Clone BS14202 Report

Search the DGRC for BS14202

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG5435-RA
Protein status:BS14202.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14202.3prime Sequence

609 bp (589 high quality bases) assembled on 2006-10-13

> BS14202.3prime
ATGGTCTAGAAAGCTTCTAATAGCGGAAGAAGTTGCCGTCGGAGGTCTGG
CGCGAGAATCCATTGTTCACCAGCTGGTTGTGGACACCGCTGCAAATGAG
CTTCACGCTGTGCGGATGAATCTTTTCCTTACAACCGCCTATGCGAAGTG
GATGACCCAATACGTCCTCCTGCTTGCGCCGAATGAAGCGCGTGTTGCGC
AACACCCGAAATGATTTGAGTTGGGAACCAATTTCCTTGGCCGCCCCAGG
AGCTGACCAGCTACTTATGGCGCGGCACGTCTCCCTCTGCATCACGTAGT
CCACCTTGTCCGGAAATGCTTCGCGGGTGTGATCGTAGCGCGACTGCAGC
GAAAAGTCCAGCGTATCCTTCGGGATGTTCGGATTGGCACGGTACCGCTT
GCTCGAGCGCACCGAGTTCATCGTTTGATGATAGAAGAGCCGCTGATACG
GCTCCAGATGGCCATGCCAGGTGCCCGGTTTCAGATGGGCCTCCGGCAGC
GGGGGCTCTGGAAAAGAGCACACATAGGTGCCCTCCGTATGCAGTTCCGG
CTGCCATGAAACATTCTTGATCTGCACAGTATCGTACTGAATCATGTCGA
CTGATAACT

BS14202.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-PA 579 CG5435-RA 1..579 595..17 2820 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-RB 929 CG5435-RB 106..684 595..17 2850 99.5 Minus
CG5435-RA 903 CG5435-RA 80..658 595..17 2850 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12430277..12430694 138..555 2090 100 Plus
2L 23513712 2L 12430072..12430195 17..140 590 98.4 Plus
2L 23513712 2L 12430746..12430787 554..595 195 97.6 Plus
Blast to na_te.dros performed on 2015-01-30 12:58:07 has no hits.

BS14202.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:58 Download gff for BS14202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5435-PA 1..579 17..595 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:45:06 Download gff for BS14202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 80..658 17..595 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:08:44 Download gff for BS14202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 80..658 17..595 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:08:44 Download gff for BS14202.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12430747..12430787 555..595 97   Plus
2L 12430072..12430193 17..138 98 <- Plus
2L 12430278..12430693 139..554 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:45:06 Download gff for BS14202.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12430072..12430193 17..138 98 <- Plus
arm_2L 12430278..12430693 139..554 100 <- Plus
arm_2L 12430747..12430787 555..595 97   Plus

BS14202.5prime Sequence

609 bp (592 high quality bases) assembled on 2006-10-13

> BS14202.5prime
GAAGTTATCAGTCGACATGATTCAGTACGATACTGTGCAGATCAAGAATG
TATCATGGCAGCCGGAACTGCATACGGAGGGCACCTATGTGTGCTCTTTT
CCAGAGCCCCCGCTGCCGGAGGCCCATCTGAAACCGGGCACCTGGCATGG
CCATCTGGAGCCGTATCAGCGGCTCTTCTATCATCAAACGATGAACTCGG
TGCGCTCGAGCAAGCGGTACCGTGCCAATCCGAACATCCCGAAGGATACG
CTGGACTTTTCGCTGCAGTCGCGCTACGATCACACCCGCGAAGCATTTCC
GGACAAGGTGGACTACGTGATGCAGAGGGAGACGTGCCGCGCCATAAGTA
GCTGGTCAGCTCCTGGGGCGGCCAAGGAAATTGGTTCCCAACTCAAATCA
TTTCGGGTGTTGCGCAACACGCGCTTCATTCGGCGCAAGCAGGAGGACGT
ATTGGGTCATCCACTTCGCATAGGCGGTTGTAAGGAAAAGATTCATCCGC
ACAGCGTGAAGCTCATTTGCAGCGGTGTCCCCAACCAGCTGGTGAACAAT
GGATTCTCGCGCCAGACCTCCGACGGCAACTTCTTCCGCTATTAGAAGCT
TTCTAGACC

BS14202.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-PA 579 CG5435-RA 1..579 17..595 2820 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-RB 929 CG5435-RB 106..684 17..595 2850 99.5 Plus
CG5435-RA 903 CG5435-RA 80..658 17..595 2850 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12430277..12430694 474..57 2090 100 Minus
2L 23513712 2L 12430072..12430195 595..472 575 97.6 Minus
2L 23513712 2L 12430746..12430787 58..17 210 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:50:24 has no hits.

BS14202.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:59 Download gff for BS14202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5435-PA 1..579 17..595 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:07:51 Download gff for BS14202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 80..658 17..595 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:17 Download gff for BS14202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 80..658 17..595 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:17 Download gff for BS14202.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12430072..12430193 474..595 97 <- Minus
2L 12430278..12430693 58..473 100 <- Minus
2L 12430747..12430787 17..57 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:07:51 Download gff for BS14202.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12430072..12430193 474..595 97 <- Minus
arm_2L 12430278..12430693 58..473 100 <- Minus
arm_2L 12430747..12430787 17..57 100   Minus

BS14202.complete Sequence

611 bp assembled on 2006-11-01

GenBank Submission: FJ637612

> BS14202.complete
GAAGTTATCAGTCGACATGATTCAGTACGATACTGTGCAGATCAAGAATG
TATCATGGCAGCCGGAACTGCATACGGAGGGCACCTATGTGTGCTCTTTT
CCAGAGCCCCCGCTGCCGGAGGCCCATCTGAAACCGGGCACCTGGCATGG
CCATCTGGAGCCGTATCAGCGGCTCTTCTATCATCAAACGATGAACTCGG
TGCGCTCGAGCAAGCGGTACCGTGCCAATCCGAACATCCCGAAGGATACG
CTGGACTTTTCGCTGCAGTCGCGCTACGATCACACCCGCGAAGCATTTCC
GGACAAGGTGGACTACGTGATGCAGAGGGAGACGTGCCGCGCCATAAGTA
GCTGGTCAGCTCCTGGGGCGGCCAAGGAAATTGGTTCCCAACTCAAATCA
TTTCGGGTGTTGCGCAACACGCGCTTCATTCGGCGCAAGCAGGAGGACGT
ATTGGGTCATCCACTTCGCATAGGCGGTTGTAAGGAAAAGATTCATCCGC
ACAGCGTGAAGCTCATTTGCAGCGGTGTCCACAACCAGCTGGTGAACAAT
GGATTCTCGCGCCAGACCTCCGACGGCAACTTCTTCCGCTATTAGAAGCT
TTCTAGACCAT

BS14202.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-RB 579 CG5435-PB 1..579 17..595 2865 99.7 Plus
CG5435-RA 579 CG5435-PA 1..579 17..595 2865 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-RB 929 CG5435-RB 106..684 17..595 2865 99.7 Plus
CG5435-RA 903 CG5435-RA 80..658 17..595 2865 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12430277..12430694 474..57 2090 100 Minus
2L 23513712 2L 12430072..12430195 595..472 590 98.4 Minus
2L 23513712 2L 12430746..12430787 58..17 210 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:09:18 has no hits.

BS14202.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:39 Download gff for BS14202.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 1..579 17..595 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:54 Download gff for BS14202.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 107..685 17..595 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:05 Download gff for BS14202.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 80..658 17..595 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:40 Download gff for BS14202.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 107..685 17..595 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:02 Download gff for BS14202.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 80..658 17..595 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:02 Download gff for BS14202.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12430072..12430193 474..595 98 <- Minus
2L 12430278..12430693 58..473 100 <- Minus
2L 12430747..12430787 17..57 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:05 Download gff for BS14202.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12430072..12430193 474..595 98 <- Minus
arm_2L 12430278..12430693 58..473 100 <- Minus
arm_2L 12430747..12430787 17..57 100   Minus

BS14202.pep Sequence

Translation from 16 to 594

> BS14202.pep
MIQYDTVQIKNVSWQPELHTEGTYVCSFPEPPLPEAHLKPGTWHGHLEPY
QRLFYHQTMNSVRSSKRYRANPNIPKDTLDFSLQSRYDHTREAFPDKVDY
VMQRETCRAISSWSAPGAAKEIGSQLKSFRVLRNTRFIRRKQEDVLGHPL
RIGGCKEKIHPHSVKLICSGVHNQLVNNGFSRQTSDGNFFRY*

BS14202.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-PB 192 CG5435-PB 1..192 1..192 1047 100 Plus
CG5435-PA 192 CG5435-PA 1..192 1..192 1047 100 Plus