Clone BS14146 Report

Search the DGRC for BS14146

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:141
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptYL-1-RA
Protein status:BS14146.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14146.3prime Sequence

650 bp (527 high quality bases) assembled on 2006-10-13

> BS14146.3prime
ATGGTCTAGAAAGCTTTTAGTTATCTCCGTTTTTGCTGGCAGCTGCCGAA
GCCTTCAGACGATTCTCCTTGACCAGCTTGCGCCATTCCAGCCATTTGGC
CAGTTCGGGTTGCTCGCTGCCGCCGCCTTGCTGTTCCAGCTGCATGTAGT
AGGCTTCGCGCAGAATTTTGAAGGCCTGGATGCTGTAGTATGGCTGCTGT
GTGATCGGGTCAAAGTAACGGGCTGGCAGCCTGGTGATTGGACAGATGCC
ATTGCTGGCTTTGGGAGGCGCCTTGTGGCGGAAGAGGCTTTGAAACACCT
TGTCATTGAAATCGTTCTCGATTGTAACGAATGTGCGTTCGCACTTCCCA
GCAAGATCCTTTGAATCGACCGCAGGGTTTGCTCCGCGAGTGGGCTTTCG
CATCGCTGGCATGGTTAGTGAGTGGTAGCGTATCGTGGGTCCGGAGAACG
TGCGCTTGGTGGGACGTGATTTCTTCTTCTCCAGCTCCATTTTCTGGAAT
TTCTCCAAAGATTTAGTGTTTTCTTCCTCGGTTATTTTGGCCTCCTCCAG
CAGCTCCTCCTGCGTGGGCATGTAGTCCTCCACGCGCACCTTCTTCTTTT
TGCGCTTGCGGGCATCGTCCAACTCTTTGAGGCGTATTTTGGTAGCCTGG

BS14146.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4621-PA 1056 YL-1-RA 424..1056 649..17 3165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
YL-1-RB 1456 CG4621-RB 535..1167 649..17 3165 100 Minus
YL-1-RA 1233 CG4621-RA 535..1167 649..17 3165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10971316..10971804 505..17 2445 100 Minus
2L 23513712 2L 10971113..10971257 649..505 725 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:56:17 has no hits.

BS14146.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:18 Download gff for BS14146.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4621-PA 422..1056 17..650 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:12 Download gff for BS14146.3prime
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 533..1177 9..650 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:36 Download gff for BS14146.3prime
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 533..1177 9..650 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:36 Download gff for BS14146.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10971111..10971257 505..650 99 -> Minus
2L 10971317..10971814 9..504 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:12 Download gff for BS14146.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10971111..10971257 505..650 99 -> Minus
arm_2L 10971317..10971814 9..504 99   Minus

BS14146.5prime Sequence

564 bp (490 high quality bases) assembled on 2006-10-13

> BS14146.5prime
GAAGTTATCAGTCGACATGGCTGCCTCGCGATCACGGCGCAACAATGCCG
GCAACAAAATAGCTCATTTGCTCAATGAGGAAGAGGAGGACGACTTTTAC
AAAACGTCCTATGGTGGATTTCAGGAAGACGAAGAGGATAAGGAATACGA
GCAAAAAGACGAAGAGGAAGATGTGGTTGACTCCGACTTCAGTATCGATG
AGAACGACGAGCCCGTTTCGGATCAGGAAGAGGCGCCCGAGAAAAAGCGG
AAACGCGGTGTCGTTAACACAAAGGCTTATAAGGAAACCAAGCCTGCAGT
CAAAAAGGAAACAAAGGCAACGCCGGCCCTGCACAAGAAACGACCTGGTG
GTGGGGTAACGAAACGGCGGCCACGTCCACGCTTCACGGTCCTCGATTCC
GGCCGCAAATCCATACGCACTTCCACGGCCATCAAGACACAGGCTACCAA
AATACGCCTCAAAGAGTTGGACGATGCCCGCAAGCGCAAAAAGAAGAAGG
TGCGCGTGGAGGACTACATGCCCACGCAGGAGGAGCTGCTGGAGGAGGCC
AAAATAACCGAGGA

BS14146.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4621-PA 1056 YL-1-RA 1..548 17..564 2715 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
YL-1-RB 1456 CG4621-RB 112..659 17..564 2725 99.8 Plus
YL-1-RA 1233 CG4621-RA 112..659 17..564 2725 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10970955..10971237 282..564 1415 100 Plus
2L 23513712 2L 10970748..10970881 151..284 670 100 Plus
2L 23513712 2L 10970554..10970688 17..151 660 99.3 Plus
Blast to na_te.dros performed 2015-02-06 10:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 301..349 126..173 107 71.4 Plus

BS14146.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:22 Download gff for BS14146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4621-PA 1..547 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:22 Download gff for BS14146.5prime
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 112..658 17..563 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:39 Download gff for BS14146.5prime
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 112..658 17..563 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:39 Download gff for BS14146.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10970554..10970687 17..150 99 -> Plus
2L 10970748..10970880 151..283 100 -> Plus
2L 10970957..10971236 284..563 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:22 Download gff for BS14146.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10970554..10970687 17..150 99 -> Plus
arm_2L 10970748..10970880 151..283 100 -> Plus
arm_2L 10970957..10971236 284..563 100   Plus

BS14146.complete Sequence

1088 bp assembled on 2006-11-01

GenBank Submission: FJ637608

> BS14146.complete
GAAGTTATCAGTCGACATGGCTGCCTCGCGATCACGGCGCAACAATGCCG
GCAACAAAATAGCTCATTTGCTCAATGAGGAAGAGGAGGACGACTTTTAC
AAAACGTCCTATGGTGGATTTCAGGAAGACGAAGAGGATAAGGAATACGA
GCAAAAAGACGAAGAGGAAGATGTGGTTGACTCCGACTTCAGTATCGATG
AGAACGACGAGCCCGTTTCGGATCAGGAAGAGGCGCCCGAGAAAAAGCGG
AAACGCGGTGTCGTTAACACAAAGGCTTATAAGGAAACCAAGCCTGCAGT
CAAAAAGGAAACAAAGGCAACGCCGGCCCTGCACAAGAAACGACCTGGTG
GTGGGGTAACGAAACGGCGGCCACGTCCACGCTTCACGGTCCTCGATTCC
GGCCGCAAATCCATACGCACTTCCACGGCCATCAAGACACAGGCTACCAA
AATACGCCTCAAAGAGTTGGACGATGCCCGCAAGCGCAAAAAGAAGAAGG
TGCGCGTGGAGGACTACATGCCCACGCAGGAGGAGCTGCTGGAGGAGGCC
AAAATAACCGAGGAAGAAAACACTAAATCTTTGGAGAAATTCCAGAAAAT
GGAGCTGGAGAAGAAGAAATCACGTCCCACCAAGCGCACGTTCTCCGGAC
CCACGATACGCTACCACTCACTAACCATGCCAGCGATGCGAAAGCCCACT
CGCGGAGCAAACCCTGCGGTCGATTCAAAGGATCTTGCTGGGAAGTGCGA
ACGCACATTCGTTACAATCGAGAACGATTTCAATGACAAGGTGTTTCAAA
GCCTCTTCCGCCACAAGGCGCCTCCCAAAGCCAGCAATGGCATCTGTCCA
ATCACCAGGCTGCCAGCCCGTTACTTTGACCCGATCACACAGCAGCCATA
CTACAGCATCCAGGCCTTCAAAATTCTGCGCGAAGCCTACTACATGCAGC
TGGAACAGCAAGGCGGCGGCAGCGAGCAACCCGAACTGGCCAAATGGCTG
GAATGGCGCAAGCTGGTCAAGGAGAATCGTCTGAAGGCTTCGGCAGCTGC
CAGCAAAAACGGAGATAACTAAAAGCTTTCTAGACCAT

BS14146.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
YL-1-RB 1056 CG4621-PB 1..1056 17..1072 5265 99.9 Plus
YL-1-RA 1056 CG4621-PA 1..1056 17..1072 5265 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
YL-1-RB 1456 CG4621-RB 112..1167 17..1072 5265 99.9 Plus
YL-1-RA 1233 CG4621-RA 112..1167 17..1072 5265 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10971316..10971804 584..1072 2445 100 Plus
2L 23513712 2L 10970955..10971257 282..584 1515 100 Plus
2L 23513712 2L 10970748..10970881 151..284 670 100 Plus
2L 23513712 2L 10970554..10970688 17..151 660 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 13:45:54 has no hits.

BS14146.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:54 Download gff for BS14146.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 1..1056 17..1072 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:11 Download gff for BS14146.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 100..1165 17..1080 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:14 Download gff for BS14146.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 112..1165 17..1070 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:55 Download gff for BS14146.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 100..1165 17..1080 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:24 Download gff for BS14146.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 112..1165 17..1070 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:24 Download gff for BS14146.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10970554..10970687 17..150 99 -> Plus
2L 10970748..10970880 151..283 100 -> Plus
2L 10970957..10971257 284..584 100 -> Plus
2L 10971317..10971802 585..1070 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:14 Download gff for BS14146.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10970554..10970687 17..150 99 -> Plus
arm_2L 10970748..10970880 151..283 100 -> Plus
arm_2L 10970957..10971257 284..584 100 -> Plus
arm_2L 10971317..10971802 585..1070 100   Plus

BS14146.pep Sequence

Translation from 16 to 1071

> BS14146.pep
MAASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEE
EDVVDSDFSIDENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETK
ATPALHKKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKE
LDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKK
KSRPTKRTFSGPTIRYHSLTMPAMRKPTRGANPAVDSKDLAGKCERTFVT
IENDFNDKVFQSLFRHKAPPKASNGICPITRLPARYFDPITQQPYYSIQA
FKILREAYYMQLEQQGGGSEQPELAKWLEWRKLVKENRLKASAAASKNGD
N*

BS14146.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
YL-1-PB 351 CG4621-PB 1..351 1..351 1818 100 Plus
YL-1-PA 351 CG4621-PA 1..351 1..351 1818 100 Plus