Clone Sequence Records
BS14132.complete Sequence
695 bp assembled on 2010-02-09
GenBank Submission: KX801707
> BS14132.complete
GAAGTTATCAGTCGACATGCGTTTGGGACAGACCGTACCTAACTTCGAGG
CCGACACAACCAAGGGGCCCATTAAATTCCACGAGTGGCAGGGCAACTCC
TGGGTGGTGCTCTTCTCTCACCCCGCCGACTTTACTCCCGTCTGCACCAC
TGAGCTGGGCAGGATTGCGGTGCACCAGCCGGAGTTTGCCAAGCGGAACA
CCAAGTGCCTGGCACATTCCGTTGACGCATTGAACTCGCACGTGGACTGG
GTGAACGACATCAAGAGCTATTGCCTGGACATTCCCGGGGACTTCCCCTA
CCCGATCATCGCCGACCCTACTCGCGACCTGGCCGTCAGCCTGGGCATGC
TCGACGAGGAGCAGAAGAAGGATCCCGAGGTGGGCAAGACCATCCGCGCC
CTGTTCATCATCAGTCCGGACCATAAGGTGCGCCTCTCCATGTTCTACCC
CATGTCCACTGGTCGCAACGTTGACGAGATTCTGAGGACCATTGACTCCC
TCCAGCTGACTGATCGCCTCAAGGTGGTGGCCACTCCCGCCAACTGGACC
CCTGGCACTAAGGTCATGATCCTGCCCACTGTCACCGATGAAGAGGCTCA
TAAACTCTTCCCCAAGGGATTTGATAAGGTATCCATGCCGTCTGGAGTAA
ACTACGTCCGCACCACTGACAACTACTGAAAGCTTTCTAGACCAT
BS14132.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:23:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prx2540-2-RA | 663 | CG11765-PA | 1..663 | 17..679 | 3315 | 100 | Plus |
Prx2540-1-RA | 663 | CG12405-PA | 1..659 | 17..675 | 3160 | 98.6 | Plus |
CG12896-RA | 663 | CG12896-PA | 1..659 | 17..675 | 3115 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prx2540-2-RA | 856 | CG11765-RA | 88..750 | 17..679 | 3315 | 100 | Plus |
Prx2540-1-RA | 848 | CG12405-RA | 97..755 | 17..675 | 3160 | 98.6 | Plus |
CG12896-RA | 848 | CG12896-RA | 97..755 | 17..675 | 3115 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:23:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10418950..10419324 | 100..474 | 1875 | 100 | Plus |
2R | 25286936 | 2R | 10424677..10425051 | 100..474 | 1800 | 98.7 | Plus |
2R | 25286936 | 2R | 10427300..10427674 | 474..100 | 1800 | 98.7 | Minus |
2R | 25286936 | 2R | 10419527..10419655 | 551..679 | 645 | 100 | Plus |
2R | 25286936 | 2R | 10425254..10425378 | 551..675 | 580 | 97.6 | Plus |
2R | 25286936 | 2R | 10426973..10427097 | 675..551 | 535 | 95.2 | Minus |
2R | 25286936 | 2R | 10418805..10418887 | 17..99 | 415 | 100 | Plus |
2R | 25286936 | 2R | 10424532..10424614 | 17..99 | 415 | 100 | Plus |
2R | 25286936 | 2R | 10427737..10427819 | 99..17 | 415 | 100 | Minus |
2R | 25286936 | 2R | 10419388..10419463 | 475..550 | 380 | 100 | Plus |
2R | 25286936 | 2R | 10425115..10425190 | 475..550 | 365 | 98.7 | Plus |
2R | 25286936 | 2R | 10427161..10427236 | 550..475 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:23:25 has no hits.
BS14132.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:08 Download gff for
BS14132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx2540-2-RA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:45 Download gff for
BS14132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx2540-2-RA | 88..749 | 17..678 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:17 Download gff for
BS14132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx2540-2-RA | 88..749 | 17..678 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:49 Download gff for
BS14132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx2540-2-RA | 88..749 | 17..678 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:27 Download gff for
BS14132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx2540-2-RA | 88..749 | 17..678 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:27 Download gff for
BS14132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10419527..10419654 | 551..678 | 100 | | Plus |
2R | 10418805..10418887 | 17..99 | 100 | -> | Plus |
2R | 10418950..10419324 | 100..474 | 100 | -> | Plus |
2R | 10419388..10419463 | 475..550 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:17 Download gff for
BS14132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6306310..6306392 | 17..99 | 100 | -> | Plus |
arm_2R | 6306455..6306829 | 100..474 | 100 | -> | Plus |
arm_2R | 6306893..6306968 | 475..550 | 100 | -> | Plus |
arm_2R | 6307032..6307159 | 551..678 | 100 | | Plus |
BS14132.3prime Sequence
657 bp (550 high quality bases) assembled on 2006-10-13
> BS14132.3prime
ATGGTCTAGAAAGCTTTCAGTAGTTGTCAGTGGTGCGGACGTAGTTTACT
CCAGACGGCATGGATACCTTATCAAATCCCTTGGGGAAGAGTTTATGAGC
CTCTTCATCGGTGACAGTGGGCAGGATCATGACCTTAGTGCCAGGGGTCC
AGTTGGCGGGAGTGGCCACCACCTTGAGGCGATCAGTCAGCTGGAGGGAG
TCAATGGTCCTCAGAATCTCGTCAACGTTGCGACCAGTGGACATGGGGTA
GAACATGGAGAGGCGCACCTTATGGTCCGGACTGATGATGAACAGGGCGC
GGATGGTCTTGCCCACCTCGGGATCCTTCTTCTGCTCCTCGTCGAGCATG
CCCAGGCTGACGGCCAGGTCGCGAGTAGGGTCGGCGATGATCGGGTAGGG
GAAGTCCCCGGGAATGTCCAGGCAATAGCTCTTGATGTCGTTCACCCAGT
CCACGTGCGAGTTCAATGCGTCAACGGAATGTGCCAGGCACTTGGTGTTC
CGCTTGGCAAACTCCGGCTGGTGCACCGCAATCCTGCCCAGCTCAGTGGT
GCAAACGGGAGTAAAGTCGGCGGGGTGAGAGAAGAGCACCACCCAGGAGT
TGCCTTGCCACTCGTGGAATTTAATGGGCCCCTTGGTTGTGTCGGCCTCG
AAGTTAG
BS14132.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11765-PA | 663 | Prx2540-2-RA | 23..663 | 657..17 | 3155 | 99.6 | Minus |
CG12405-PA | 663 | Prx2540-1-RA | 23..659 | 657..21 | 2910 | 98.2 | Minus |
CG12896-PA | 663 | CG12896-RA | 23..659 | 657..21 | 2835 | 97.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prx2540-2-RA | 856 | CG11765-RA | 110..750 | 657..17 | 3175 | 99.7 | Minus |
Prx2540-1-RA | 848 | CG12405-RA | 119..755 | 657..21 | 3020 | 98.3 | Minus |
CG12896-RA | 848 | CG12896-RA | 119..755 | 657..21 | 2975 | 97.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10418950..10419324 | 596..222 | 1860 | 99.7 | Minus |
2R | 25286936 | 2R | 10424677..10425051 | 596..222 | 1785 | 98.4 | Minus |
2R | 25286936 | 2R | 10427300..10427674 | 222..596 | 1785 | 98.4 | Plus |
2R | 25286936 | 2R | 10419527..10419655 | 145..17 | 645 | 100 | Minus |
2R | 25286936 | 2R | 10425254..10425378 | 145..21 | 580 | 97.6 | Minus |
2R | 25286936 | 2R | 10426973..10427097 | 21..145 | 535 | 95.2 | Plus |
2R | 25286936 | 2R | 10419388..10419463 | 221..146 | 380 | 100 | Minus |
2R | 25286936 | 2R | 10425115..10425190 | 221..146 | 365 | 98.7 | Minus |
2R | 25286936 | 2R | 10427161..10427236 | 146..221 | 365 | 98.7 | Plus |
2R | 25286936 | 2R | 10418827..10418887 | 657..597 | 290 | 98.4 | Minus |
2R | 25286936 | 2R | 10424554..10424614 | 657..597 | 290 | 98.4 | Minus |
2R | 25286936 | 2R | 10427737..10427797 | 597..657 | 290 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:38:47 has no hits.
BS14132.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:09 Download gff for
BS14132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11765-PA | 23..663 | 17..657 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:17:00 Download gff for
BS14132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx2540-2-RA | 110..750 | 17..657 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:26:00 Download gff for
BS14132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx2540-2-RA | 110..750 | 17..657 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:26:00 Download gff for
BS14132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10418827..10418887 | 597..657 | 98 | -> | Minus |
2R | 10418950..10419324 | 222..596 | 99 | -> | Minus |
2R | 10419388..10419463 | 146..221 | 100 | -> | Minus |
2R | 10419527..10419655 | 17..145 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:17:00 Download gff for
BS14132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6306455..6306829 | 222..596 | 99 | -> | Minus |
arm_2R | 6306893..6306968 | 146..221 | 100 | -> | Minus |
arm_2R | 6307032..6307160 | 17..145 | 100 | | Minus |
arm_2R | 6306332..6306392 | 597..657 | 98 | -> | Minus |
BS14132.5prime Sequence
693 bp (645 high quality bases) assembled on 2006-10-13
> BS14132.5prime
GAAGTTATCAGTCGACATGCGTTTGGGACAGACCGTACCTAACTTCGAGG
CCGACACAACCAAGGGGCCCATTAAATTCCACGAGTGGCAGGGCAACTCC
TGGGTGGTGCTCTTCTCTCACCCCGCCGACTTTACTCCCGTCTGCACCAC
TGAGCTGGGCAGGATTGCGGTGCACCAGCCGGAGTTTGCCAAGCGGAACA
CCAAGTGCCTGGCACATTCCGTTGACGCATTGAACTCGCACGTGGACTGG
GTGAACGACATCAAGAGCTATTGCCTGGACATTCCCGGGGACTTCCCCTA
CCCGATCATCGCCGACCCTACTCGCGACCTGGCCGTCAGCCTGGGCATGC
TCGACGAGGAGCAGAAGAAGGATCCCGAGGTGGGCAAGACCATCCGCGCC
CTGTTCATCATCAGTCCGGACCATAAGGTGCGCCTCTCCATGTTCTACCC
CATGTCCACTGGTCGCAACGTTGACGAGATTCTGAGGACCATTGACTCCC
TCCAGCTGACTGATCGCCTCAAGGTGGTGGCCACTCCCGCCAACTGGACC
CCTGGCACTAAGGTCATGATCCTGCCCACTGTCACCGATGAAGAGGCTCA
TAAACTCTTCCCCAAGGGATTTGATAAGGTATCCATGCCGTCTGGAGTAA
ACTACGTCCGCACCACTGACAACTACTGAAAGCTTTCTAGACC
BS14132.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11765-PA | 663 | Prx2540-2-RA | 1..663 | 17..679 | 3315 | 100 | Plus |
CG12405-PA | 663 | Prx2540-1-RA | 1..659 | 17..675 | 3070 | 98.6 | Plus |
CG12896-PA | 663 | CG12896-RA | 1..659 | 17..675 | 2995 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prx2540-2-RA | 856 | CG11765-RA | 88..750 | 17..679 | 3315 | 100 | Plus |
Prx2540-1-RA | 848 | CG12405-RA | 97..755 | 17..675 | 3160 | 98.6 | Plus |
CG12896-RA | 848 | CG12896-RA | 97..755 | 17..675 | 3115 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10418950..10419324 | 100..474 | 1875 | 100 | Plus |
2R | 25286936 | 2R | 10424677..10425051 | 100..474 | 1800 | 98.7 | Plus |
2R | 25286936 | 2R | 10427300..10427674 | 474..100 | 1800 | 98.7 | Minus |
2R | 25286936 | 2R | 10419527..10419655 | 551..679 | 645 | 100 | Plus |
2R | 25286936 | 2R | 10425254..10425378 | 551..675 | 580 | 97.6 | Plus |
2R | 25286936 | 2R | 10426973..10427097 | 675..551 | 535 | 95.2 | Minus |
2R | 25286936 | 2R | 10418805..10418887 | 17..99 | 415 | 100 | Plus |
2R | 25286936 | 2R | 10424532..10424614 | 17..99 | 415 | 100 | Plus |
2R | 25286936 | 2R | 10427737..10427819 | 99..17 | 415 | 100 | Minus |
2R | 25286936 | 2R | 10419388..10419463 | 475..550 | 380 | 100 | Plus |
2R | 25286936 | 2R | 10425115..10425190 | 475..550 | 365 | 98.7 | Plus |
2R | 25286936 | 2R | 10427161..10427236 | 550..475 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:26:55 has no hits.
BS14132.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:09 Download gff for
BS14132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11765-PA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:51:43 Download gff for
BS14132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx2540-2-RA | 81..750 | 9..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:00:18 Download gff for
BS14132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx2540-2-RA | 81..750 | 9..679 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:00:18 Download gff for
BS14132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10418798..10418887 | 9..99 | 96 | -> | Plus |
2R | 10418950..10419324 | 100..474 | 100 | -> | Plus |
2R | 10419388..10419463 | 475..550 | 100 | -> | Plus |
2R | 10419527..10419655 | 551..679 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:51:43 Download gff for
BS14132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6306303..6306392 | 9..99 | 96 | -> | Plus |
arm_2R | 6306455..6306829 | 100..474 | 100 | -> | Plus |
arm_2R | 6306893..6306968 | 475..550 | 100 | -> | Plus |
arm_2R | 6307032..6307160 | 551..679 | 100 | | Plus |
BS14132.pep Sequence
Translation from 16 to 678
> BS14132.pep
MRLGQTVPNFEADTTKGPIKFHEWQGNSWVVLFSHPADFTPVCTTELGRI
AVHQPEFAKRNTKCLAHSVDALNSHVDWVNDIKSYCLDIPGDFPYPIIAD
PTRDLAVSLGMLDEEQKKDPEVGKTIRALFIISPDHKVRLSMFYPMSTGR
NVDEILRTIDSLQLTDRLKVVATPANWTPGTKVMILPTVTDEEAHKLFPK
GFDKVSMPSGVNYVRTTDNY*
BS14132.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prx2540-2-PA | 220 | CG11765-PA | 1..220 | 1..220 | 1177 | 100 | Plus |
Prx2540-1-PA | 220 | CG12405-PA | 1..220 | 1..220 | 1170 | 99.1 | Plus |
CG12896-PA | 220 | CG12896-PA | 1..220 | 1..220 | 1163 | 98.2 | Plus |
Prx6005-PA | 222 | CG3083-PA | 6..219 | 1..217 | 571 | 51.2 | Plus |
Jafrac1-PE | 194 | CG1633-PE | 24..188 | 19..192 | 231 | 34.9 | Plus |