Clone Sequence Records
BS14122.5prime Sequence
384 bp (384 high quality bases) assembled on 2006-10-13
> BS14122.5prime
GAAGTTATCAGTCGACATGAAGTGCCTGATTCTGTCCTTTGCAATTTTCG
TTGTCCTGGCTTCCCAGGCTACGGCCGGAAATGTGATTATCGGCGGAGTA
TGCCAGGATTGCAGTCCGCCGGTGGCGGAAAACGTCGTAGTCGGTGGCCA
ATCCTACAGGACGGGTAGGCCGGGCCAGGGAACGGTGTATATCAATTCCC
CTGGCGCATATCTAGGAGCTCTCGATGGTCCCATTCGGCGAACTGGCGCT
GGCGGCGGAGGAGGCGGTGGCGCCCAGTATCCGGATGGTTACAGTGGTCG
TCTGCCAGGTGGCACTTACCTTCACAATAAGGATTGCGTGGGCTGCAGCA
TCAGCGGGGGCGGGGATTAAAAGCTTTCTAGACC
BS14122.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15066-PA | 354 | IM23-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IM23-RA | 468 | CG15066-RA | 33..386 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18382786..18383082 | 370..74 | 1485 | 100 | Minus |
2R | 25286936 | 2R | 18383146..18383203 | 74..17 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:22:09 has no hits.
BS14122.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:01 Download gff for
BS14122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15066-PA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:30 Download gff for
BS14122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM23-RA | 31..386 | 14..370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:23 Download gff for
BS14122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM23-RA | 31..386 | 14..370 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:23 Download gff for
BS14122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18382786..18383081 | 75..370 | 100 | <- | Minus |
2R | 18383146..18383205 | 14..74 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:30 Download gff for
BS14122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14270291..14270586 | 75..370 | 100 | <- | Minus |
arm_2R | 14270651..14270710 | 14..74 | 98 | | Minus |
BS14122.3prime Sequence
384 bp (384 high quality bases) assembled on 2006-10-13
> BS14122.3prime
ATGGTCTAGAAAGCTTTTAATCCCCGCCCCCGCTGATGCTGCAGCCCACG
CAATCCTTATTGTGAAGGTAAGTGCCACCTGGCAGACGACCACTGTAACC
ATCCGGATACTGGGCGCCACCGCCTCCTCCGCCGCCAGCGCCAGTTCGCC
GAATGGGACCATCGAGAGCTCCTAGATATGCGCCAGGGGAATTGATATAC
ACCGTTCCCTGGCCCGGCCTACCCGTCCTGTAGGATTGGCCACCGACTAC
GACGTTTTCCGCCACCGGCGGACTGCAATCCTGGCATACTCCGCCGATAA
TCACATTTCCGGCCGTAGCCTGGGAAGCCAGGACAACGAAAATTGCAAAG
GACAGAATCAGGCACTTCATGTCGACTGATAACT
BS14122.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15066-PA | 354 | IM23-RA | 1..354 | 370..17 | 1770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IM23-RA | 468 | CG15066-RA | 33..386 | 370..17 | 1770 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18382786..18383082 | 17..313 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 18383146..18383203 | 313..370 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:43:04 has no hits.
BS14122.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:00 Download gff for
BS14122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15066-PA | 1..354 | 17..370 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:41 Download gff for
BS14122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM23-RA | 31..386 | 17..373 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:22 Download gff for
BS14122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM23-RA | 31..386 | 17..373 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:22 Download gff for
BS14122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18382786..18383081 | 17..312 | 100 | <- | Plus |
2R | 18383146..18383205 | 313..373 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:41 Download gff for
BS14122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14270291..14270586 | 17..312 | 100 | <- | Plus |
arm_2R | 14270651..14270710 | 313..373 | 98 | | Plus |
BS14122.complete Sequence
386 bp assembled on 2006-11-01
GenBank Submission: FJ637605
> BS14122.complete
GAAGTTATCAGTCGACATGAAGTGCCTGATTCTGTCCTTTGCAATTTTCG
TTGTCCTGGCTTCCCAGGCTACGGCCGGAAATGTGATTATCGGCGGAGTA
TGCCAGGATTGCAGTCCGCCGGTGGCGGAAAACGTCGTAGTCGGTGGCCA
ATCCTACAGGACGGGTAGGCCGGGCCAGGGAACGGTGTATATCAATTCCC
CTGGCGCATATCTAGGAGCTCTCGATGGTCCCATTCGGCGAACTGGCGCT
GGCGGCGGAGGAGGCGGTGGCGCCCAGTATCCGGATGGTTACAGTGGTCG
TCTGCCAGGTGGCACTTACCTTCACAATAAGGATTGCGTGGGCTGCAGCA
TCAGCGGGGGCGGGGATTAAAAGCTTTCTAGACCAT
BS14122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IM23-RA | 354 | CG15066-PA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IM23-RA | 468 | CG15066-RA | 33..386 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18382786..18383082 | 370..74 | 1485 | 100 | Minus |
2R | 25286936 | 2R | 18383146..18383203 | 74..17 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:02:29 has no hits.
BS14122.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:52 Download gff for
BS14122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM23-RA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:35 Download gff for
BS14122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM23-RA | 28..383 | 14..370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:05 Download gff for
BS14122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM23-RA | 33..384 | 17..368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:52 Download gff for
BS14122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM23-RA | 28..383 | 14..370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:48 Download gff for
BS14122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM23-RA | 33..384 | 17..368 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:48 Download gff for
BS14122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18382788..18383081 | 75..368 | 100 | <- | Minus |
2R | 18383146..18383203 | 17..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:05 Download gff for
BS14122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14270293..14270586 | 75..368 | 100 | <- | Minus |
arm_2R | 14270651..14270708 | 17..74 | 100 | | Minus |
BS14122.pep Sequence
Translation from 16 to 369
> BS14122.pep
MKCLILSFAIFVVLASQATAGNVIIGGVCQDCSPPVAENVVVGGQSYRTG
RPGQGTVYINSPGAYLGALDGPIRRTGAGGGGGGGAQYPDGYSGRLPGGT
YLHNKDCVGCSISGGGD*
BS14122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IM23-PA | 117 | CG15066-PA | 1..117 | 1..117 | 631 | 100 | Plus |