Clone Sequence Records
BS14117.3prime Sequence
515 bp (499 high quality bases) assembled on 2006-10-13
> BS14117.3prime
ATGGTCTAGAAAGCTTTTAGCGGCGCTTGCCCTTTCCCTTCTTGCCGCCA
CCACCACCCCCAGATCCGGATGCATTCGACTGTGGCTGCGACTGCTGGTG
GTACGAGTCGCCGGATTTGTTCTGTCGCGTCTTCAGCTGCGGTATCTTGC
TGGCGATATGCAGCATGATGGACTCGCGCGTGGGAAAGTCATTATTGTAC
AAAGTGCCATCGACATTACGCAGCTGGACGCGCACACGACCACGGAACTC
CATCTCGCTGCTGTTCTCGCGACAGTACTTCTTGTTCTCCATGAGGAACT
GCAAGTTGGAAACGGACAGCACATCGCGAATCTCAATATAGCTGGGATTG
TCTACACAGTTCTCCTTGGGCAGCCGTCGACCCTCCTGGCGTGTCTTTTT
CCTATTGATGTAGGCGGGATATATGCAAATCCATCGCTCCATATCGTTGT
GTTTCATGCTGGGGCTCCAGTTTTTTTTCATGGGAACTGCTGTCGCCATG
TCGACTGATAACTTC
BS14117.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4457-PA | 483 | Srp19-RA | 1..483 | 499..17 | 2415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp19-RA | 653 | CG4457-RA | 114..596 | 499..17 | 2415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7347367..7347785 | 17..435 | 2095 | 100 | Plus |
| 3L | 28110227 | 3L | 7347857..7347921 | 435..499 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:12:32 has no hits.
BS14117.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:56 Download gff for
BS14117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4457-PA | 1..483 | 17..499 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:45 Download gff for
BS14117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp19-RA | 112..602 | 11..502 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:25 Download gff for
BS14117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp19-RA | 112..602 | 11..502 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:25 Download gff for
BS14117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7347361..7347784 | 11..434 | 99 | <- | Plus |
| 3L | 7347857..7347923 | 435..502 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:45 Download gff for
BS14117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7340461..7340884 | 11..434 | 99 | <- | Plus |
| arm_3L | 7340957..7341023 | 435..502 | 98 | | Plus |
BS14117.5prime Sequence
504 bp (489 high quality bases) assembled on 2006-10-13
> BS14117.5prime
GAAGTTATCAGTCGACATGGCGACAGCAGTTCCCATGAAAAAAAACTGGA
GCCCCAGCATGAAACACAACGATATGGAGCGATGGATTTGCATATATCCC
GCCTACATCAATAGGAAAAAGACACGCCAGGAGGGTCGACGGCTGCCCAA
GGAGAACTGTGTAGACAATCCCAGCTATATTGAGATTCGCGATGTGCTGT
CCGTTTCCAACTTGCAGTTCCTCATGGAGAACAAGAAGTACTGTCGCGAG
AACAGCAGCGAGATGGAGTTCCGTGGTCGTGTGCGCGTCCAGCTGCGTAA
TGTCGATGGCACTTTGTACAATAATGACTTTCCCACGCGCGAGTCCATCA
TGCTGCATATCGCCAGCAAGATACCGCAGCTGAAGACGCGACAGAACAAA
TCCGGCGACTCGTACCACCAGCAGTCGCAGCCACAGTCGAATGCATCCGG
ATCTGGGGGGTGGTGGTGGCGGCAAGAAGGGAAAGGGCAAGCGCCGCTAA
AAGC
BS14117.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4457-PA | 483 | Srp19-RA | 1..443 | 17..459 | 2215 | 100 | Plus |
| CG4457-PA | 483 | Srp19-RA | 439..483 | 456..500 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp19-RA | 653 | CG4457-RA | 114..596 | 17..500 | 2395 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7347367..7347785 | 500..81 | 2050 | 99.8 | Minus |
| 3L | 28110227 | 3L | 7347857..7347921 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:02:03 has no hits.
BS14117.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:56 Download gff for
BS14117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4457-PA | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:53 Download gff for
BS14117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp19-RA | 112..598 | 14..504 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:37 Download gff for
BS14117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp19-RA | 112..598 | 14..504 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:37 Download gff for
BS14117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7347363..7347784 | 82..504 | 99 | <- | Minus |
| 3L | 7347857..7347923 | 14..81 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:53 Download gff for
BS14117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7340463..7340884 | 82..504 | 99 | <- | Minus |
| arm_3L | 7340957..7341023 | 14..81 | 98 | | Minus |
BS14117.complete Sequence
515 bp assembled on 2006-11-01
GenBank Submission: FJ637604
> BS14117.complete
GAAGTTATCAGTCGACATGGCGACAGCAGTTCCCATGAAAAAAAACTGGA
GCCCCAGCATGAAACACAACGATATGGAGCGATGGATTTGCATATATCCC
GCCTACATCAATAGGAAAAAGACACGCCAGGAGGGTCGACGGCTGCCCAA
GGAGAACTGTGTAGACAATCCCAGCTATATTGAGATTCGCGATGTGCTGT
CCGTTTCCAACTTGCAGTTCCTCATGGAGAACAAGAAGTACTGTCGCGAG
AACAGCAGCGAGATGGAGTTCCGTGGTCGTGTGCGCGTCCAGCTGCGTAA
TGTCGATGGCACTTTGTACAATAATGACTTTCCCACGCGCGAGTCCATCA
TGCTGCATATCGCCAGCAAGATACCGCAGCTGAAGACGCGACAGAACAAA
TCCGGCGACTCGTACCACCAGCAGTCGCAGCCACAGTCGAATGCATCCGG
ATCTGGGGGTGGTGGTGGCGGCAAGAAGGGAAAGGGCAAGCGCCGCTAAA
AGCTTTCTAGACCAT
BS14117.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp19-RA | 483 | CG4457-PA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp19-RA | 653 | CG4457-RA | 114..596 | 17..499 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7347367..7347785 | 499..81 | 2095 | 100 | Minus |
| 3L | 28110227 | 3L | 7347857..7347921 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:59:42 has no hits.
BS14117.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:51 Download gff for
BS14117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp19-RA | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:08 Download gff for
BS14117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp19-RA | 92..582 | 14..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:46 Download gff for
BS14117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp19-RA | 114..594 | 17..497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:51 Download gff for
BS14117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp19-RA | 92..582 | 14..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:44 Download gff for
BS14117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp19-RA | 114..594 | 17..497 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:44 Download gff for
BS14117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7347369..7347784 | 82..497 | 100 | <- | Minus |
| 3L | 7347857..7347921 | 17..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:46 Download gff for
BS14117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7340469..7340884 | 82..497 | 100 | <- | Minus |
| arm_3L | 7340957..7341021 | 17..81 | 100 | | Minus |
BS14117.pep Sequence
Translation from 16 to 498
> BS14117.pep
MATAVPMKKNWSPSMKHNDMERWICIYPAYINRKKTRQEGRRLPKENCVD
NPSYIEIRDVLSVSNLQFLMENKKYCRENSSEMEFRGRVRVQLRNVDGTL
YNNDFPTRESIMLHIASKIPQLKTRQNKSGDSYHQQSQPQSNASGSGGGG
GGKKGKGKRR*
BS14117.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp19-PA | 160 | CG4457-PA | 1..160 | 1..160 | 853 | 100 | Plus |
