Clone Sequence Records
BS14189.complete Sequence
368 bp assembled on 2010-02-09
GenBank Submission: KX801665
> BS14189.complete
GAAGTTATCAGTCGACATGCAGTCCTCCAGCATCTGTGTCCTGGCCATTT
GCGCCTTCGCTCTGCTCTCCACCATTAGGGCTGCTCCTCTGGACGACTCC
CAACATGCCACCATACTAAGATACGACAACGACAACATTGGCACTGATGG
CTACAACTTCGGCTACGAGACCAGTGATGGAGTTACCCGCCAGGAGCAGG
CTGAGGTGAAGAACGCCGGTACCGACCAGGAGGCGCTCAGTGTGCGCGGT
TCCGTCAGCTGGGTTGCTCCCGATGGCCAGACCTACACCCTGCACTACAT
TGCGGATGAGAACGGTTTCCAGCCCCAGGGCGATCATCTGCCCCACAACT
AAAAGCTTTCTAGACCAT
BS14189.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Av-RA | 336 | CG32405-PA | 1..336 | 17..352 | 1680 | 100 | Plus |
Cpr65Ax1-RA | 309 | CG34270-PA | 142..291 | 194..343 | 225 | 76.7 | Plus |
Cpr65Ax2-RB | 309 | CG18777-PB | 142..291 | 194..343 | 225 | 76.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:20:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Av-RA | 642 | CG32405-RA | 112..449 | 15..352 | 1690 | 100 | Plus |
Cpr65Ax1-RA | 389 | CG34270-RA | 190..339 | 194..343 | 225 | 76.7 | Plus |
Cpr65Ax2-RB | 732 | CG18777-RB | 189..338 | 194..343 | 225 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6139416..6139610 | 352..158 | 960 | 99.5 | Minus |
3L | 28110227 | 3L | 6139716..6139863 | 162..15 | 740 | 100 | Minus |
3L | 28110227 | 3L | 6150452..6150601 | 343..194 | 225 | 76.7 | Minus |
3L | 28110227 | 3L | 6147581..6147730 | 343..194 | 225 | 76.7 | Minus |
3L | 28110227 | 3L | 6145138..6145289 | 192..343 | 205 | 75.7 | Plus |
3L | 28110227 | 3L | 6152287..6152379 | 343..251 | 195 | 80.6 | Minus |
3L | 28110227 | 3L | 6133172..6133243 | 343..272 | 180 | 83.3 | Minus |
3L | 28110227 | 3L | 6134853..6134924 | 343..272 | 180 | 83.3 | Minus |
2R | 25286936 | 2R | 12404317..12404355 | 305..343 | 180 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:20:51 has no hits.
BS14189.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:10 Download gff for
BS14189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Av-RA | 1..336 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:15 Download gff for
BS14189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Av-RA | 113..446 | 17..350 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:16 Download gff for
BS14189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Av-RA | 114..447 | 17..350 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:55 Download gff for
BS14189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Av-RA | 113..446 | 17..350 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:14 Download gff for
BS14189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Av-RA | 114..447 | 17..350 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:14 Download gff for
BS14189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6139418..6139605 | 163..350 | 100 | <- | Minus |
3L | 6139716..6139861 | 17..162 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:16 Download gff for
BS14189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6132518..6132705 | 163..350 | 100 | <- | Minus |
arm_3L | 6132816..6132961 | 17..162 | 100 | | Minus |
BS14189.5prime Sequence
366 bp (366 high quality bases) assembled on 2006-10-13
> BS14189.5prime
GAAGTTATCAGTCGACATGCAGTCCTCCAGCATCTGTGTCCTGGCCATTT
GCGCCTTCGCTCTGCTCTCCACCATTAGGGCTGCTCCTCTGGACGACTCC
CAACATGCCACCATACTAAGATACGACAACGACAACATTGGCACTGATGG
CTACAACTTCGGCTACGAGACCAGTGATGGAGTTACCCGCCAGGAGCAGG
CTGAGGTGAAGAACGCCGGTACCGACCAGGAGGCGCTCAGTGTGCGCGGT
TCCGTCAGCTGGGTTGCTCCCGATGGCCAGACCTACACCCTGCACTACAT
TGCGGATGAGAACGGTTTCCAGCCCCAGGGCGATCATCTGCCCCACAACT
AAAAGCTTTCTAGACC
BS14189.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32405-PA | 336 | CG32405-RA | 1..336 | 17..352 | 1680 | 100 | Plus |
CG8505-PA | 405 | CG8505-RA | 289..327 | 305..343 | 170 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Av-RA | 642 | CG32405-RA | 112..449 | 15..352 | 1690 | 100 | Plus |
Cpr65Ax1-RA | 389 | CG34270-RA | 190..339 | 194..343 | 225 | 77.5 | Plus |
Cpr65Ax2-RB | 732 | CG18777-RB | 189..338 | 194..343 | 225 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6139416..6139610 | 352..158 | 960 | 99.5 | Minus |
3L | 28110227 | 3L | 6139716..6139863 | 162..15 | 740 | 100 | Minus |
3L | 28110227 | 3L | 6147581..6147730 | 343..194 | 225 | 76.7 | Minus |
3L | 28110227 | 3L | 6150452..6150601 | 343..194 | 225 | 76.7 | Minus |
3L | 28110227 | 3L | 6145138..6145289 | 192..343 | 205 | 75.7 | Plus |
3L | 28110227 | 3L | 6152287..6152379 | 343..251 | 195 | 80.6 | Minus |
3L | 28110227 | 3L | 6133172..6133243 | 343..272 | 180 | 83.3 | Minus |
3L | 28110227 | 3L | 6134853..6134924 | 343..272 | 180 | 83.3 | Minus |
2R | 25286936 | 2R | 12404317..12404355 | 305..343 | 180 | 97.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:20:16 has no hits.
BS14189.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:54 Download gff for
BS14189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32405-PA | 1..336 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:38:36 Download gff for
BS14189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Av-RA | 112..456 | 15..360 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:28 Download gff for
BS14189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Av-RA | 112..456 | 15..360 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:28 Download gff for
BS14189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6139409..6139605 | 163..360 | 97 | <- | Minus |
3L | 6139716..6139863 | 15..162 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:38:36 Download gff for
BS14189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6132509..6132705 | 163..360 | 97 | <- | Minus |
arm_3L | 6132816..6132963 | 15..162 | 100 | | Minus |
BS14189.3prime Sequence
366 bp (366 high quality bases) assembled on 2006-10-13
> BS14189.3prime
ATGGTCTAGAAAGCTTTTAGTTGTGGGGCAGATGATCGCCCTGGGGCTGG
AAACCGTTCTCATCCGCAATGTAGTGCAGGGTGTAGGTCTGGCCATCGGG
AGCAACCCAGCTGACGGAACCGCGCACACTGAGCGCCTCCTGGTCGGTAC
CGGCGTTCTTCACCTCAGCCTGCTCCTGGCGGGTAACTCCATCACTGGTC
TCGTAGCCGAAGTTGTAGCCATCAGTGCCAATGTTGTCGTTGTCGTATCT
TAGTATGGTGGCATGTTGGGAGTCGTCCAGAGGAGCAGCCCTAATGGTGG
AGAGCAGAGCGAAGGCGCAAATGGCCAGGACACAGATGCTGGAGGACTGC
ATGTCGACTGATAACT
BS14189.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32405-PA | 336 | CG32405-RA | 1..336 | 352..17 | 1680 | 100 | Minus |
CG8505-PA | 405 | CG8505-RA | 289..327 | 64..26 | 170 | 97.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Av-RA | 642 | CG32405-RA | 112..449 | 354..17 | 1690 | 100 | Minus |
Cpr65Ax1-RA | 389 | CG34270-RA | 190..339 | 175..26 | 225 | 77.5 | Minus |
Cpr65Ax2-RB | 732 | CG18777-RB | 189..338 | 175..26 | 225 | 77.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6139416..6139610 | 17..211 | 960 | 99.5 | Plus |
3L | 28110227 | 3L | 6139716..6139863 | 207..354 | 740 | 100 | Plus |
3L | 28110227 | 3L | 6147581..6147730 | 26..175 | 225 | 76.7 | Plus |
3L | 28110227 | 3L | 6150452..6150601 | 26..175 | 225 | 76.7 | Plus |
3L | 28110227 | 3L | 6145138..6145289 | 177..26 | 205 | 75.7 | Minus |
3L | 28110227 | 3L | 6152287..6152379 | 26..118 | 195 | 80.6 | Plus |
3L | 28110227 | 3L | 6133172..6133243 | 26..97 | 180 | 83.3 | Plus |
3L | 28110227 | 3L | 6134853..6134924 | 26..97 | 180 | 83.3 | Plus |
2R | 25286936 | 2R | 12404317..12404355 | 64..26 | 180 | 97.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:30:27 has no hits.
BS14189.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:53 Download gff for
BS14189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32405-PA | 1..336 | 17..352 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:44:57 Download gff for
BS14189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Av-RA | 112..456 | 9..354 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:54:46 Download gff for
BS14189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Av-RA | 112..456 | 9..354 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:54:46 Download gff for
BS14189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6139409..6139605 | 9..206 | 97 | <- | Plus |
3L | 6139716..6139863 | 207..354 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:44:57 Download gff for
BS14189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6132509..6132705 | 9..206 | 97 | <- | Plus |
arm_3L | 6132816..6132963 | 207..354 | 100 | | Plus |
BS14189.pep Sequence
Translation from 16 to 351
> BS14189.pep
MQSSSICVLAICAFALLSTIRAAPLDDSQHATILRYDNDNIGTDGYNFGY
ETSDGVTRQEQAEVKNAGTDQEALSVRGSVSWVAPDGQTYTLHYIADENG
FQPQGDHLPHN*
BS14189.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Av-PA | 111 | CG32405-PA | 1..111 | 1..111 | 587 | 100 | Plus |
Acp65Aa-PA | 105 | CG10297-PA | 5..104 | 8..109 | 293 | 52.4 | Plus |
Lcp65Ac-PA | 109 | CG6956-PA | 3..104 | 7..110 | 289 | 55.8 | Plus |
Cpr65Aw-PA | 117 | CG32404-PA | 11..104 | 16..109 | 287 | 54.3 | Plus |
Cpr65Ax1-PA | 102 | CG34270-PA | 4..97 | 10..109 | 268 | 54 | Plus |