Clone BS14166 Report

Search the DGRC for BS14166

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:141
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG4729-RA
Protein status:BS14166.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14166.3prime Sequence

668 bp (558 high quality bases) assembled on 2006-10-13

> BS14166.3prime
ATGGTCTAGAAAGCTTTTACTTTGCGACCGACTTGGAGGATCCATAATTA
GATGCCTTGCTGATCTGCGTCTTGTTGATGGCCTGACCCATGAGCCAGTA
AAAAAGTCCCAGGACGGAAAGTGCGGTGATAAAGGCCGTCCAGTTGGCCG
CCAGCAGGGATGTGATCACGTAGTAGAAAATGCAGGACAGAGAGAATACC
GCCCAGCAGACAAAGTTCACGAGTGAGCACAGCCGGCGTTTATTCACATA
TGCCGGAACCTCCTTTATGCCGGACGTCTTAAAGAAGCTGCCCGTCTCCA
GGAAGCTATCGATGATCTTGTCCTTCTCCACGAACAGGTTCTGCAGCCAG
GCGGCCGCCTCCTTCTCATCCTCCGGAACCTGTTCCAGTGGAATACGCCT
CATCAGCAGGTGCGGTTCCACGCTCTTTCCATGCAGCAAACTCAGCATTG
TGGCGGGGGTCTTATCTGTGGGCCTGTACGCTAGATTAATGTCGTAGATT
ACCGGACAGAGACCGCGGATGGGTGCCAAGCTGGCGGTGAATCCCTTGGT
GCGCGGGATCAAATGGTGCTTCAGCACCGTCATGCCCCTCTCCTGGGCGA
ATTTTACGGATGCCTCGTGCTTGGCGGGAGTGAAGCGAGTGCCCTCGGCG
TTGAGCAAAGCCAGGTGG

BS14166.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-PA 1161 CG4729-RA 519..1161 659..17 3215 100 Minus
CG4729-PC 1161 CG4729-RC 519..1161 659..17 3215 100 Minus
CG4729-PB 1161 CG4729-RB 519..1161 659..17 3215 100 Minus
CG4729-PD 432 CG4729-RD 1..432 448..17 2160 100 Minus
CG4753-PB 1143 CG4753-RB 838..886 325..277 145 91.8 Minus
CG4753-PA 1143 CG4753-RA 838..886 325..277 145 91.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-RE 1849 CG4729-RE 897..1549 668..17 3240 99.8 Minus
CG4729-RB 1672 CG4729-RB 720..1372 668..17 3240 99.8 Minus
CG4729-RC 1676 CG4729-RC 724..1376 668..17 3240 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16382382..16382741 103..462 1800 100 Plus
3L 28110227 3L 16383331..16383529 461..659 995 100 Plus
3L 28110227 3L 16382072..16382157 17..102 430 100 Plus
3L 28110227 3L 16379425..16379558 258..391 325 82.8 Plus
3L 28110227 3L 16379722..16379896 483..657 260 76.6 Plus
Blast to na_te.dros performed on 2015-02-10 17:19:29 has no hits.

BS14166.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:35 Download gff for BS14166.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-PB 509..1161 17..668 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:49 Download gff for BS14166.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-RC 724..1381 9..668 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:46 Download gff for BS14166.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-RC 724..1381 9..668 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:46 Download gff for BS14166.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16382067..16382157 9..102 96 <- Plus
3L 16382382..16382739 103..460 100 <- Plus
3L 16383331..16383539 461..668 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:49 Download gff for BS14166.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16375167..16375257 9..102 96 <- Plus
arm_3L 16375482..16375839 103..460 100 <- Plus
arm_3L 16376431..16376639 461..668 99   Plus

BS14166.5prime Sequence

584 bp (559 high quality bases) assembled on 2006-10-13

> BS14166.5prime
GAAGTTATCAGTCGACATGGGTTCCCTGGAGAAGCTGAAACAATTGAGAC
TGATACACCTGTGCATCGCGCTCACCTTCTTTACCAGCGGGCTGTGCATC
AACTTTATCCAGCTGCTGATGCACGTCTTTATCAAGCCCATAGACAAGCG
ACTCTTCCGCAAGTTGATGTACTATGCCTGCTATTCGCTTTACTCCCAAC
TTATCTTCGTGTCCGATTGGTATGCCGGCAGCAAGATGACTGTCTACATG
GACAAGGAGGACTTCGAGAAGCATGCCGGCAAGGAACACGTCCTTCTGAT
CATGAACCATAAATACGAGATCGATTGGCTCAACGGCTGGATGATCTGCG
AAAAGTTGGGCGTGCTGGGCAACTGCAAGGCCTATGCGAAGAAGGCAATC
CGCTACGTGCCCATCATCGGCTGGGGCTGGTGGCTGGCCGAGTTCGTCTT
CCTCAATCGAAACTTCGACCAGGACAAGACCATCATCACCGAACAGCTCA
AGGTGGTCTTCTCCTATCCCGATCCCACCTGGCTTTTGCTCAACGCCGAG
GGCACTCGCTTCACTCCCGCCAAGCACGAGGCAT

BS14166.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-PA 1161 CG4729-RA 1..568 17..584 2840 100 Plus
CG4729-PC 1161 CG4729-RC 1..568 17..584 2840 100 Plus
CG4729-PB 1161 CG4729-RB 1..568 17..584 2840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-RE 1849 CG4729-RE 389..956 17..584 2840 100 Plus
CG4729-RB 1672 CG4729-RB 212..779 17..584 2840 100 Plus
CG4729-RC 1676 CG4729-RC 216..783 17..584 2840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16383480..16383866 584..198 1935 100 Minus
3L 28110227 3L 16383927..16384107 197..17 905 100 Minus
3L 28110227 3L 16379853..16380156 580..277 410 75.7 Minus
Blast to na_te.dros performed on 2015-02-10 18:05:42 has no hits.

BS14166.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:36 Download gff for BS14166.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-PB 1..568 17..584 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:38 Download gff for BS14166.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-RC 206..783 5..584 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:20:50 Download gff for BS14166.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-RC 206..783 5..584 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:20:50 Download gff for BS14166.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16383480..16383866 198..584 100 <- Minus
3L 16383927..16384119 5..197 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:38 Download gff for BS14166.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16376580..16376966 198..584 100 <- Minus
arm_3L 16377027..16377219 5..197 97   Minus

BS14166.complete Sequence

1193 bp assembled on 2006-11-01

GenBank Submission: FJ637610

> BS14166.complete
GAAGTTATCAGTCGACATGGGTTCCCTGGAGAAGCTGAAACAATTGAGAC
TGATACACCTGTGCATCGCGCTCACCTTCTTTACCAGCGGGCTGTGCATC
AACTTTATCCAGCTGCTGATGCACGTCTTTATCAAGCCCATAGACAAGCG
ACTCTTCCGCAAGTTGATGTACTATGCCTGCTATTCGCTTTACTCCCAAC
TTATCTTCGTGTCCGATTGGTATGCCGGCAGCAAGATGACTGTCTACATG
GACAAGGAGGACTTCGAGAAGCATGCCGGCAAGGAACACGTCCTTCTGAT
CATGAACCATAAATACGAGATCGATTGGCTCAACGGCTGGATGATCTGCG
AAAAGTTGGGCGTGCTGGGCAACTGCAAGGCCTATGCGAAGAAGGCAATC
CGCTACGTGCCCATCATCGGCTGGGGCTGGTGGCTGGCCGAGTTCGTCTT
CCTCAATCGAAACTTCGACCAGGACAAGACCATCATCACCGAACAGCTCA
AGGTGGTCTTCTCCTATCCCGATCCCACCTGGCTTTTGCTCAACGCCGAG
GGCACTCGCTTCACTCCCGCCAAGCACGAGGCATCCGTAAAATTCGCCCA
GGAGAGGGGCATGACGGTGCTGAAGCACCATTTGATCCCGCGCACCAAGG
GATTCACCGCCAGCTTGGCACCCATCCGCGGTCTCTGTCCGGTAATCTAC
GACATTAATCTAGCGTACAGGCCCACAGATAAGACCCCCGCCACAATGCT
GAGTTTGCTGCATGGAAAGAGCGTGGAACCGCACCTGCTGATGAGGCGTA
TTCCACTGGAACAGGTTCCGGAGGATGAGAAGGAGGCGGCCGCCTGGCTG
CAGAACCTGTTCGTGGAGAAGGACAAGATCATCGATAGCTTCCTGGAGAC
GGGCAGCTTCTTTAAGACGTCCGGCATAAAGGAGGTTCCGGCATATGTGA
ATAAACGCCGGCTGTGCTCACTCGTGAACTTTGTCTGCTGGGCGGTATTC
TCTCTGTCCTGCATTTTCTACTACGTGATCACATCCCTGCTGGCGGCCAA
CTGGACGGCCTTTATCACCGCACTTTCCGTCCTGGGACTTTTTTACTGGC
TCATGGGTCAGGCCATCAACAAGACGCAGATCAGCAAGGCATCTAATTAT
GGATCCTCCAAGTCGGTCGCAAAGTAAAAGCTTTCTAGACCAT

BS14166.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-RE 1194 CG4729-PE 34..1194 17..1177 5805 100 Plus
CG4729-RB 1161 CG4729-PB 1..1161 17..1177 5805 100 Plus
CG4729-RC 1161 CG4729-PC 1..1161 17..1177 5805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-RE 1849 CG4729-RE 389..1549 17..1177 5805 100 Plus
CG4729-RB 1672 CG4729-RB 212..1372 17..1177 5805 100 Plus
CG4729-RC 1676 CG4729-RC 216..1376 17..1177 5805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16383331..16383866 733..198 2680 100 Minus
3L 28110227 3L 16382382..16382741 1091..732 1800 100 Minus
3L 28110227 3L 16383927..16384107 197..17 905 100 Minus
3L 28110227 3L 16379722..16380156 711..277 540 74.9 Minus
3L 28110227 3L 16382072..16382157 1177..1092 430 100 Minus
3L 28110227 3L 16379425..16379558 936..803 325 82.8 Minus
Blast to na_te.dros performed on 2014-11-27 16:34:14 has no hits.

BS14166.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:57 Download gff for BS14166.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 1..1161 17..1177 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:13 Download gff for BS14166.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 201..1377 5..1185 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:24 Download gff for BS14166.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RC 216..1374 17..1175 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:57 Download gff for BS14166.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 201..1377 5..1185 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:32 Download gff for BS14166.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RC 216..1374 17..1175 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:32 Download gff for BS14166.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16382382..16382739 734..1091 100 <- Minus
3L 16382074..16382157 1092..1175 100 <- Minus
3L 16383331..16383866 198..733 100 <- Minus
3L 16383927..16384107 17..197 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:24 Download gff for BS14166.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16375174..16375257 1092..1175 100 <- Minus
arm_3L 16375482..16375839 734..1091 100 <- Minus
arm_3L 16376431..16376966 198..733 100 <- Minus
arm_3L 16377027..16377207 17..197 100   Minus

BS14166.pep Sequence

Translation from 16 to 1176

> BS14166.pep
MGSLEKLKQLRLIHLCIALTFFTSGLCINFIQLLMHVFIKPIDKRLFRKL
MYYACYSLYSQLIFVSDWYAGSKMTVYMDKEDFEKHAGKEHVLLIMNHKY
EIDWLNGWMICEKLGVLGNCKAYAKKAIRYVPIIGWGWWLAEFVFLNRNF
DQDKTIITEQLKVVFSYPDPTWLLLNAEGTRFTPAKHEASVKFAQERGMT
VLKHHLIPRTKGFTASLAPIRGLCPVIYDINLAYRPTDKTPATMLSLLHG
KSVEPHLLMRRIPLEQVPEDEKEAAAWLQNLFVEKDKIIDSFLETGSFFK
TSGIKEVPAYVNKRRLCSLVNFVCWAVFSLSCIFYYVITSLLAANWTAFI
TALSVLGLFYWLMGQAINKTQISKASNYGSSKSVAK*

BS14166.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-PB 386 CG4729-PB 1..386 1..386 2043 100 Plus
CG4729-PC 386 CG4729-PC 1..386 1..386 2043 100 Plus
CG4729-PA 386 CG4729-PA 1..386 1..386 2043 100 Plus
CG4729-PE 397 CG4729-PE 12..397 1..386 2043 100 Plus
CG4753-PC 380 CG4753-PC 10..376 15..381 1268 62.7 Plus