Clone BS14124 Report

Search the DGRC for BS14124

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:141
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG12404-RA
Protein status:BS14124.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14124.3prime Sequence

513 bp (459 high quality bases) assembled on 2006-10-13

> BS14124.3prime
ATGGTCTAGAAAGCTTCTAGTAAATGGTAATCAACGCAAATCCTCCATAG
AGCACCGCACACGGATAGGCAATCAGCAGCTGTTGATGGTCCATGGAGAA
GGCGGTGGCGAACAGTTTCGAGGCCGATATGGCGCACCAGAATATGGAGA
TGCCGCTCACAATTAGGCCGAGTGTGCCCTGAATGGTGATTAAAATGTTG
ATGCCCGACAGCACCACCATGGGCAGCAGACAATAGCCCAGCACGGAGGC
CACTGCTCCGAAGGTAACCTGCGACCGACTGACCATCAGGGACAGCAGGC
AGTAGAAGAAGATGCAGCCCATTACGCCGATGCCGTAGATGTACGAGAAC
GTCACCTTACCGCTCAGCAGCAGGAAGCCGCCAAGTGTGAGGCAAAAGAC
CAGTGGACCCGCCATGTCAGTATCCTGGAGGATTTGCTGGTCGGTACCGC
GCAGCGGATTCAGCACGGCGAGCGTCTTTTGGAAGATGTGATTCGGATTG
ATGCCCAGCTCTT

BS14124.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-PA 795 CG12404-RA 299..795 513..17 2485 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-RA 1207 CG12404-RA 393..889 513..17 2485 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12997461..12997647 179..365 935 100 Plus
2L 23513712 2L 12994075..12994237 17..179 815 100 Plus
2L 23513712 2L 12997813..12997925 365..477 565 100 Plus
2L 23513712 2L 12999727..12999763 476..512 185 100 Plus
Blast to na_te.dros performed 2015-02-10 16:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 3181..3223 304..346 116 74.4 Plus

BS14124.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:02 Download gff for BS14124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12404-PA 299..795 17..513 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:01 Download gff for BS14124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 393..893 12..513 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:13 Download gff for BS14124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 393..893 12..513 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:13 Download gff for BS14124.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12997813..12997923 365..475 100 <- Plus
2L 12999727..12999763 476..513 97   Plus
2L 12997462..12997646 180..364 100 <- Plus
2L 12994071..12994237 12..179 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:01 Download gff for BS14124.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12994071..12994237 12..179 98 <- Plus
arm_2L 12997462..12997646 180..364 100 <- Plus
arm_2L 12997813..12997923 365..475 100 <- Plus
arm_2L 12999727..12999763 476..513 97   Plus

BS14124.5prime Sequence

570 bp (523 high quality bases) assembled on 2006-10-13

> BS14124.5prime
GAAGTTATCAGTCGACATGTCTCAGTTCGGCGGACCCAATGACTTTTACG
GCTCCGCGCCCTCGGCCGATGCCAGCTACAACTTCGATATGCCAGAATTT
GGCCAGGAACTGAATTTCCAAACCTTCGACAACACACAGGCCTCAGTGCC
GCCGAACTACGATGCGTCCTATGCCCAACCGCCGAGCCAAGGCTTGGGTG
GCTTCTACGATCCCACGGCCTACACCGACACGAGCTACGGACAGGACAAG
AGCGGAAAGTCAGCTGCTGGCGGAGGAGCCGGCAACGAATTCGATGATGA
GCCTCCACTGCTGGAAGAGCTGGGCATCAATCCGAATCACATCTTCCAAA
AGACGCTCGCCGTGCTGAATCCGCTGCGCGGTACCGACCAGCAAATCCTC
CAGGATACTGACATGGCGGGTCCACTGGTCTTTTGCCTCACACTTGGCGG
CTTCCTGCTGCTGAGCGGTAAGGTGACGTTCTCGTACATCTACGGCATCG
GCGTAATGGGCTGCATCTTCTTCTACTGCCTGCTGTCCCTGATGGTCAAT
CGGTCGCAGGTTACCTTCGG

BS14124.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-PA 795 CG12404-RA 1..554 17..570 2745 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-RA 1207 CG12404-RA 94..648 16..570 2760 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13000179..13000384 317..112 1030 100 Minus
2L 23513712 2L 12997813..12997925 463..351 565 100 Minus
2L 23513712 2L 12997540..12997647 570..463 525 99.1 Minus
2L 23513712 2L 13000446..13000542 112..16 485 100 Minus
2L 23513712 2L 12999727..12999763 352..316 185 100 Minus
Blast to na_te.dros performed 2015-02-12 11:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 3181..3223 524..482 116 74.4 Minus

BS14124.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:03 Download gff for BS14124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12404-PA 1..554 17..570 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:44 Download gff for BS14124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 88..648 10..570 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:16 Download gff for BS14124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 88..648 10..570 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:16 Download gff for BS14124.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12997540..12997646 464..570 99 <- Minus
2L 12997813..12997923 353..463 100 <- Minus
2L 12999727..12999761 318..352 100 <- Minus
2L 13000179..13000384 112..317 100 <- Minus
2L 13000447..13000548 10..111 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:44 Download gff for BS14124.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12997540..12997646 464..570 99 <- Minus
arm_2L 12997813..12997923 353..463 100 <- Minus
arm_2L 12999727..12999761 318..352 100 <- Minus
arm_2L 13000179..13000384 112..317 100 <- Minus
arm_2L 13000447..13000548 10..111 97   Minus

BS14124.complete Sequence

827 bp assembled on 2006-11-01

GenBank Submission: FJ637606

> BS14124.complete
GAAGTTATCAGTCGACATGTCTCAGTTCGGCGGACCCAATGACTTTTACG
GCTCCGCGCCCTCGGCCGATGCCAGCTACAACTTCGATATGCCAGAATTT
GGCCAGGAACTGAATTTCCAAACCTTCGACAACACACAGGCCTCAGTGCC
GCCGAACTACGATGCGTCCTATGCCCAACCGCCGAGCCAAGGCTTGGGTG
GCTTCTACGATCCCACGGCCTACACCGACACGAGCTACGGACAGGACAAG
AGCGGAAAGTCAGCTGCTGGCGGAGGAGCCGGCAACGAATTCGATGATGA
GCCTCCACTGCTGGAAGAGCTGGGCATCAATCCGAATCACATCTTCCAAA
AGACGCTCGCCGTGCTGAATCCGCTGCGCGGTACCGACCAGCAAATCCTC
CAGGATACTGACATGGCGGGTCCACTGGTCTTTTGCCTCACACTTGGCGG
CTTCCTGCTGCTGAGCGGTAAGGTGACGTTCTCGTACATCTACGGCATCG
GCGTAATGGGCTGCATCTTCTTCTACTGCCTGCTGTCCCTGATGGTCAGT
CGGTCGCAGGTTACCTTCGGAGCAGTGGCCTCCGTGCTGGGCTATTGTCT
GCTGCCCATGGTGGTGCTGTCGGGCATCAACATTTTAATCACCATTCAGG
GCACACTCGGCCTAATTGTGAGCGGCATCTCCATATTCTGGTGCGCCATA
TCGGCCTCGAAACTGTTCGCCACCGCCTTCTCCATGGACCATCAACAGCT
GCTGATTGCCTATCCGTGTGCGGTGCTCTATGGAGGATTTGCGTTGATTA
CCATTTACTAGAAGCTTTCTAGACCAT

BS14124.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-RA 795 CG12404-PA 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-RA 1207 CG12404-RA 94..889 16..811 3980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13000179..13000384 317..112 1030 100 Minus
2L 23513712 2L 12997461..12997647 649..463 935 100 Minus
2L 23513712 2L 12994075..12994237 811..649 815 100 Minus
2L 23513712 2L 12997813..12997925 463..351 565 100 Minus
2L 23513712 2L 13000446..13000542 112..16 485 100 Minus
2L 23513712 2L 12999727..12999763 352..316 185 100 Minus
Blast to na_te.dros performed 2014-11-28 01:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 3181..3223 524..482 116 74.4 Minus

BS14124.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:29 Download gff for BS14124.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:55 Download gff for BS14124.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 84..889 10..816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:42 Download gff for BS14124.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 95..889 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:29 Download gff for BS14124.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 84..889 10..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:05 Download gff for BS14124.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 95..889 17..811 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:05 Download gff for BS14124.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12994075..12994237 649..811 100 <- Minus
2L 12997462..12997646 464..648 100 <- Minus
2L 12997813..12997923 353..463 100 <- Minus
2L 12999727..12999761 318..352 100 <- Minus
2L 13000179..13000384 112..317 100 <- Minus
2L 13000447..13000541 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:42 Download gff for BS14124.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12994075..12994237 649..811 100 <- Minus
arm_2L 12997462..12997646 464..648 100 <- Minus
arm_2L 12997813..12997923 353..463 100 <- Minus
arm_2L 12999727..12999761 318..352 100 <- Minus
arm_2L 13000179..13000384 112..317 100 <- Minus
arm_2L 13000447..13000541 17..111 100   Minus

BS14124.pep Sequence

Translation from 16 to 810

> BS14124.pep
MSQFGGPNDFYGSAPSADASYNFDMPEFGQELNFQTFDNTQASVPPNYDA
SYAQPPSQGLGGFYDPTAYTDTSYGQDKSGKSAAGGGAGNEFDDEPPLLE
ELGINPNHIFQKTLAVLNPLRGTDQQILQDTDMAGPLVFCLTLGGFLLLS
GKVTFSYIYGIGVMGCIFFYCLLSLMVSRSQVTFGAVASVLGYCLLPMVV
LSGINILITIQGTLGLIVSGISIFWCAISASKLFATAFSMDHQQLLIAYP
CAVLYGGFALITIY*

BS14124.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-PA 264 CG12404-PA 1..264 1..264 1384 100 Plus