Clone BS14205 Report

Search the DGRC for BS14205

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptRpL10Aa-RA
Protein status:BS14205.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14205.5prime Sequence

462 bp (413 high quality bases) assembled on 2006-10-13

> BS14205.5prime
GAAGTTATCAGTCGACATGGTGTCGAAAGTTTCTCGCGATACGATTTACG
TTGCAGTCAAAAATATCCTGCTGAACTCGCAGGCCAAAGGACCAGACTGC
CTGGAGACGGTGGAGCTGCAGATTGGGCTGAGGGATTATGATCCTGACAA
ATGCAAGCGGTTCCATGGAAGTGTACTATTGCATCACCTGGCGGTTCCAC
AACTAAAGGTCTGCGTCTTCGGGGATCAGGAGCACTGTTATAAGGCCAAA
GCCATAGGAGTTGATTGCCTAGATGTGGAGGCTTTGAAAAAGCTGAACAA
AGATCCCAAGTTGACAAAGAAGTTGTCCAAAGCTTACGATGTCTTCCTGG
CCTCCGAATCGATAATTAAGCAGATCCCAAGGCTACTGTGTCCTGTTCTC
ACCAATGCGGGCAAATTTCTTACTCCTTTGGCTCGTGGCGAATCTATGAG
TTCCAAAATCAA

BS14205.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3843-PA 651 RpL10Aa-RA 1..446 17..462 2180 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Aa-RA 784 CG3843-RA 58..503 17..462 2200 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15037423..15037868 17..462 2200 99.6 Plus
Blast to na_te.dros performed 2015-02-10 16:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 3745..3776 87..56 106 81.2 Minus

BS14205.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:01 Download gff for BS14205.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3843-PA 1..444 17..460 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:21 Download gff for BS14205.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 58..501 17..460 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:44 Download gff for BS14205.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 58..501 17..460 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:44 Download gff for BS14205.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15037423..15037866 17..460 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:21 Download gff for BS14205.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10863145..10863588 17..460 99   Plus

BS14205.3prime Sequence

461 bp (460 high quality bases) assembled on 2006-10-13

> BS14205.3prime
ATGGTCTAGAAAGCTTTCAATAGAGCTGATGAGGTACGCCCAACGATGAT
TTTATATGAAGTGAGCGCACATTCTGCCAGTTATCCTTCAGCAAGGACAC
TAAAAAGTTGATCGATATTGCTATGTTTCGAGCTAGTTCCTCTGGGTGCA
TGCCAACATGGCCAACATTAACGGAAAGACATTCCATCCTTTTCATATGC
TTCTTTTTGGTAGATAGTATTTTGATTTTGGAACTCATAGATTCGCCACG
AGCCAAAGGAGTAAGAAATTTGCCCGCATTGGTGAGACCAGGACCCAGTA
GCCTTGGGATCTGCTTAATTATCGATTCGGAGGCCAGGAAGACATCGTAA
GCTTTGGACAACTTCTTTGTCAACTTGGGATCTTTGTTCAGCTTTTTCAA
AGCCTCCACATCTAGGCAATCAACTCCTATGGCTTTGGCCTTATAACAGT
GCTCCTGATCC

BS14205.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3843-PA 651 RpL10Aa-RA 207..651 461..17 2225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Aa-RA 784 CG3843-RA 264..718 461..7 2245 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15037629..15038083 461..7 2245 99.6 Minus
Blast to na_te.dros performed on 2015-02-03 06:30:09 has no hits.

BS14205.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:00 Download gff for BS14205.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3843-PA 207..651 17..461 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:10 Download gff for BS14205.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 264..715 9..461 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:36:59 Download gff for BS14205.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 264..715 9..461 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:36:59 Download gff for BS14205.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15037629..15038080 9..461 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:10 Download gff for BS14205.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10863351..10863802 9..461 99   Minus

BS14205.complete Sequence

683 bp assembled on 2006-11-01

GenBank Submission: FJ637614

> BS14205.complete
GAAGTTATCAGTCGACATGGTGTCGAAAGTTTCTCGCGATACGATTTACG
TTGCAGTCAAAAATATCCTGCTGAACTCGCAGGCCAAAGGACCAGACTGC
CTGGAGACGGTGGAGCTGCAGATTGGGCTGAGGGATTATGATCCTGACAA
ATGCAAGCGGTTCCATGGAAGTGTACTATTGCATCACCTGGCGGTTCCAC
AACTAAAGGTCTGCGTCTTCGGGGATCAGGAGCACTGTTATAAGGCCAAA
GCCATAGGAGTTGATTGCCTAGATGTGGAGGCTTTGAAAAAGCTGAACAA
AGATCCCAAGTTGACAAAGAAGTTGTCCAAAGCTTACGATGTCTTCCTGG
CCTCCGAATCGATAATTAAGCAGATCCCAAGGCTACTGGGTCCTGGTCTC
ACCAATGCGGGCAAATTTCTTACTCCTTTGGCTCGTGGCGAATCTATGAG
TTCCAAAATCAAAATACTATCTACCAAAAAGAAGCATATGAAAAGGATGG
AATGTCTTTCCGTTAATGTTGGCCATGTTGGCATGCACCCAGAGGAACTA
GCTCGAAACATAGCAATATCGATCAACTTTTTAGTGTCCTTGCTGAAGGA
TAACTGGCAGAATGTGCGCTCACTTCATATAAAATCATCGTTGGGCGTAC
CTCATCAGCTCTATTGAAAGCTTTCTAGACCAT

BS14205.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Aa-RA 651 CG3843-PA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Aa-RA 784 CG3843-RA 58..718 17..677 3275 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15037423..15038083 17..677 3275 99.7 Plus
Blast to na_te.dros performed 2014-11-27 06:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 3745..3776 87..56 106 81.2 Minus

BS14205.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:21 Download gff for BS14205.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 1..651 17..667 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:40 Download gff for BS14205.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 58..715 17..675 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:15 Download gff for BS14205.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 58..707 17..666 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:21 Download gff for BS14205.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 58..715 17..675 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:30 Download gff for BS14205.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 58..707 17..666 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:30 Download gff for BS14205.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15037423..15038072 17..666 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:15 Download gff for BS14205.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10863145..10863794 17..666 100   Plus

BS14205.pep Sequence

Translation from 16 to 666

> BS14205.pep
MVSKVSRDTIYVAVKNILLNSQAKGPDCLETVELQIGLRDYDPDKCKRFH
GSVLLHHLAVPQLKVCVFGDQEHCYKAKAIGVDCLDVEALKKLNKDPKLT
KKLSKAYDVFLASESIIKQIPRLLGPGLTNAGKFLTPLARGESMSSKIKI
LSTKKKHMKRMECLSVNVGHVGMHPEELARNIAISINFLVSLLKDNWQNV
RSLHIKSSLGVPHQLY*

BS14205.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Aa-PA 216 CG3843-PA 1..216 1..216 1113 100 Plus
RpL10Ab-PA 217 CG7283-PA 1..217 1..216 676 63.6 Plus
RpL10Ab-PF 57 CG7283-PF 1..53 1..53 147 60.4 Plus