Clone BS14122 Report

Search the DGRC for BS14122

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:141
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptIM23-RA
Protein status:BS14122.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14122.5prime Sequence

384 bp (384 high quality bases) assembled on 2006-10-13

> BS14122.5prime
GAAGTTATCAGTCGACATGAAGTGCCTGATTCTGTCCTTTGCAATTTTCG
TTGTCCTGGCTTCCCAGGCTACGGCCGGAAATGTGATTATCGGCGGAGTA
TGCCAGGATTGCAGTCCGCCGGTGGCGGAAAACGTCGTAGTCGGTGGCCA
ATCCTACAGGACGGGTAGGCCGGGCCAGGGAACGGTGTATATCAATTCCC
CTGGCGCATATCTAGGAGCTCTCGATGGTCCCATTCGGCGAACTGGCGCT
GGCGGCGGAGGAGGCGGTGGCGCCCAGTATCCGGATGGTTACAGTGGTCG
TCTGCCAGGTGGCACTTACCTTCACAATAAGGATTGCGTGGGCTGCAGCA
TCAGCGGGGGCGGGGATTAAAAGCTTTCTAGACC

BS14122.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15066-PA 354 IM23-RA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
IM23-RA 468 CG15066-RA 33..386 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18382786..18383082 370..74 1485 100 Minus
2R 25286936 2R 18383146..18383203 74..17 290 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:22:09 has no hits.

BS14122.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:01 Download gff for BS14122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15066-PA 1..354 17..370 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:30 Download gff for BS14122.5prime
Subject Subject Range Query Range Percent Splice Strand
IM23-RA 31..386 14..370 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:23 Download gff for BS14122.5prime
Subject Subject Range Query Range Percent Splice Strand
IM23-RA 31..386 14..370 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:23 Download gff for BS14122.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18382786..18383081 75..370 100 <- Minus
2R 18383146..18383205 14..74 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:30 Download gff for BS14122.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14270291..14270586 75..370 100 <- Minus
arm_2R 14270651..14270710 14..74 98   Minus

BS14122.3prime Sequence

384 bp (384 high quality bases) assembled on 2006-10-13

> BS14122.3prime
ATGGTCTAGAAAGCTTTTAATCCCCGCCCCCGCTGATGCTGCAGCCCACG
CAATCCTTATTGTGAAGGTAAGTGCCACCTGGCAGACGACCACTGTAACC
ATCCGGATACTGGGCGCCACCGCCTCCTCCGCCGCCAGCGCCAGTTCGCC
GAATGGGACCATCGAGAGCTCCTAGATATGCGCCAGGGGAATTGATATAC
ACCGTTCCCTGGCCCGGCCTACCCGTCCTGTAGGATTGGCCACCGACTAC
GACGTTTTCCGCCACCGGCGGACTGCAATCCTGGCATACTCCGCCGATAA
TCACATTTCCGGCCGTAGCCTGGGAAGCCAGGACAACGAAAATTGCAAAG
GACAGAATCAGGCACTTCATGTCGACTGATAACT

BS14122.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG15066-PA 354 IM23-RA 1..354 370..17 1770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
IM23-RA 468 CG15066-RA 33..386 370..17 1770 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18382786..18383082 17..313 1485 100 Plus
2R 25286936 2R 18383146..18383203 313..370 290 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:43:04 has no hits.

BS14122.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:00 Download gff for BS14122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15066-PA 1..354 17..370 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:41 Download gff for BS14122.3prime
Subject Subject Range Query Range Percent Splice Strand
IM23-RA 31..386 17..373 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:22 Download gff for BS14122.3prime
Subject Subject Range Query Range Percent Splice Strand
IM23-RA 31..386 17..373 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:22 Download gff for BS14122.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18382786..18383081 17..312 100 <- Plus
2R 18383146..18383205 313..373 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:41 Download gff for BS14122.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14270291..14270586 17..312 100 <- Plus
arm_2R 14270651..14270710 313..373 98   Plus

BS14122.complete Sequence

386 bp assembled on 2006-11-01

GenBank Submission: FJ637605

> BS14122.complete
GAAGTTATCAGTCGACATGAAGTGCCTGATTCTGTCCTTTGCAATTTTCG
TTGTCCTGGCTTCCCAGGCTACGGCCGGAAATGTGATTATCGGCGGAGTA
TGCCAGGATTGCAGTCCGCCGGTGGCGGAAAACGTCGTAGTCGGTGGCCA
ATCCTACAGGACGGGTAGGCCGGGCCAGGGAACGGTGTATATCAATTCCC
CTGGCGCATATCTAGGAGCTCTCGATGGTCCCATTCGGCGAACTGGCGCT
GGCGGCGGAGGAGGCGGTGGCGCCCAGTATCCGGATGGTTACAGTGGTCG
TCTGCCAGGTGGCACTTACCTTCACAATAAGGATTGCGTGGGCTGCAGCA
TCAGCGGGGGCGGGGATTAAAAGCTTTCTAGACCAT

BS14122.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
IM23-RA 354 CG15066-PA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
IM23-RA 468 CG15066-RA 33..386 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18382786..18383082 370..74 1485 100 Minus
2R 25286936 2R 18383146..18383203 74..17 290 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:02:29 has no hits.

BS14122.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:52 Download gff for BS14122.complete
Subject Subject Range Query Range Percent Splice Strand
IM23-RA 1..354 17..370 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:35 Download gff for BS14122.complete
Subject Subject Range Query Range Percent Splice Strand
IM23-RA 28..383 14..370 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:05 Download gff for BS14122.complete
Subject Subject Range Query Range Percent Splice Strand
IM23-RA 33..384 17..368 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:52 Download gff for BS14122.complete
Subject Subject Range Query Range Percent Splice Strand
IM23-RA 28..383 14..370 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:48 Download gff for BS14122.complete
Subject Subject Range Query Range Percent Splice Strand
IM23-RA 33..384 17..368 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:48 Download gff for BS14122.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18382788..18383081 75..368 100 <- Minus
2R 18383146..18383203 17..74 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:05 Download gff for BS14122.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14270293..14270586 75..368 100 <- Minus
arm_2R 14270651..14270708 17..74 100   Minus

BS14122.pep Sequence

Translation from 16 to 369

> BS14122.pep
MKCLILSFAIFVVLASQATAGNVIIGGVCQDCSPPVAENVVVGGQSYRTG
RPGQGTVYINSPGAYLGALDGPIRRTGAGGGGGGGAQYPDGYSGRLPGGT
YLHNKDCVGCSISGGGD*

BS14122.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
IM23-PA 117 CG15066-PA 1..117 1..117 631 100 Plus