Clone Sequence Records
BS14141.5prime Sequence
363 bp (363 high quality bases) assembled on 2006-10-13
> BS14141.5prime
GAAGTTATCAGTCGACATGGCAGATAAAAAGGTGGGTGGCAACAATGACG
GTAAGGAGAAGCGCCGCAAGGAGTCCATTCTGGACCTCTCCAAGTACTTG
GAGAAACAGATCCGCGTGAAATTCGCGGGCGGCCGCGAGGCATCCGGAAT
CCTCAAGGGCTACGATGCGCTGCTCAATCTGGTGCTGGACAACACGGTGG
AGTATCTGCGCGACTCGGATGAGCCCTACAAACTGACCGAGGAGCAGACC
CGCAGCCTGGGACTGGTCGTCTGTCGCGGCACAGCCCTCGTCCTCATTTG
TCCGCAAGACGGAGTCGAGAGCATCGCCAATCCGTTTATAACGCAATAGA
AGCTTTCTAGACC
BS14141.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13277-PA | 333 | CG13277-RA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LSm7-RB | 466 | CG13277-RB | 41..373 | 17..349 | 1665 | 100 | Plus |
LSm7-RC | 544 | CG13277-RC | 41..373 | 17..349 | 1665 | 100 | Plus |
LSm7-RA | 705 | CG13277-RA | 41..373 | 17..349 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16742669..16742988 | 349..30 | 1600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:27:10 has no hits.
BS14141.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:15 Download gff for
BS14141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13277-PA | 1..333 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:51:50 Download gff for
BS14141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LSm7-RA | 34..383 | 9..356 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:00:57 Download gff for
BS14141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LSm7-RA | 34..383 | 9..356 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:00:57 Download gff for
BS14141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16742659..16742986 | 32..356 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:51:50 Download gff for
BS14141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16742659..16742986 | 32..356 | 98 | <- | Minus |
BS14141.complete Sequence
365 bp assembled on 2012-04-26
GenBank Submission: KX803256
> BS14141.complete
GAAGTTATCAGTCGACATGGCAGATAAAAAGGTGGGTGGCAACAATGACG
GTAAGGAGAAGCGCCGCAAGGAGTCCATTCTGGACCTCTCCAAGTACTTG
GAGAAACAGATCCGCGTGAAATTCGCGGGCGGCCGCGAGGCATCCGGAAT
CCTCAAGGGCTACGATGCGCTGCTCAATCTGGTGCTGGACAACACGGTGG
AGTATCTGCGCGACTCGGATGAGCCCTACAAACTGACCGAGGAGCAGACC
CGCAGCCTGGGACTGGTCGTCTGTCGCGGCACAGCCCTCGTCCTCATTTG
TCCGCAAGACGGAGTCGAGAGCATCGCCAATCCGTTTATAACGCAATAGA
AGCTTTCTAGACCAT
BS14141.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LSm7-RB | 333 | CG13277-PB | 1..333 | 17..349 | 1665 | 100 | Plus |
LSm7-RC | 333 | CG13277-PC | 1..333 | 17..349 | 1665 | 100 | Plus |
LSm7-RA | 333 | CG13277-PA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:28:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LSm7-RB | 466 | CG13277-RB | 41..373 | 17..349 | 1665 | 100 | Plus |
LSm7-RC | 544 | CG13277-RC | 41..373 | 17..349 | 1665 | 100 | Plus |
LSm7-RA | 705 | CG13277-RA | 41..373 | 17..349 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16742669..16742988 | 349..30 | 1600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:28:52 has no hits.
BS14141.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-26 12:45:46 Download gff for
BS14141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LSm7-RA | 30..362 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:51 Download gff for
BS14141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LSm7-RA | 41..373 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:11 Download gff for
BS14141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LSm7-RA | 41..373 | 17..349 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:11 Download gff for
BS14141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16742669..16742986 | 32..349 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:51 Download gff for
BS14141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16742669..16742986 | 32..349 | 100 | <- | Minus |
BS14141.pep Sequence
Translation from 16 to 348
> BS14141.pep
MADKKVGGNNDGKEKRRKESILDLSKYLEKQIRVKFAGGREASGILKGYD
ALLNLVLDNTVEYLRDSDEPYKLTEEQTRSLGLVVCRGTALVLICPQDGV
ESIANPFITQ*
BS14141.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LSm7-PB | 110 | CG13277-PB | 1..110 | 1..110 | 557 | 100 | Plus |
LSm7-PC | 110 | CG13277-PC | 1..110 | 1..110 | 557 | 100 | Plus |
LSm7-PA | 110 | CG13277-PA | 1..110 | 1..110 | 557 | 100 | Plus |
SmG-PB | 76 | CG9742-PB | 8..76 | 23..100 | 142 | 35.9 | Plus |
SmG-PA | 76 | CG9742-PA | 8..76 | 23..100 | 142 | 35.9 | Plus |