | 127..384 | 43..285 | 174 | 22.3 | Plus |