Clone BS14133 Report

Search the DGRC for BS14133

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:141
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG7967-RA
Protein status:BS14133.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14133.3prime Sequence

620 bp (537 high quality bases) assembled on 2006-10-13

> BS14133.3prime
ATGGTCTAGAAAGCTTCTACTCGGACCCGGTGCTCAGCAGCTTCAGGGCC
TTCTGCAGGTTCTCGATGGCTGTCTTGACGTCGTCGTAGTTGAGGGCACT
GCCGGCGTACTTGCAATACTTCTGGGCGGTAATCATTTGGTCGGGAGTGA
TTTGCACCCCGGCCACGGGCACAATGGGCTGGTAAATGGTGGCCGCCGTG
GCCGGATTAGGCTGAGCTGTGGGCACGTAGGGCACAAAGCCGCCCGGCTT
CTCCTCGTCCACCGGTGGACTGGGCAATTTGTTCGGGTTGTTCAGCACCT
CCTCGGCGGTGGGAGGGACCACTCCGGAAGTTGTCGGTGATGATGGAGCT
GGTGGCTGTGAGTCAGGCTCCGGCTGGTAGGGCGCTGGAGCAGCTGCTCC
CGCGGCGTCCTCCGGCGATGTGTCTGCCGAGGCGTTGGCATTCTCCCCCT
CGAGCTCCGCCTCATCGTCGTCGTCTGGCAAGGGGCCGGGAATCGGTGTC
TCACCGTTCTTCAGGCAATTGTGGATGTAGGCGGCCTTCCACTTGGCGTA
CTTCCTGTTGTGCAGCGCCTCTTCGCTCAGTTCACCGAAGGTCTGGAGAA
TGTCGTAAAGCACACCACTG

BS14133.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7967-PA 951 CG7967-RA 348..951 620..17 2995 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7967-RA 1257 CG7967-RA 449..1052 620..17 3005 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1651637..1652240 17..620 3005 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 11:20:26 has no hits.

BS14133.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:09 Download gff for BS14133.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7967-PA 348..951 17..620 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:47 Download gff for BS14133.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7967-RA 449..1055 13..620 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:30 Download gff for BS14133.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7967-RA 449..1055 13..620 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:30 Download gff for BS14133.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1651634..1652240 13..620 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:47 Download gff for BS14133.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1651634..1652240 13..620 99   Plus

BS14133.5prime Sequence

683 bp (569 high quality bases) assembled on 2006-10-13

> BS14133.5prime
GAAGTTATCAGTCGACATGGAGTTTCCGCCTTGTCCTCCCTCGCTGAAGT
CCATCCAACACTTTCTGAAGCTGGCCCAGGAACATGATACCCGGGATGTG
GTCATCGCCTACTGGGCGAGACTCTATGCTCTCCAGGTGGGCCTCAAAGC
CTCCACCCAAACGGGTGAAGAAACCAAACTGCTGCTGGGCATCATGGACT
GGCTGGAGCAGATGAAGAAACAGTATGCTGAGAACGAGGCCATCACCAAC
GAGGTGGCTGCCCAGGCACACATCGAGAACTACGCCTTGAAACTATTCCT
GTACGCCGACAAACAGGATCGCGAGGAGAACTTCGGAAAAAACGTCGTTA
AGGCCTTCTACTCCAGTGGTGTGCTCTACGACATTCTCCAGACCTTCGGT
GAACTGAGCGAAGAGGCGCTGCACAACAGGAAGTACGCCAAGTGGAAGGC
CGCCTACATCCACAATTGCCTGAAGAACGGTGAGACACCGATTCCCGGCC
CCTTGCCAGACGACGACGATGAGGCGGAGCTCGAGGGGGAGAATGCCAAC
GCCTCGGCAGACACATCGCCGGAGGACGCCGCGGGAGCAGCTGCTCCAGC
GCCCTACCAGCCGGGAGCTGACTCACAGCCACCAGCTCCATCATCACCGA
AAACTTTCCGGAGTGGTCCCTCCCACCGCCGAG

BS14133.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7967-PA 951 CG7967-RA 1..598 17..614 2990 100 Plus
CG7967-PA 951 CG7967-RA 602..640 618..656 170 97.4 Plus
CG7967-PA 951 CG7967-RA 639..666 656..683 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7967-RA 1257 CG7967-RA 102..767 17..683 3250 99.4 Plus
CG7970-RC 1270 CG7970-RC 1..50 66..17 250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1651922..1652264 683..340 1610 98.5 Minus
3L 28110227 3L 1652332..1652483 339..188 760 100 Minus
3L 28110227 3L 1652690..1652799 126..17 550 100 Minus
3L 28110227 3L 1652566..1652628 189..127 315 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:13:29 has no hits.

BS14133.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:10 Download gff for BS14133.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7967-PA 1..666 17..683 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:03 Download gff for BS14133.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7967-RA 95..767 9..683 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:27:31 Download gff for BS14133.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7967-RA 95..767 9..683 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:27:31 Download gff for BS14133.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1651922..1652264 340..683 98 <- Minus
3L 1652332..1652482 189..339 100 <- Minus
3L 1652567..1652628 127..188 100 <- Minus
3L 1652690..1652803 9..126 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:03 Download gff for BS14133.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1651922..1652264 340..683 98 <- Minus
arm_3L 1652332..1652482 189..339 100 <- Minus
arm_3L 1652567..1652628 127..188 100 <- Minus
arm_3L 1652690..1652803 9..126 96   Minus

BS14133.complete Sequence

983 bp assembled on 2006-11-01

GenBank Submission: FJ637607

> BS14133.complete
GAAGTTATCAGTCGACATGGAGTTTCCGCCTTGTCCTCCCTCGCTGAAGT
CCATCCAACACTTTCTGAAGCTGGCCCAGGAACATGATACCCGGGATGTG
GTCATCGCCTACTGGGCGAGACTCTATGCTCTCCAGGTGGGCCTCAAAGC
CTCCACCCAAACGGGTGAAGAAACCAAACTGCTGCTGGGCATCATGGACT
GGCTGGAGCAGATGAAGAAACAGTATGCTGAGAACGAGGCCATCACCAAC
GAGGTGGCTGCCCAGGCACACATCGAGAACTACGCCTTGAAACTATTCCT
GTACGCCGACAAACAGGATCGCGAGGAGAACTTCGGAAAAAACGTCGTTA
AGGCCTTCTACTCCAGTGGTGTGCTCTACGACATTCTCCAGACCTTCGGT
GAACTGAGCGAAGAGGCGCTGCACAACAGGAAGTACGCCAAGTGGAAGGC
CGCCTACATCCACAATTGCCTGAAGAACGGTGAGACACCGATTCCCGGCC
CCTTGCCAGACGACGACGATGAGGCGGAGCTCGAGGGGGAGAATGCCAAC
GCCTCGGCAGACACATCGCCGGAGGACGCCGCGGGAGCAGCTGCTCCAGC
GCCCTACCAGCCGGAGCCTGACTCACAGCCACCAGCTCCATCATCACCGA
CAACTTCCGGAGTGGTCCCTCCCACCGCCGAGGAGGTGCTGAACAACCCG
AACAAATTGCCCAGTCCACCGGTGGACGAGGAGAAGCCGGGCGGCTTTGT
GCCCTACGTGCCCACAGCTCAGCCTAATCCGGCCACGGCGGCCACCATTT
ACCAGCCCATTGTGCCCGTGGCCGGGGTGCAAATCACTCCCGACCAAATG
ATTACCGCCCAGAAGTATTGCAAGTACGCCGGCAGTGCCCTCAACTACGA
CGACGTCAAGACAGCCATCGAGAACCTGCAGAAGGCCCTGAAGCTGCTGA
GCACCGGGTCCGAGTAGAAGCTTTCTAGACCAT

BS14133.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7967-RA 951 CG7967-PA 1..951 17..967 4755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7967-RA 1257 CG7967-RA 102..1052 17..967 4755 100 Plus
CG7970-RC 1270 CG7970-RC 1..50 66..17 250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1651637..1652264 967..340 3140 100 Minus
3L 28110227 3L 1652332..1652483 339..188 760 100 Minus
3L 28110227 3L 1652690..1652799 126..17 550 100 Minus
3L 28110227 3L 1652566..1652628 189..127 315 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:53:41 has no hits.

BS14133.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:53 Download gff for BS14133.complete
Subject Subject Range Query Range Percent Splice Strand
CG7967-RA 1..951 17..967 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:10 Download gff for BS14133.complete
Subject Subject Range Query Range Percent Splice Strand
CG7967-RA 113..1073 9..971 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:20 Download gff for BS14133.complete
Subject Subject Range Query Range Percent Splice Strand
CG7967-RA 102..1052 17..967 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:53 Download gff for BS14133.complete
Subject Subject Range Query Range Percent Splice Strand
CG7967-RA 113..1073 9..971 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:38 Download gff for BS14133.complete
Subject Subject Range Query Range Percent Splice Strand
CG7967-RA 102..1052 17..967 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:38 Download gff for BS14133.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1651637..1652264 340..967 100 <- Minus
3L 1652332..1652482 189..339 100 <- Minus
3L 1652567..1652628 127..188 100 <- Minus
3L 1652690..1652799 17..126 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:20 Download gff for BS14133.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1651637..1652264 340..967 100 <- Minus
arm_3L 1652332..1652482 189..339 100 <- Minus
arm_3L 1652567..1652628 127..188 100 <- Minus
arm_3L 1652690..1652799 17..126 100   Minus

BS14133.pep Sequence

Translation from 16 to 966

> BS14133.pep
MEFPPCPPSLKSIQHFLKLAQEHDTRDVVIAYWARLYALQVGLKASTQTG
EETKLLLGIMDWLEQMKKQYAENEAITNEVAAQAHIENYALKLFLYADKQ
DREENFGKNVVKAFYSSGVLYDILQTFGELSEEALHNRKYAKWKAAYIHN
CLKNGETPIPGPLPDDDDEAELEGENANASADTSPEDAAGAAAPAPYQPE
PDSQPPAPSSPTTSGVVPPTAEEVLNNPNKLPSPPVDEEKPGGFVPYVPT
AQPNPATAATIYQPIVPVAGVQITPDQMITAQKYCKYAGSALNYDDVKTA
IENLQKALKLLSTGSE*

BS14133.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7967-PA 316 CG7967-PA 1..316 1..316 1661 100 Plus