Clone Sequence Records
BS14133.3prime Sequence
620 bp (537 high quality bases) assembled on 2006-10-13
> BS14133.3prime
ATGGTCTAGAAAGCTTCTACTCGGACCCGGTGCTCAGCAGCTTCAGGGCC
TTCTGCAGGTTCTCGATGGCTGTCTTGACGTCGTCGTAGTTGAGGGCACT
GCCGGCGTACTTGCAATACTTCTGGGCGGTAATCATTTGGTCGGGAGTGA
TTTGCACCCCGGCCACGGGCACAATGGGCTGGTAAATGGTGGCCGCCGTG
GCCGGATTAGGCTGAGCTGTGGGCACGTAGGGCACAAAGCCGCCCGGCTT
CTCCTCGTCCACCGGTGGACTGGGCAATTTGTTCGGGTTGTTCAGCACCT
CCTCGGCGGTGGGAGGGACCACTCCGGAAGTTGTCGGTGATGATGGAGCT
GGTGGCTGTGAGTCAGGCTCCGGCTGGTAGGGCGCTGGAGCAGCTGCTCC
CGCGGCGTCCTCCGGCGATGTGTCTGCCGAGGCGTTGGCATTCTCCCCCT
CGAGCTCCGCCTCATCGTCGTCGTCTGGCAAGGGGCCGGGAATCGGTGTC
TCACCGTTCTTCAGGCAATTGTGGATGTAGGCGGCCTTCCACTTGGCGTA
CTTCCTGTTGTGCAGCGCCTCTTCGCTCAGTTCACCGAAGGTCTGGAGAA
TGTCGTAAAGCACACCACTG
BS14133.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7967-PA | 951 | CG7967-RA | 348..951 | 620..17 | 2995 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7967-RA | 1257 | CG7967-RA | 449..1052 | 620..17 | 3005 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1651637..1652240 | 17..620 | 3005 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:20:26 has no hits.
BS14133.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:09 Download gff for
BS14133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-PA | 348..951 | 17..620 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:47 Download gff for
BS14133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-RA | 449..1055 | 13..620 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:30 Download gff for
BS14133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-RA | 449..1055 | 13..620 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:30 Download gff for
BS14133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1651634..1652240 | 13..620 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:47 Download gff for
BS14133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1651634..1652240 | 13..620 | 99 | | Plus |
BS14133.5prime Sequence
683 bp (569 high quality bases) assembled on 2006-10-13
> BS14133.5prime
GAAGTTATCAGTCGACATGGAGTTTCCGCCTTGTCCTCCCTCGCTGAAGT
CCATCCAACACTTTCTGAAGCTGGCCCAGGAACATGATACCCGGGATGTG
GTCATCGCCTACTGGGCGAGACTCTATGCTCTCCAGGTGGGCCTCAAAGC
CTCCACCCAAACGGGTGAAGAAACCAAACTGCTGCTGGGCATCATGGACT
GGCTGGAGCAGATGAAGAAACAGTATGCTGAGAACGAGGCCATCACCAAC
GAGGTGGCTGCCCAGGCACACATCGAGAACTACGCCTTGAAACTATTCCT
GTACGCCGACAAACAGGATCGCGAGGAGAACTTCGGAAAAAACGTCGTTA
AGGCCTTCTACTCCAGTGGTGTGCTCTACGACATTCTCCAGACCTTCGGT
GAACTGAGCGAAGAGGCGCTGCACAACAGGAAGTACGCCAAGTGGAAGGC
CGCCTACATCCACAATTGCCTGAAGAACGGTGAGACACCGATTCCCGGCC
CCTTGCCAGACGACGACGATGAGGCGGAGCTCGAGGGGGAGAATGCCAAC
GCCTCGGCAGACACATCGCCGGAGGACGCCGCGGGAGCAGCTGCTCCAGC
GCCCTACCAGCCGGGAGCTGACTCACAGCCACCAGCTCCATCATCACCGA
AAACTTTCCGGAGTGGTCCCTCCCACCGCCGAG
BS14133.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7967-PA | 951 | CG7967-RA | 1..598 | 17..614 | 2990 | 100 | Plus |
CG7967-PA | 951 | CG7967-RA | 602..640 | 618..656 | 170 | 97.4 | Plus |
CG7967-PA | 951 | CG7967-RA | 639..666 | 656..683 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7967-RA | 1257 | CG7967-RA | 102..767 | 17..683 | 3250 | 99.4 | Plus |
CG7970-RC | 1270 | CG7970-RC | 1..50 | 66..17 | 250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1651922..1652264 | 683..340 | 1610 | 98.5 | Minus |
3L | 28110227 | 3L | 1652332..1652483 | 339..188 | 760 | 100 | Minus |
3L | 28110227 | 3L | 1652690..1652799 | 126..17 | 550 | 100 | Minus |
3L | 28110227 | 3L | 1652566..1652628 | 189..127 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:13:29 has no hits.
BS14133.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:10 Download gff for
BS14133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-PA | 1..666 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:03 Download gff for
BS14133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-RA | 95..767 | 9..683 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:27:31 Download gff for
BS14133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-RA | 95..767 | 9..683 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:27:31 Download gff for
BS14133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1651922..1652264 | 340..683 | 98 | <- | Minus |
3L | 1652332..1652482 | 189..339 | 100 | <- | Minus |
3L | 1652567..1652628 | 127..188 | 100 | <- | Minus |
3L | 1652690..1652803 | 9..126 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:03 Download gff for
BS14133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1651922..1652264 | 340..683 | 98 | <- | Minus |
arm_3L | 1652332..1652482 | 189..339 | 100 | <- | Minus |
arm_3L | 1652567..1652628 | 127..188 | 100 | <- | Minus |
arm_3L | 1652690..1652803 | 9..126 | 96 | | Minus |
BS14133.complete Sequence
983 bp assembled on 2006-11-01
GenBank Submission: FJ637607
> BS14133.complete
GAAGTTATCAGTCGACATGGAGTTTCCGCCTTGTCCTCCCTCGCTGAAGT
CCATCCAACACTTTCTGAAGCTGGCCCAGGAACATGATACCCGGGATGTG
GTCATCGCCTACTGGGCGAGACTCTATGCTCTCCAGGTGGGCCTCAAAGC
CTCCACCCAAACGGGTGAAGAAACCAAACTGCTGCTGGGCATCATGGACT
GGCTGGAGCAGATGAAGAAACAGTATGCTGAGAACGAGGCCATCACCAAC
GAGGTGGCTGCCCAGGCACACATCGAGAACTACGCCTTGAAACTATTCCT
GTACGCCGACAAACAGGATCGCGAGGAGAACTTCGGAAAAAACGTCGTTA
AGGCCTTCTACTCCAGTGGTGTGCTCTACGACATTCTCCAGACCTTCGGT
GAACTGAGCGAAGAGGCGCTGCACAACAGGAAGTACGCCAAGTGGAAGGC
CGCCTACATCCACAATTGCCTGAAGAACGGTGAGACACCGATTCCCGGCC
CCTTGCCAGACGACGACGATGAGGCGGAGCTCGAGGGGGAGAATGCCAAC
GCCTCGGCAGACACATCGCCGGAGGACGCCGCGGGAGCAGCTGCTCCAGC
GCCCTACCAGCCGGAGCCTGACTCACAGCCACCAGCTCCATCATCACCGA
CAACTTCCGGAGTGGTCCCTCCCACCGCCGAGGAGGTGCTGAACAACCCG
AACAAATTGCCCAGTCCACCGGTGGACGAGGAGAAGCCGGGCGGCTTTGT
GCCCTACGTGCCCACAGCTCAGCCTAATCCGGCCACGGCGGCCACCATTT
ACCAGCCCATTGTGCCCGTGGCCGGGGTGCAAATCACTCCCGACCAAATG
ATTACCGCCCAGAAGTATTGCAAGTACGCCGGCAGTGCCCTCAACTACGA
CGACGTCAAGACAGCCATCGAGAACCTGCAGAAGGCCCTGAAGCTGCTGA
GCACCGGGTCCGAGTAGAAGCTTTCTAGACCAT
BS14133.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7967-RA | 951 | CG7967-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7967-RA | 1257 | CG7967-RA | 102..1052 | 17..967 | 4755 | 100 | Plus |
CG7970-RC | 1270 | CG7970-RC | 1..50 | 66..17 | 250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1651637..1652264 | 967..340 | 3140 | 100 | Minus |
3L | 28110227 | 3L | 1652332..1652483 | 339..188 | 760 | 100 | Minus |
3L | 28110227 | 3L | 1652690..1652799 | 126..17 | 550 | 100 | Minus |
3L | 28110227 | 3L | 1652566..1652628 | 189..127 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:53:41 has no hits.
BS14133.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:53 Download gff for
BS14133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-RA | 1..951 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:10 Download gff for
BS14133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-RA | 113..1073 | 9..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:20 Download gff for
BS14133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-RA | 102..1052 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:53 Download gff for
BS14133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-RA | 113..1073 | 9..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:38 Download gff for
BS14133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-RA | 102..1052 | 17..967 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:38 Download gff for
BS14133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1651637..1652264 | 340..967 | 100 | <- | Minus |
3L | 1652332..1652482 | 189..339 | 100 | <- | Minus |
3L | 1652567..1652628 | 127..188 | 100 | <- | Minus |
3L | 1652690..1652799 | 17..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:20 Download gff for
BS14133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1651637..1652264 | 340..967 | 100 | <- | Minus |
arm_3L | 1652332..1652482 | 189..339 | 100 | <- | Minus |
arm_3L | 1652567..1652628 | 127..188 | 100 | <- | Minus |
arm_3L | 1652690..1652799 | 17..126 | 100 | | Minus |
BS14133.pep Sequence
Translation from 16 to 966
> BS14133.pep
MEFPPCPPSLKSIQHFLKLAQEHDTRDVVIAYWARLYALQVGLKASTQTG
EETKLLLGIMDWLEQMKKQYAENEAITNEVAAQAHIENYALKLFLYADKQ
DREENFGKNVVKAFYSSGVLYDILQTFGELSEEALHNRKYAKWKAAYIHN
CLKNGETPIPGPLPDDDDEAELEGENANASADTSPEDAAGAAAPAPYQPE
PDSQPPAPSSPTTSGVVPPTAEEVLNNPNKLPSPPVDEEKPGGFVPYVPT
AQPNPATAATIYQPIVPVAGVQITPDQMITAQKYCKYAGSALNYDDVKTA
IENLQKALKLLSTGSE*
BS14133.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7967-PA | 316 | CG7967-PA | 1..316 | 1..316 | 1661 | 100 | Plus |