Clone Sequence Records
BS14146.3prime Sequence
650 bp (527 high quality bases) assembled on 2006-10-13
> BS14146.3prime
ATGGTCTAGAAAGCTTTTAGTTATCTCCGTTTTTGCTGGCAGCTGCCGAA
GCCTTCAGACGATTCTCCTTGACCAGCTTGCGCCATTCCAGCCATTTGGC
CAGTTCGGGTTGCTCGCTGCCGCCGCCTTGCTGTTCCAGCTGCATGTAGT
AGGCTTCGCGCAGAATTTTGAAGGCCTGGATGCTGTAGTATGGCTGCTGT
GTGATCGGGTCAAAGTAACGGGCTGGCAGCCTGGTGATTGGACAGATGCC
ATTGCTGGCTTTGGGAGGCGCCTTGTGGCGGAAGAGGCTTTGAAACACCT
TGTCATTGAAATCGTTCTCGATTGTAACGAATGTGCGTTCGCACTTCCCA
GCAAGATCCTTTGAATCGACCGCAGGGTTTGCTCCGCGAGTGGGCTTTCG
CATCGCTGGCATGGTTAGTGAGTGGTAGCGTATCGTGGGTCCGGAGAACG
TGCGCTTGGTGGGACGTGATTTCTTCTTCTCCAGCTCCATTTTCTGGAAT
TTCTCCAAAGATTTAGTGTTTTCTTCCTCGGTTATTTTGGCCTCCTCCAG
CAGCTCCTCCTGCGTGGGCATGTAGTCCTCCACGCGCACCTTCTTCTTTT
TGCGCTTGCGGGCATCGTCCAACTCTTTGAGGCGTATTTTGGTAGCCTGG
BS14146.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4621-PA | 1056 | YL-1-RA | 424..1056 | 649..17 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
YL-1-RB | 1456 | CG4621-RB | 535..1167 | 649..17 | 3165 | 100 | Minus |
YL-1-RA | 1233 | CG4621-RA | 535..1167 | 649..17 | 3165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10971316..10971804 | 505..17 | 2445 | 100 | Minus |
2L | 23513712 | 2L | 10971113..10971257 | 649..505 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:56:17 has no hits.
BS14146.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:18 Download gff for
BS14146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4621-PA | 422..1056 | 17..650 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:12 Download gff for
BS14146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 533..1177 | 9..650 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:36 Download gff for
BS14146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 533..1177 | 9..650 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:36 Download gff for
BS14146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10971111..10971257 | 505..650 | 99 | -> | Minus |
2L | 10971317..10971814 | 9..504 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:12 Download gff for
BS14146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10971111..10971257 | 505..650 | 99 | -> | Minus |
arm_2L | 10971317..10971814 | 9..504 | 99 | | Minus |
BS14146.5prime Sequence
564 bp (490 high quality bases) assembled on 2006-10-13
> BS14146.5prime
GAAGTTATCAGTCGACATGGCTGCCTCGCGATCACGGCGCAACAATGCCG
GCAACAAAATAGCTCATTTGCTCAATGAGGAAGAGGAGGACGACTTTTAC
AAAACGTCCTATGGTGGATTTCAGGAAGACGAAGAGGATAAGGAATACGA
GCAAAAAGACGAAGAGGAAGATGTGGTTGACTCCGACTTCAGTATCGATG
AGAACGACGAGCCCGTTTCGGATCAGGAAGAGGCGCCCGAGAAAAAGCGG
AAACGCGGTGTCGTTAACACAAAGGCTTATAAGGAAACCAAGCCTGCAGT
CAAAAAGGAAACAAAGGCAACGCCGGCCCTGCACAAGAAACGACCTGGTG
GTGGGGTAACGAAACGGCGGCCACGTCCACGCTTCACGGTCCTCGATTCC
GGCCGCAAATCCATACGCACTTCCACGGCCATCAAGACACAGGCTACCAA
AATACGCCTCAAAGAGTTGGACGATGCCCGCAAGCGCAAAAAGAAGAAGG
TGCGCGTGGAGGACTACATGCCCACGCAGGAGGAGCTGCTGGAGGAGGCC
AAAATAACCGAGGA
BS14146.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4621-PA | 1056 | YL-1-RA | 1..548 | 17..564 | 2715 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
YL-1-RB | 1456 | CG4621-RB | 112..659 | 17..564 | 2725 | 99.8 | Plus |
YL-1-RA | 1233 | CG4621-RA | 112..659 | 17..564 | 2725 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:35:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10970955..10971237 | 282..564 | 1415 | 100 | Plus |
2L | 23513712 | 2L | 10970748..10970881 | 151..284 | 670 | 100 | Plus |
2L | 23513712 | 2L | 10970554..10970688 | 17..151 | 660 | 99.3 | Plus |
Blast to na_te.dros performed 2015-02-06 10:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TAHRE | 10463 | TAHRE OSV 10463bp | 301..349 | 126..173 | 107 | 71.4 | Plus |
BS14146.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:22 Download gff for
BS14146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4621-PA | 1..547 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:22 Download gff for
BS14146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 112..658 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:39 Download gff for
BS14146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 112..658 | 17..563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:39 Download gff for
BS14146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10970554..10970687 | 17..150 | 99 | -> | Plus |
2L | 10970748..10970880 | 151..283 | 100 | -> | Plus |
2L | 10970957..10971236 | 284..563 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:22 Download gff for
BS14146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10970554..10970687 | 17..150 | 99 | -> | Plus |
arm_2L | 10970748..10970880 | 151..283 | 100 | -> | Plus |
arm_2L | 10970957..10971236 | 284..563 | 100 | | Plus |
BS14146.complete Sequence
1088 bp assembled on 2006-11-01
GenBank Submission: FJ637608
> BS14146.complete
GAAGTTATCAGTCGACATGGCTGCCTCGCGATCACGGCGCAACAATGCCG
GCAACAAAATAGCTCATTTGCTCAATGAGGAAGAGGAGGACGACTTTTAC
AAAACGTCCTATGGTGGATTTCAGGAAGACGAAGAGGATAAGGAATACGA
GCAAAAAGACGAAGAGGAAGATGTGGTTGACTCCGACTTCAGTATCGATG
AGAACGACGAGCCCGTTTCGGATCAGGAAGAGGCGCCCGAGAAAAAGCGG
AAACGCGGTGTCGTTAACACAAAGGCTTATAAGGAAACCAAGCCTGCAGT
CAAAAAGGAAACAAAGGCAACGCCGGCCCTGCACAAGAAACGACCTGGTG
GTGGGGTAACGAAACGGCGGCCACGTCCACGCTTCACGGTCCTCGATTCC
GGCCGCAAATCCATACGCACTTCCACGGCCATCAAGACACAGGCTACCAA
AATACGCCTCAAAGAGTTGGACGATGCCCGCAAGCGCAAAAAGAAGAAGG
TGCGCGTGGAGGACTACATGCCCACGCAGGAGGAGCTGCTGGAGGAGGCC
AAAATAACCGAGGAAGAAAACACTAAATCTTTGGAGAAATTCCAGAAAAT
GGAGCTGGAGAAGAAGAAATCACGTCCCACCAAGCGCACGTTCTCCGGAC
CCACGATACGCTACCACTCACTAACCATGCCAGCGATGCGAAAGCCCACT
CGCGGAGCAAACCCTGCGGTCGATTCAAAGGATCTTGCTGGGAAGTGCGA
ACGCACATTCGTTACAATCGAGAACGATTTCAATGACAAGGTGTTTCAAA
GCCTCTTCCGCCACAAGGCGCCTCCCAAAGCCAGCAATGGCATCTGTCCA
ATCACCAGGCTGCCAGCCCGTTACTTTGACCCGATCACACAGCAGCCATA
CTACAGCATCCAGGCCTTCAAAATTCTGCGCGAAGCCTACTACATGCAGC
TGGAACAGCAAGGCGGCGGCAGCGAGCAACCCGAACTGGCCAAATGGCTG
GAATGGCGCAAGCTGGTCAAGGAGAATCGTCTGAAGGCTTCGGCAGCTGC
CAGCAAAAACGGAGATAACTAAAAGCTTTCTAGACCAT
BS14146.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
YL-1-RB | 1056 | CG4621-PB | 1..1056 | 17..1072 | 5265 | 99.9 | Plus |
YL-1-RA | 1056 | CG4621-PA | 1..1056 | 17..1072 | 5265 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
YL-1-RB | 1456 | CG4621-RB | 112..1167 | 17..1072 | 5265 | 99.9 | Plus |
YL-1-RA | 1233 | CG4621-RA | 112..1167 | 17..1072 | 5265 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10971316..10971804 | 584..1072 | 2445 | 100 | Plus |
2L | 23513712 | 2L | 10970955..10971257 | 282..584 | 1515 | 100 | Plus |
2L | 23513712 | 2L | 10970748..10970881 | 151..284 | 670 | 100 | Plus |
2L | 23513712 | 2L | 10970554..10970688 | 17..151 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:45:54 has no hits.
BS14146.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:54 Download gff for
BS14146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 1..1056 | 17..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:11 Download gff for
BS14146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 100..1165 | 17..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:14 Download gff for
BS14146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 112..1165 | 17..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:55 Download gff for
BS14146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 100..1165 | 17..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:24 Download gff for
BS14146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 112..1165 | 17..1070 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:24 Download gff for
BS14146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10970554..10970687 | 17..150 | 99 | -> | Plus |
2L | 10970748..10970880 | 151..283 | 100 | -> | Plus |
2L | 10970957..10971257 | 284..584 | 100 | -> | Plus |
2L | 10971317..10971802 | 585..1070 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:14 Download gff for
BS14146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10970554..10970687 | 17..150 | 99 | -> | Plus |
arm_2L | 10970748..10970880 | 151..283 | 100 | -> | Plus |
arm_2L | 10970957..10971257 | 284..584 | 100 | -> | Plus |
arm_2L | 10971317..10971802 | 585..1070 | 100 | | Plus |
BS14146.pep Sequence
Translation from 16 to 1071
> BS14146.pep
MAASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEE
EDVVDSDFSIDENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETK
ATPALHKKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKE
LDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKK
KSRPTKRTFSGPTIRYHSLTMPAMRKPTRGANPAVDSKDLAGKCERTFVT
IENDFNDKVFQSLFRHKAPPKASNGICPITRLPARYFDPITQQPYYSIQA
FKILREAYYMQLEQQGGGSEQPELAKWLEWRKLVKENRLKASAAASKNGD
N*
BS14146.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
YL-1-PB | 351 | CG4621-PB | 1..351 | 1..351 | 1818 | 100 | Plus |
YL-1-PA | 351 | CG4621-PA | 1..351 | 1..351 | 1818 | 100 | Plus |