Clone BS14203 Report

Search the DGRC for BS14203

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG32022-RA
Protein status:BS14203.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14203.3prime Sequence

567 bp (567 high quality bases) assembled on 2006-10-13

> BS14203.3prime
ATGGTCTAGAAAGCTTTCACGCCCCACGATTTTTCACAAAGCCGTAGATG
AGTCGAAATGTCAGGTTGCAGGAGAATGCCCAGGCGGGCACCGAAATGGC
ATTGGCCACGCCAGTAGGAAAACTAAGAAGTCCTGTGAACGGAGCCAGGC
TGATCGCTTCATCGATGATCATGACGGGCGTTCCACGATTCCGGATGCTG
ATAAACACGGTTATTGCTGAGAGCAGCACCTTAGATCCGTAGAACATGGC
CGTATCGATGCTTATCCGCATGAAGTTCTCCATTCCCCGGGCAGATTTCA
GTTTCGCCTCCGCCTCTGATACTTTACGCTCGGCGCGCATAATTTTGATG
GTCCTGGCGTACTCTCCGGAATGCTCCGCATTGCTGACCACCTCCACTTG
CTTCCGGGCATCGTCCAGTTCTGTCTGCAACTGCCGAATTTCCGCGGAGT
TCCTTACGCCCCACAACCGCGACACTTTGAGGTAGTTCCTTATGAAATCT
GGCAGGATTGTGTTCAGCAGGCTGAGCAGGGCGATGAGGGCAAACAGTGT
CATGTCGACTGATAACT

BS14203.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG32022-PA 537 CG32022-RA 1..537 553..17 2685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG32022-RB 938 CG32022-RB 240..777 554..17 2690 100 Minus
CG32022-RA 792 CG32022-RA 94..631 554..17 2690 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8720441..8720905 17..481 2325 100 Plus
3L 28110227 3L 8720961..8721033 482..554 365 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:46:31 has no hits.

BS14203.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:59 Download gff for BS14203.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32022-PA 1..537 17..553 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:28 Download gff for BS14203.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32022-RA 88..631 17..561 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:48 Download gff for BS14203.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32022-RA 88..631 17..561 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:48 Download gff for BS14203.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8720441..8720905 17..481 100 <- Plus
3L 8720961..8721039 482..561 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:28 Download gff for BS14203.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8713541..8714005 17..481 100 <- Plus
arm_3L 8714061..8714139 482..561 95   Plus

BS14203.5prime Sequence

567 bp (567 high quality bases) assembled on 2006-10-13

> BS14203.5prime
GAAGTTATCAGTCGACATGACACTGTTTGCCCTCATCGCCCTGCTCAGCC
TGCTGAACACAATCCTGCCAGATTTCATAAGGAACTACCTCAAAGTGTCG
CGGTTGTGGGGCGTAAGGAACTCCGCGGAAATTCGGCAGTTGCAGACAGA
ACTGGACGATGCCCGGAAGCAAGTGGAGGTGGTCAGCAATGCGGAGCATT
CCGGAGAGTACGCCAGGACCATCAAAATTATGCGCGCCGAGCGTAAAGTA
TCAGAGGCGGAGGCGAAACTGAAATCTGCCCGGGGAATGGAGAACTTCAT
GCGGATAAGCATCGATACGGCCATGTTCTACGGATCTAAGGTGCTGCTCT
CAGCAATAACCGTGTTTATCAGCATCCGGAATCGTGGAACGCCCGTCATG
ATCATCGATGAAGCGATCAGCCTGGCTCCGTTCACAGGACTTCTTAGTTT
TCCTACTGGCGTGGCCAATGCCATTTCGGTGCCCGCCTGGGCATTCTCCT
GCAACCTGACATTTCGACTCATCTACGGCTTTGTGAAAAATCGTGGGGCG
TGAAAGCTTTCTAGACC

BS14203.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG32022-PA 537 CG32022-RA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG32022-RB 938 CG32022-RB 240..777 16..553 2690 100 Plus
CG32022-RA 792 CG32022-RA 94..631 16..553 2690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8720441..8720905 553..89 2325 100 Minus
3L 28110227 3L 8720961..8721033 88..16 365 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:10:20 has no hits.

BS14203.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:48:59 Download gff for BS14203.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32022-PA 1..537 17..553 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:39:52 Download gff for BS14203.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32022-RA 88..631 9..553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:04 Download gff for BS14203.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32022-RA 88..631 9..553 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:04 Download gff for BS14203.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8720441..8720905 89..553 100 <- Minus
3L 8720961..8721039 9..88 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:39:52 Download gff for BS14203.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8713541..8714005 89..553 100 <- Minus
arm_3L 8714061..8714139 9..88 95   Minus

BS14203.complete Sequence

569 bp assembled on 2006-11-01

GenBank Submission: FJ637613

> BS14203.complete
GAAGTTATCAGTCGACATGACACTGTTTGCCCTCATCGCCCTGCTCAGCC
TGCTGAACACAATCCTGCCAGATTTCATAAGGAACTACCTCAAAGTGTCG
CGGTTGTGGGGCGTAAGGAACTCCGCGGAAATTCGGCAGTTGCAGACAGA
ACTGGACGATGCCCGGAAGCAAGTGGAGGTGGTCAGCAATGCGGAGCATT
CCGGAGAGTACGCCAGGACCATCAAAATTATGCGCGCCGAGCGTAAAGTA
TCAGAGGCGGAGGCGAAACTGAAATCTGCCCGGGGAATGGAGAACTTCAT
GCGGATAAGCATCGATACGGCCATGTTCTACGGATCTAAGGTGCTGCTCT
CAGCAATAACCGTGTTTATCAGCATCCGGAATCGTGGAACGCCCGTCATG
ATCATCGATGAAGCGATCAGCCTGGCTCCGTTCACAGGACTTCTTAGTTT
TCCTACTGGCGTGGCCAATGCCATTTCGGTGCCCGCCTGGGCATTCTCCT
GCAACCTGACATTTCGACTCATCTACGGCTTTGTGAAAAATCGTGGGGCG
TGAAAGCTTTCTAGACCAT

BS14203.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32022-RB 537 CG32022-PB 1..537 17..553 2685 100 Plus
CG32022-RA 537 CG32022-PA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG32022-RB 938 CG32022-RB 240..777 16..553 2690 100 Plus
CG32022-RA 792 CG32022-RA 94..631 16..553 2690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8720441..8720905 553..89 2325 100 Minus
3L 28110227 3L 8720961..8721033 88..16 365 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:51:08 has no hits.

BS14203.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:41 Download gff for BS14203.complete
Subject Subject Range Query Range Percent Splice Strand
CG32022-RA 1..537 17..553 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:56 Download gff for BS14203.complete
Subject Subject Range Query Range Percent Splice Strand
CG32022-RA 234..777 9..553 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:37 Download gff for BS14203.complete
Subject Subject Range Query Range Percent Splice Strand
CG32022-RA 95..630 17..552 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:41 Download gff for BS14203.complete
Subject Subject Range Query Range Percent Splice Strand
CG32022-RA 234..777 9..553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:19 Download gff for BS14203.complete
Subject Subject Range Query Range Percent Splice Strand
CG32022-RA 95..630 17..552 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:19 Download gff for BS14203.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8720442..8720905 89..552 100 <- Minus
3L 8720961..8721032 17..88 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:37 Download gff for BS14203.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8713542..8714005 89..552 100 <- Minus
arm_3L 8714061..8714132 17..88 100   Minus

BS14203.pep Sequence

Translation from 16 to 552

> BS14203.pep
MTLFALIALLSLLNTILPDFIRNYLKVSRLWGVRNSAEIRQLQTELDDAR
KQVEVVSNAEHSGEYARTIKIMRAERKVSEAEAKLKSARGMENFMRISID
TAMFYGSKVLLSAITVFISIRNRGTPVMIIDEAISLAPFTGLLSFPTGVA
NAISVPAWAFSCNLTFRLIYGFVKNRGA*

BS14203.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG32022-PB 178 CG32022-PB 1..178 1..178 879 100 Plus
CG32022-PA 178 CG32022-PA 1..178 1..178 879 100 Plus