Clone Sequence Records
BS14202.3prime Sequence
609 bp (589 high quality bases) assembled on 2006-10-13
> BS14202.3prime
ATGGTCTAGAAAGCTTCTAATAGCGGAAGAAGTTGCCGTCGGAGGTCTGG
CGCGAGAATCCATTGTTCACCAGCTGGTTGTGGACACCGCTGCAAATGAG
CTTCACGCTGTGCGGATGAATCTTTTCCTTACAACCGCCTATGCGAAGTG
GATGACCCAATACGTCCTCCTGCTTGCGCCGAATGAAGCGCGTGTTGCGC
AACACCCGAAATGATTTGAGTTGGGAACCAATTTCCTTGGCCGCCCCAGG
AGCTGACCAGCTACTTATGGCGCGGCACGTCTCCCTCTGCATCACGTAGT
CCACCTTGTCCGGAAATGCTTCGCGGGTGTGATCGTAGCGCGACTGCAGC
GAAAAGTCCAGCGTATCCTTCGGGATGTTCGGATTGGCACGGTACCGCTT
GCTCGAGCGCACCGAGTTCATCGTTTGATGATAGAAGAGCCGCTGATACG
GCTCCAGATGGCCATGCCAGGTGCCCGGTTTCAGATGGGCCTCCGGCAGC
GGGGGCTCTGGAAAAGAGCACACATAGGTGCCCTCCGTATGCAGTTCCGG
CTGCCATGAAACATTCTTGATCTGCACAGTATCGTACTGAATCATGTCGA
CTGATAACT
BS14202.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5435-PA | 579 | CG5435-RA | 1..579 | 595..17 | 2820 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:58:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5435-RB | 929 | CG5435-RB | 106..684 | 595..17 | 2850 | 99.5 | Minus |
CG5435-RA | 903 | CG5435-RA | 80..658 | 595..17 | 2850 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12430277..12430694 | 138..555 | 2090 | 100 | Plus |
2L | 23513712 | 2L | 12430072..12430195 | 17..140 | 590 | 98.4 | Plus |
2L | 23513712 | 2L | 12430746..12430787 | 554..595 | 195 | 97.6 | Plus |
Blast to na_te.dros performed on 2015-01-30 12:58:07 has no hits.
BS14202.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:58 Download gff for
BS14202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-PA | 1..579 | 17..595 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:45:06 Download gff for
BS14202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 80..658 | 17..595 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:08:44 Download gff for
BS14202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 80..658 | 17..595 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:08:44 Download gff for
BS14202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12430747..12430787 | 555..595 | 97 | | Plus |
2L | 12430072..12430193 | 17..138 | 98 | <- | Plus |
2L | 12430278..12430693 | 139..554 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:45:06 Download gff for
BS14202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12430072..12430193 | 17..138 | 98 | <- | Plus |
arm_2L | 12430278..12430693 | 139..554 | 100 | <- | Plus |
arm_2L | 12430747..12430787 | 555..595 | 97 | | Plus |
BS14202.5prime Sequence
609 bp (592 high quality bases) assembled on 2006-10-13
> BS14202.5prime
GAAGTTATCAGTCGACATGATTCAGTACGATACTGTGCAGATCAAGAATG
TATCATGGCAGCCGGAACTGCATACGGAGGGCACCTATGTGTGCTCTTTT
CCAGAGCCCCCGCTGCCGGAGGCCCATCTGAAACCGGGCACCTGGCATGG
CCATCTGGAGCCGTATCAGCGGCTCTTCTATCATCAAACGATGAACTCGG
TGCGCTCGAGCAAGCGGTACCGTGCCAATCCGAACATCCCGAAGGATACG
CTGGACTTTTCGCTGCAGTCGCGCTACGATCACACCCGCGAAGCATTTCC
GGACAAGGTGGACTACGTGATGCAGAGGGAGACGTGCCGCGCCATAAGTA
GCTGGTCAGCTCCTGGGGCGGCCAAGGAAATTGGTTCCCAACTCAAATCA
TTTCGGGTGTTGCGCAACACGCGCTTCATTCGGCGCAAGCAGGAGGACGT
ATTGGGTCATCCACTTCGCATAGGCGGTTGTAAGGAAAAGATTCATCCGC
ACAGCGTGAAGCTCATTTGCAGCGGTGTCCCCAACCAGCTGGTGAACAAT
GGATTCTCGCGCCAGACCTCCGACGGCAACTTCTTCCGCTATTAGAAGCT
TTCTAGACC
BS14202.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5435-PA | 579 | CG5435-RA | 1..579 | 17..595 | 2820 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5435-RB | 929 | CG5435-RB | 106..684 | 17..595 | 2850 | 99.5 | Plus |
CG5435-RA | 903 | CG5435-RA | 80..658 | 17..595 | 2850 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12430277..12430694 | 474..57 | 2090 | 100 | Minus |
2L | 23513712 | 2L | 12430072..12430195 | 595..472 | 575 | 97.6 | Minus |
2L | 23513712 | 2L | 12430746..12430787 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:50:24 has no hits.
BS14202.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:59 Download gff for
BS14202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-PA | 1..579 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:07:51 Download gff for
BS14202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 80..658 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:17 Download gff for
BS14202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 80..658 | 17..595 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:17 Download gff for
BS14202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12430072..12430193 | 474..595 | 97 | <- | Minus |
2L | 12430278..12430693 | 58..473 | 100 | <- | Minus |
2L | 12430747..12430787 | 17..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:07:51 Download gff for
BS14202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12430072..12430193 | 474..595 | 97 | <- | Minus |
arm_2L | 12430278..12430693 | 58..473 | 100 | <- | Minus |
arm_2L | 12430747..12430787 | 17..57 | 100 | | Minus |
BS14202.complete Sequence
611 bp assembled on 2006-11-01
GenBank Submission: FJ637612
> BS14202.complete
GAAGTTATCAGTCGACATGATTCAGTACGATACTGTGCAGATCAAGAATG
TATCATGGCAGCCGGAACTGCATACGGAGGGCACCTATGTGTGCTCTTTT
CCAGAGCCCCCGCTGCCGGAGGCCCATCTGAAACCGGGCACCTGGCATGG
CCATCTGGAGCCGTATCAGCGGCTCTTCTATCATCAAACGATGAACTCGG
TGCGCTCGAGCAAGCGGTACCGTGCCAATCCGAACATCCCGAAGGATACG
CTGGACTTTTCGCTGCAGTCGCGCTACGATCACACCCGCGAAGCATTTCC
GGACAAGGTGGACTACGTGATGCAGAGGGAGACGTGCCGCGCCATAAGTA
GCTGGTCAGCTCCTGGGGCGGCCAAGGAAATTGGTTCCCAACTCAAATCA
TTTCGGGTGTTGCGCAACACGCGCTTCATTCGGCGCAAGCAGGAGGACGT
ATTGGGTCATCCACTTCGCATAGGCGGTTGTAAGGAAAAGATTCATCCGC
ACAGCGTGAAGCTCATTTGCAGCGGTGTCCACAACCAGCTGGTGAACAAT
GGATTCTCGCGCCAGACCTCCGACGGCAACTTCTTCCGCTATTAGAAGCT
TTCTAGACCAT
BS14202.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5435-RB | 579 | CG5435-PB | 1..579 | 17..595 | 2865 | 99.7 | Plus |
CG5435-RA | 579 | CG5435-PA | 1..579 | 17..595 | 2865 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5435-RB | 929 | CG5435-RB | 106..684 | 17..595 | 2865 | 99.7 | Plus |
CG5435-RA | 903 | CG5435-RA | 80..658 | 17..595 | 2865 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12430277..12430694 | 474..57 | 2090 | 100 | Minus |
2L | 23513712 | 2L | 12430072..12430195 | 595..472 | 590 | 98.4 | Minus |
2L | 23513712 | 2L | 12430746..12430787 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:09:18 has no hits.
BS14202.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:39 Download gff for
BS14202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 1..579 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:54 Download gff for
BS14202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 107..685 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:05 Download gff for
BS14202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 80..658 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:40 Download gff for
BS14202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 107..685 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:02 Download gff for
BS14202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 80..658 | 17..595 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:02 Download gff for
BS14202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12430072..12430193 | 474..595 | 98 | <- | Minus |
2L | 12430278..12430693 | 58..473 | 100 | <- | Minus |
2L | 12430747..12430787 | 17..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:05 Download gff for
BS14202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12430072..12430193 | 474..595 | 98 | <- | Minus |
arm_2L | 12430278..12430693 | 58..473 | 100 | <- | Minus |
arm_2L | 12430747..12430787 | 17..57 | 100 | | Minus |
BS14202.pep Sequence
Translation from 16 to 594
> BS14202.pep
MIQYDTVQIKNVSWQPELHTEGTYVCSFPEPPLPEAHLKPGTWHGHLEPY
QRLFYHQTMNSVRSSKRYRANPNIPKDTLDFSLQSRYDHTREAFPDKVDY
VMQRETCRAISSWSAPGAAKEIGSQLKSFRVLRNTRFIRRKQEDVLGHPL
RIGGCKEKIHPHSVKLICSGVHNQLVNNGFSRQTSDGNFFRY*
BS14202.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5435-PB | 192 | CG5435-PB | 1..192 | 1..192 | 1047 | 100 | Plus |
CG5435-PA | 192 | CG5435-PA | 1..192 | 1..192 | 1047 | 100 | Plus |