Clone Sequence Records
BS14191.3prime Sequence
626 bp (528 high quality bases) assembled on 2006-10-13
> BS14191.3prime
ATGGTCTAGAAAGCTTTTACAAACGACGACGGAAGATGGAAGTGGGCAGG
TAAGCGTTCTCAGGGATCTGAGCATTAGCCTTCTGGACGGGACCAGCGGA
GGCGAAGTTCAGGGCGGGTGCCACACCACCGTTGTGGGCCTGAGAGGATC
CTCCCAATTGGTCGTACTGCGACTGGATGGCGCGCTGGGCGTTGGCAGCA
TCCTCGGGAGTGCGGTACTTGACGAAGTGCACCTCGGGCTTGTTGTTATT
GTTGTTGCGGATGGCGTTCAGTTTCTGGGCAAGATCTCCAATATCGGCCT
GCTTGTTCAGGACATAGATGGCGGTCTCCTGCTGGGCAGCCTGCTTGGCG
AGGGCTAGGGCAGCGTTCTCCAGACCACGGTTCTCGGGTCCCTTGATGAA
GACAACGCGCAGTCCCTTGTTTACGGATCCAGCAACACGCTCCAGTTCTT
GTGGCTCATCGAAGTCCTGCTCGTTGGCGGAGTAGGTGAAGAACTCCTTC
TGGAGCTCAGCAGCGGGAGCGGGGGCGTTGTAGGAGACTGGAGCGGCCAG
AGCGTCGCCACCTCCTAGACCACCGAGTCCACCAAGACCGCCAAGACCGG
AATCAATAAAGCCACCACCGATGGGA
BS14191.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6447-PB | 840 | CG6447-RB | 233..840 | 624..17 | 3015 | 99.8 | Minus |
| CG6447-PA | 858 | CG6447-RA | 251..858 | 624..17 | 3015 | 99.8 | Minus |
| CG6478-PA | 861 | CG6478-RA | 251..702 | 624..173 | 2085 | 98.4 | Minus |
| CG5468-PA | 867 | CG5468-RA | 475..714 | 412..173 | 950 | 95.8 | Minus |
| CG5476-PA | 930 | CG5476-RA | 511..682 | 427..256 | 710 | 96.5 | Minus |
| CG5471-PA | 924 | CG5471-RA | 514..678 | 349..185 | 625 | 95.1 | Minus |
| CG5476-PA | 930 | CG5476-RA | 691..800 | 247..138 | 550 | 100 | Minus |
| CG6452-PA | 690 | CG6452-RA | 250..405 | 427..272 | 430 | 91 | Minus |
| CG6460-PA | 744 | CG6460-RA | 484..570 | 271..185 | 385 | 97.7 | Minus |
| CG6478-PA | 861 | CG6478-RA | 745..836 | 130..39 | 285 | 92.3 | Minus |
| CG5476-PA | 930 | CG5476-RA | 400..485 | 538..453 | 280 | 93 | Minus |
| CG6460-PA | 744 | CG6460-RA | 406..464 | 349..291 | 270 | 98.3 | Minus |
| CG6452-PA | 690 | CG6452-RA | 442..515 | 235..162 | 245 | 93.2 | Minus |
| CG31080-PA | 726 | CG31080-RA | 391..458 | 349..282 | 240 | 94.1 | Minus |
| CG5468-PA | 867 | CG5468-RA | 386..434 | 501..453 | 195 | 95.9 | Minus |
| CG5471-PA | 924 | CG5471-RA | 442..495 | 421..368 | 195 | 94.4 | Minus |
| CG31080-PA | 726 | CG31080-RA | 478..530 | 262..210 | 190 | 94.3 | Minus |
| CG6460-PA | 744 | CG6460-RA | 334..387 | 421..368 | 170 | 92.5 | Minus |
| CG14243-PA | 771 | CG14243-RA | 505..542 | 235..198 | 165 | 97.3 | Minus |
| CG5480-PA | 852 | CG5480-RA | 418..460 | 349..307 | 165 | 95.3 | Minus |
| CG14250-PA | 738 | CG14250-RA | 486..530 | 242..198 | 150 | 93.3 | Minus |
| CG31080-PA | 726 | CG31080-RA | 338..380 | 402..360 | 140 | 93 | Minus |
| CG14243-PA | 771 | CG14243-RA | 391..428 | 349..312 | 140 | 94.7 | Minus |
| CG14240-PA | 663 | CG14240-RA | 424..456 | 247..215 | 140 | 96.9 | Minus |
| CG5468-PA | 867 | CG5468-RA | 745..791 | 142..96 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlL-RA | 1002 | CG6447-RA | 301..909 | 624..16 | 3030 | 99.8 | Minus |
| TwdlL-RB | 1066 | CG6447-RB | 365..973 | 624..16 | 3030 | 99.8 | Minus |
| TwdlB-RA | 1025 | CG6478-RA | 298..897 | 624..25 | 2610 | 95.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26624680..26625288 | 16..624 | 3030 | 99.8 | Plus |
| 3R | 32079331 | 3R | 26622579..26623178 | 25..624 | 2610 | 95.7 | Plus |
| 3R | 32079331 | 3R | 26632323..26632824 | 545..44 | 1775 | 90.2 | Minus |
| 3R | 32079331 | 3R | 26619592..26620103 | 538..27 | 1540 | 86.7 | Minus |
| 3R | 32079331 | 3R | 26630220..26630621 | 499..98 | 1080 | 84.6 | Minus |
| 3R | 32079331 | 3R | 26628051..26628458 | 98..505 | 1065 | 84.1 | Plus |
| 3R | 32079331 | 3R | 26626108..26626448 | 87..427 | 880 | 83.9 | Plus |
| 3R | 32079331 | 3R | 26634088..26634494 | 508..102 | 865 | 80.8 | Minus |
| 3R | 32079331 | 3R | 26620774..26621063 | 120..409 | 460 | 77.2 | Plus |
| 3R | 32079331 | 3R | 26640530..26640724 | 349..155 | 315 | 77.4 | Minus |
| 3R | 32079331 | 3R | 26656956..26657058 | 400..298 | 275 | 84.5 | Minus |
| 3R | 32079331 | 3R | 26692842..26692886 | 198..242 | 180 | 93.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:21:16 has no hits.
BS14191.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:55 Download gff for
BS14191.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6447-PB | 232..840 | 17..625 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:58 Download gff for
BS14191.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RB | 364..980 | 7..625 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:34 Download gff for
BS14191.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RB | 364..980 | 7..625 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:34 Download gff for
BS14191.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26624673..26625288 | 7..625 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:58 Download gff for
BS14191.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22450395..22451010 | 7..625 | 99 | | Plus |
BS14191.5prime Sequence
667 bp (529 high quality bases) assembled on 2006-10-13
> BS14191.5prime
GAAGTTATCAGTCGACATGTGCCTGGTGGCAGTCGCCTGCGCCGATAAGC
TCGGCTACAACTACCAGCCCGTGGGACACTCCAGCTCCGGACTGTCCTTT
GCTCCTGGAAGTGGCAGCATTGGAGGTGGATCCATTGGAGGTGGTTCGAT
TGGAGGAGGCTCCATTGGAGGAGGATCCATTGGAGGAGGCCTCATTGGTG
GTGGCTCTATCGGAGGCGGTTCCATTGGAGGTGGTTCCCTTGGTGGTTCC
ATCGGTGGTGGCTCTATTGATTCCGGTCTTGGCGGTCTTGGTGGACTCGG
TGGTCTAGGAGGTGGCGACGCTCTGGCCGCTCCAGTCTCCTACAACGCCC
CCGCTCCCGCTGCTGAGCTCCAGAAGGAGTTCTTCACCTACTCCGCCAAC
GAGCAGGACTTCGATGAGCCACAAGAACTGGAGCGTGTTGCTGGATCCGT
AAACAAGGGACTGCGCGTTGTCTTCATCAAGGGACCCGAGAACCGTGGTC
TGGAGAACGCTGCCCTAGCCCTCGCCAAGCAGGCTGCCCAGCAGGAGACC
GCCATCTATGTCCTGAACAAGCANGCCGATATTGGAGATCTTGCCCAGAA
ACTGAACGCCATCCGCAACAACAATAACAAAAGCCCGAGGTGCACTTTCC
GTCAAGTACCGCACTCC
BS14191.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6447-PB | 840 | CG6447-RB | 1..614 | 17..630 | 3051 | 99.8 | Plus |
| CG6447-PA | 858 | CG6447-RA | 19..632 | 17..630 | 3051 | 99.8 | Plus |
| CG6478-PA | 861 | CG6478-RA | 229..632 | 227..630 | 1826 | 98 | Plus |
| CG5476-PA | 930 | CG5476-RA | 511..682 | 446..617 | 691 | 95.9 | Plus |
| CG5468-PA | 867 | CG5468-RA | 475..644 | 461..630 | 606 | 94.1 | Plus |
| CG5468-PA | 867 | CG5468-RA | 19..143 | 17..141 | 550 | 97.6 | Plus |
| CG6452-PA | 690 | CG6452-RA | 250..405 | 446..601 | 411 | 90.3 | Plus |
| CG6478-PA | 861 | CG6478-RA | 26..110 | 24..108 | 325 | 95.2 | Plus |
| CG5471-PA | 924 | CG5471-RA | 514..620 | 524..630 | 316 | 91.5 | Plus |
| CG5476-PA | 930 | CG5476-RA | 400..485 | 335..420 | 280 | 93 | Plus |
| CG5476-PA | 930 | CG5476-RA | 20..110 | 18..108 | 255 | 91.2 | Plus |
| CG6460-PA | 744 | CG6460-RA | 406..464 | 524..582 | 251 | 96.6 | Plus |
| CG6478-PA | 861 | CG6478-RA | 127..218 | 125..216 | 235 | 90.2 | Plus |
| CG31080-PA | 726 | CG31080-RA | 391..458 | 524..591 | 221 | 92.6 | Plus |
| CG5468-PA | 867 | CG5468-RA | 386..434 | 372..420 | 195 | 95.9 | Plus |
| CG5471-PA | 924 | CG5471-RA | 442..495 | 452..505 | 195 | 94.4 | Plus |
| CG6460-PA | 744 | CG6460-RA | 334..387 | 452..505 | 170 | 92.5 | Plus |
| CG5480-PA | 852 | CG5480-RA | 418..460 | 524..566 | 165 | 95.3 | Plus |
| CG31080-PA | 726 | CG31080-RA | 338..380 | 471..513 | 140 | 93 | Plus |
| CG14243-PA | 771 | CG14243-RA | 391..428 | 524..561 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlL-RA | 1002 | CG6447-RA | 69..718 | 17..667 | 3184 | 99.4 | Plus |
| TwdlL-RB | 1066 | CG6447-RB | 133..782 | 17..667 | 3184 | 99.4 | Plus |
| TwdlB-RA | 1025 | CG6478-RA | 73..715 | 24..667 | 2654 | 94.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26624871..26625520 | 667..17 | 3134 | 99.4 | Minus |
| 3R | 32079331 | 3R | 26622761..26623403 | 667..24 | 2604 | 94.3 | Minus |
| 3R | 32079331 | 3R | 26632323..26632661 | 328..667 | 1189 | 91.2 | Plus |
| 3R | 32079331 | 3R | 26619592..26619923 | 335..667 | 1034 | 88.6 | Plus |
| 3R | 32079331 | 3R | 26630220..26630512 | 374..667 | 719 | 84.4 | Plus |
| 3R | 32079331 | 3R | 26628160..26628458 | 667..368 | 689 | 83.4 | Minus |
| 3R | 32079331 | 3R | 26619262..26619485 | 17..243 | 620 | 85.9 | Plus |
| 3R | 32079331 | 3R | 26634088..26634371 | 365..647 | 579 | 81 | Plus |
| 3R | 32079331 | 3R | 26626293..26626448 | 601..446 | 559 | 90.4 | Minus |
| 3R | 32079331 | 3R | 26631943..26632040 | 11..108 | 340 | 89.8 | Plus |
| 3R | 32079331 | 3R | 26656956..26657053 | 473..570 | 265 | 84.7 | Plus |
| 3R | 32079331 | 3R | 26620879..26621063 | 647..464 | 189 | 74.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:59:02 has no hits.
BS14191.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:55 Download gff for
BS14191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6447-PB | 1..650 | 17..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:50:56 Download gff for
BS14191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RB | 130..782 | 11..667 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:09 Download gff for
BS14191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RB | 130..782 | 11..667 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:09 Download gff for
BS14191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26624871..26625523 | 11..667 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:50:56 Download gff for
BS14191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22450593..22451245 | 11..667 | 98 | | Minus |
BS14191.complete Sequence
872 bp assembled on 2006-11-01
GenBank Submission: FJ637611
> BS14191.complete
GAAGTTATCAGTCGACATGTGCCTGGTGGCAGTCGCCTGCGCCGATAAGC
TCGGCTACAACTACCAGCCCGTGGGACACTCCAGCTCCGGACTGTCCTTT
GCTCCTGGAAGTGGCAGCATTGGAGGTGGATCCATTGGAGGTGGTTCGAT
TGGAGGAGGCTCCATTGGAGGAGGATCCATTGGAGGAGGCCTCATTGGTG
GTGGCTCTATCGGAGGCGGTTCCATTGGAGGTGGTTCCCTTGGTGGTTCC
ATCGGTGGTGGCTCTATTGATTCCGGTCTTGGCGGTCTTGGTGGACTCGG
TGGTCTAGGAGGTGGCGACGCTCTGGCCGCTCCAGTCTCCTACAACGCCC
CCGCTCCCGCTGCTGAGCTCCAGAAGGAGTTCTTCACCTACTCCGCCAAC
GAGCAGGACTTCGATGAGCCACAAGAACTGGAGCGTGTTGCTGGATCCGT
AAACAAGGGACTGCGCGTTGTCTTCATCAAGGGACCCGAGAACCGTGGTC
TGGAGAACGCTGCCCTAGCCCTCGCCAAGCAGGCTGCCCAGCAGGAGACC
GCCATCTATGTCCTGAACAAGCAGGCCGATATTGGAGATCTTGCCCAGAA
ACTGAACGCCATCCGCAACAACAATAACAACAAGCCCGAGGTGCACTTCG
TCAAGTACCGCACTCCCGAGGATGCTGCCAACGCCCAGCGCGCCATCCAG
TCGCAGTACGACCAATTGGGAGGATCCTCTCAGGCCCACAACGGTGGTGT
GGCACCCGCCCTGAACTTCGCCTCCGCTGGTCCCGTCCAGAAGGCTAATG
CTCAGATCCCTGAGAACGCTTACCTGCCCACTTCCATCTTCCGTCGTCGT
TTGTAAAAGCTTTCTAGACCAT
BS14191.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlL-RA | 858 | CG6447-PA | 19..858 | 17..856 | 4200 | 100 | Plus |
| TwdlL-RB | 840 | CG6447-PB | 1..840 | 17..856 | 4200 | 100 | Plus |
| TwdlB-RA | 861 | CG6478-PA | 26..850 | 24..848 | 3345 | 93.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlL-RA | 1002 | CG6447-RA | 69..909 | 17..857 | 4205 | 100 | Plus |
| TwdlL-RB | 1066 | CG6447-RB | 133..973 | 17..857 | 4205 | 100 | Plus |
| TwdlB-RA | 1025 | CG6478-RA | 73..897 | 24..848 | 3345 | 93.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26624680..26625520 | 857..17 | 4205 | 100 | Minus |
| 3R | 32079331 | 3R | 26622579..26623403 | 848..24 | 3345 | 93.7 | Minus |
| 3R | 32079331 | 3R | 26632323..26632824 | 328..829 | 1775 | 90.2 | Plus |
| 3R | 32079331 | 3R | 26619592..26620103 | 335..846 | 1540 | 86.7 | Plus |
| 3R | 32079331 | 3R | 26630220..26630621 | 374..775 | 1080 | 84.6 | Plus |
| 3R | 32079331 | 3R | 26628051..26628458 | 775..368 | 1065 | 84.1 | Minus |
| 3R | 32079331 | 3R | 26626108..26626448 | 786..446 | 880 | 83.9 | Minus |
| 3R | 32079331 | 3R | 26634088..26634494 | 365..771 | 865 | 80.8 | Plus |
| 3R | 32079331 | 3R | 26619262..26619485 | 17..243 | 620 | 85.9 | Plus |
| 3R | 32079331 | 3R | 26620774..26621063 | 753..464 | 460 | 77.2 | Minus |
| 3R | 32079331 | 3R | 26631943..26632040 | 11..108 | 340 | 89.8 | Plus |
| 3R | 32079331 | 3R | 26640530..26640724 | 524..718 | 315 | 77.4 | Plus |
| 3R | 32079331 | 3R | 26656956..26657058 | 473..575 | 275 | 84.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:45:11 has no hits.
BS14191.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:38 Download gff for
BS14191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RA | 11..858 | 8..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:53 Download gff for
BS14191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RA | 61..916 | 8..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:57 Download gff for
BS14191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RB | 133..970 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:38 Download gff for
BS14191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RA | 61..916 | 8..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:10 Download gff for
BS14191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RB | 133..970 | 17..854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:10 Download gff for
BS14191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26624683..26625520 | 17..854 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:57 Download gff for
BS14191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22450405..22451242 | 17..854 | 100 | | Minus |
BS14191.pep Sequence
Translation from 16 to 855
> BS14191.pep
MCLVAVACADKLGYNYQPVGHSSSGLSFAPGSGSIGGGSIGGGSIGGGSI
GGGSIGGGLIGGGSIGGGSIGGGSLGGSIGGGSIDSGLGGLGGLGGLGGG
DALAAPVSYNAPAPAAELQKEFFTYSANEQDFDEPQELERVAGSVNKGLR
VVFIKGPENRGLENAALALAKQAAQQETAIYVLNKQADIGDLAQKLNAIR
NNNNNKPEVHFVKYRTPEDAANAQRAIQSQYDQLGGSSQAHNGGVAPALN
FASAGPVQKANAQIPENAYLPTSIFRRRL*
BS14191.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlL-PB | 279 | CG6447-PB | 1..279 | 1..279 | 1431 | 100 | Plus |
| TwdlL-PA | 285 | CG6447-PA | 7..285 | 1..279 | 1431 | 100 | Plus |
| TwdlB-PA | 286 | CG6478-PA | 7..283 | 1..277 | 1396 | 97.5 | Plus |
| TwdlM-PA | 288 | CG5468-PA | 7..287 | 1..277 | 1221 | 84.4 | Plus |
| TwdlN-PA | 309 | CG5476-PA | 7..304 | 1..277 | 1066 | 74.6 | Plus |
