Clone Sequence Records
BS14124.3prime Sequence
513 bp (459 high quality bases) assembled on 2006-10-13
> BS14124.3prime
ATGGTCTAGAAAGCTTCTAGTAAATGGTAATCAACGCAAATCCTCCATAG
AGCACCGCACACGGATAGGCAATCAGCAGCTGTTGATGGTCCATGGAGAA
GGCGGTGGCGAACAGTTTCGAGGCCGATATGGCGCACCAGAATATGGAGA
TGCCGCTCACAATTAGGCCGAGTGTGCCCTGAATGGTGATTAAAATGTTG
ATGCCCGACAGCACCACCATGGGCAGCAGACAATAGCCCAGCACGGAGGC
CACTGCTCCGAAGGTAACCTGCGACCGACTGACCATCAGGGACAGCAGGC
AGTAGAAGAAGATGCAGCCCATTACGCCGATGCCGTAGATGTACGAGAAC
GTCACCTTACCGCTCAGCAGCAGGAAGCCGCCAAGTGTGAGGCAAAAGAC
CAGTGGACCCGCCATGTCAGTATCCTGGAGGATTTGCTGGTCGGTACCGC
GCAGCGGATTCAGCACGGCGAGCGTCTTTTGGAAGATGTGATTCGGATTG
ATGCCCAGCTCTT
BS14124.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12404-PA | 795 | CG12404-RA | 299..795 | 513..17 | 2485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12404-RA | 1207 | CG12404-RA | 393..889 | 513..17 | 2485 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12997461..12997647 | 179..365 | 935 | 100 | Plus |
2L | 23513712 | 2L | 12994075..12994237 | 17..179 | 815 | 100 | Plus |
2L | 23513712 | 2L | 12997813..12997925 | 365..477 | 565 | 100 | Plus |
2L | 23513712 | 2L | 12999727..12999763 | 476..512 | 185 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 16:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 3181..3223 | 304..346 | 116 | 74.4 | Plus |
BS14124.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:02 Download gff for
BS14124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-PA | 299..795 | 17..513 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:01 Download gff for
BS14124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 393..893 | 12..513 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:13 Download gff for
BS14124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 393..893 | 12..513 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:13 Download gff for
BS14124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12997813..12997923 | 365..475 | 100 | <- | Plus |
2L | 12999727..12999763 | 476..513 | 97 | | Plus |
2L | 12997462..12997646 | 180..364 | 100 | <- | Plus |
2L | 12994071..12994237 | 12..179 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:01 Download gff for
BS14124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12994071..12994237 | 12..179 | 98 | <- | Plus |
arm_2L | 12997462..12997646 | 180..364 | 100 | <- | Plus |
arm_2L | 12997813..12997923 | 365..475 | 100 | <- | Plus |
arm_2L | 12999727..12999763 | 476..513 | 97 | | Plus |
BS14124.5prime Sequence
570 bp (523 high quality bases) assembled on 2006-10-13
> BS14124.5prime
GAAGTTATCAGTCGACATGTCTCAGTTCGGCGGACCCAATGACTTTTACG
GCTCCGCGCCCTCGGCCGATGCCAGCTACAACTTCGATATGCCAGAATTT
GGCCAGGAACTGAATTTCCAAACCTTCGACAACACACAGGCCTCAGTGCC
GCCGAACTACGATGCGTCCTATGCCCAACCGCCGAGCCAAGGCTTGGGTG
GCTTCTACGATCCCACGGCCTACACCGACACGAGCTACGGACAGGACAAG
AGCGGAAAGTCAGCTGCTGGCGGAGGAGCCGGCAACGAATTCGATGATGA
GCCTCCACTGCTGGAAGAGCTGGGCATCAATCCGAATCACATCTTCCAAA
AGACGCTCGCCGTGCTGAATCCGCTGCGCGGTACCGACCAGCAAATCCTC
CAGGATACTGACATGGCGGGTCCACTGGTCTTTTGCCTCACACTTGGCGG
CTTCCTGCTGCTGAGCGGTAAGGTGACGTTCTCGTACATCTACGGCATCG
GCGTAATGGGCTGCATCTTCTTCTACTGCCTGCTGTCCCTGATGGTCAAT
CGGTCGCAGGTTACCTTCGG
BS14124.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12404-PA | 795 | CG12404-RA | 1..554 | 17..570 | 2745 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12404-RA | 1207 | CG12404-RA | 94..648 | 16..570 | 2760 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13000179..13000384 | 317..112 | 1030 | 100 | Minus |
2L | 23513712 | 2L | 12997813..12997925 | 463..351 | 565 | 100 | Minus |
2L | 23513712 | 2L | 12997540..12997647 | 570..463 | 525 | 99.1 | Minus |
2L | 23513712 | 2L | 13000446..13000542 | 112..16 | 485 | 100 | Minus |
2L | 23513712 | 2L | 12999727..12999763 | 352..316 | 185 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 3181..3223 | 524..482 | 116 | 74.4 | Minus |
BS14124.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:03 Download gff for
BS14124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-PA | 1..554 | 17..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:44 Download gff for
BS14124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 88..648 | 10..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:16 Download gff for
BS14124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 88..648 | 10..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:16 Download gff for
BS14124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12997540..12997646 | 464..570 | 99 | <- | Minus |
2L | 12997813..12997923 | 353..463 | 100 | <- | Minus |
2L | 12999727..12999761 | 318..352 | 100 | <- | Minus |
2L | 13000179..13000384 | 112..317 | 100 | <- | Minus |
2L | 13000447..13000548 | 10..111 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:44 Download gff for
BS14124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12997540..12997646 | 464..570 | 99 | <- | Minus |
arm_2L | 12997813..12997923 | 353..463 | 100 | <- | Minus |
arm_2L | 12999727..12999761 | 318..352 | 100 | <- | Minus |
arm_2L | 13000179..13000384 | 112..317 | 100 | <- | Minus |
arm_2L | 13000447..13000548 | 10..111 | 97 | | Minus |
BS14124.complete Sequence
827 bp assembled on 2006-11-01
GenBank Submission: FJ637606
> BS14124.complete
GAAGTTATCAGTCGACATGTCTCAGTTCGGCGGACCCAATGACTTTTACG
GCTCCGCGCCCTCGGCCGATGCCAGCTACAACTTCGATATGCCAGAATTT
GGCCAGGAACTGAATTTCCAAACCTTCGACAACACACAGGCCTCAGTGCC
GCCGAACTACGATGCGTCCTATGCCCAACCGCCGAGCCAAGGCTTGGGTG
GCTTCTACGATCCCACGGCCTACACCGACACGAGCTACGGACAGGACAAG
AGCGGAAAGTCAGCTGCTGGCGGAGGAGCCGGCAACGAATTCGATGATGA
GCCTCCACTGCTGGAAGAGCTGGGCATCAATCCGAATCACATCTTCCAAA
AGACGCTCGCCGTGCTGAATCCGCTGCGCGGTACCGACCAGCAAATCCTC
CAGGATACTGACATGGCGGGTCCACTGGTCTTTTGCCTCACACTTGGCGG
CTTCCTGCTGCTGAGCGGTAAGGTGACGTTCTCGTACATCTACGGCATCG
GCGTAATGGGCTGCATCTTCTTCTACTGCCTGCTGTCCCTGATGGTCAGT
CGGTCGCAGGTTACCTTCGGAGCAGTGGCCTCCGTGCTGGGCTATTGTCT
GCTGCCCATGGTGGTGCTGTCGGGCATCAACATTTTAATCACCATTCAGG
GCACACTCGGCCTAATTGTGAGCGGCATCTCCATATTCTGGTGCGCCATA
TCGGCCTCGAAACTGTTCGCCACCGCCTTCTCCATGGACCATCAACAGCT
GCTGATTGCCTATCCGTGTGCGGTGCTCTATGGAGGATTTGCGTTGATTA
CCATTTACTAGAAGCTTTCTAGACCAT
BS14124.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12404-RA | 795 | CG12404-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12404-RA | 1207 | CG12404-RA | 94..889 | 16..811 | 3980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13000179..13000384 | 317..112 | 1030 | 100 | Minus |
2L | 23513712 | 2L | 12997461..12997647 | 649..463 | 935 | 100 | Minus |
2L | 23513712 | 2L | 12994075..12994237 | 811..649 | 815 | 100 | Minus |
2L | 23513712 | 2L | 12997813..12997925 | 463..351 | 565 | 100 | Minus |
2L | 23513712 | 2L | 13000446..13000542 | 112..16 | 485 | 100 | Minus |
2L | 23513712 | 2L | 12999727..12999763 | 352..316 | 185 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 3181..3223 | 524..482 | 116 | 74.4 | Minus |
BS14124.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:29 Download gff for
BS14124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:55 Download gff for
BS14124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 84..889 | 10..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:42 Download gff for
BS14124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 95..889 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:29 Download gff for
BS14124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 84..889 | 10..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:05 Download gff for
BS14124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 95..889 | 17..811 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:05 Download gff for
BS14124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12994075..12994237 | 649..811 | 100 | <- | Minus |
2L | 12997462..12997646 | 464..648 | 100 | <- | Minus |
2L | 12997813..12997923 | 353..463 | 100 | <- | Minus |
2L | 12999727..12999761 | 318..352 | 100 | <- | Minus |
2L | 13000179..13000384 | 112..317 | 100 | <- | Minus |
2L | 13000447..13000541 | 17..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:42 Download gff for
BS14124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12994075..12994237 | 649..811 | 100 | <- | Minus |
arm_2L | 12997462..12997646 | 464..648 | 100 | <- | Minus |
arm_2L | 12997813..12997923 | 353..463 | 100 | <- | Minus |
arm_2L | 12999727..12999761 | 318..352 | 100 | <- | Minus |
arm_2L | 13000179..13000384 | 112..317 | 100 | <- | Minus |
arm_2L | 13000447..13000541 | 17..111 | 100 | | Minus |
BS14124.pep Sequence
Translation from 16 to 810
> BS14124.pep
MSQFGGPNDFYGSAPSADASYNFDMPEFGQELNFQTFDNTQASVPPNYDA
SYAQPPSQGLGGFYDPTAYTDTSYGQDKSGKSAAGGGAGNEFDDEPPLLE
ELGINPNHIFQKTLAVLNPLRGTDQQILQDTDMAGPLVFCLTLGGFLLLS
GKVTFSYIYGIGVMGCIFFYCLLSLMVSRSQVTFGAVASVLGYCLLPMVV
LSGINILITIQGTLGLIVSGISIFWCAISASKLFATAFSMDHQQLLIAYP
CAVLYGGFALITIY*
BS14124.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12404-PA | 264 | CG12404-PA | 1..264 | 1..264 | 1384 | 100 | Plus |