Clone Sequence Records
BS14205.5prime Sequence
462 bp (413 high quality bases) assembled on 2006-10-13
> BS14205.5prime
GAAGTTATCAGTCGACATGGTGTCGAAAGTTTCTCGCGATACGATTTACG
TTGCAGTCAAAAATATCCTGCTGAACTCGCAGGCCAAAGGACCAGACTGC
CTGGAGACGGTGGAGCTGCAGATTGGGCTGAGGGATTATGATCCTGACAA
ATGCAAGCGGTTCCATGGAAGTGTACTATTGCATCACCTGGCGGTTCCAC
AACTAAAGGTCTGCGTCTTCGGGGATCAGGAGCACTGTTATAAGGCCAAA
GCCATAGGAGTTGATTGCCTAGATGTGGAGGCTTTGAAAAAGCTGAACAA
AGATCCCAAGTTGACAAAGAAGTTGTCCAAAGCTTACGATGTCTTCCTGG
CCTCCGAATCGATAATTAAGCAGATCCCAAGGCTACTGTGTCCTGTTCTC
ACCAATGCGGGCAAATTTCTTACTCCTTTGGCTCGTGGCGAATCTATGAG
TTCCAAAATCAA
BS14205.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3843-PA | 651 | RpL10Aa-RA | 1..446 | 17..462 | 2180 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Aa-RA | 784 | CG3843-RA | 58..503 | 17..462 | 2200 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15037423..15037868 | 17..462 | 2200 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-10 16:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 3745..3776 | 87..56 | 106 | 81.2 | Minus |
BS14205.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:01 Download gff for
BS14205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3843-PA | 1..444 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:21 Download gff for
BS14205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 58..501 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:44 Download gff for
BS14205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 58..501 | 17..460 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:44 Download gff for
BS14205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15037423..15037866 | 17..460 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:21 Download gff for
BS14205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10863145..10863588 | 17..460 | 99 | | Plus |
BS14205.3prime Sequence
461 bp (460 high quality bases) assembled on 2006-10-13
> BS14205.3prime
ATGGTCTAGAAAGCTTTCAATAGAGCTGATGAGGTACGCCCAACGATGAT
TTTATATGAAGTGAGCGCACATTCTGCCAGTTATCCTTCAGCAAGGACAC
TAAAAAGTTGATCGATATTGCTATGTTTCGAGCTAGTTCCTCTGGGTGCA
TGCCAACATGGCCAACATTAACGGAAAGACATTCCATCCTTTTCATATGC
TTCTTTTTGGTAGATAGTATTTTGATTTTGGAACTCATAGATTCGCCACG
AGCCAAAGGAGTAAGAAATTTGCCCGCATTGGTGAGACCAGGACCCAGTA
GCCTTGGGATCTGCTTAATTATCGATTCGGAGGCCAGGAAGACATCGTAA
GCTTTGGACAACTTCTTTGTCAACTTGGGATCTTTGTTCAGCTTTTTCAA
AGCCTCCACATCTAGGCAATCAACTCCTATGGCTTTGGCCTTATAACAGT
GCTCCTGATCC
BS14205.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3843-PA | 651 | RpL10Aa-RA | 207..651 | 461..17 | 2225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:30:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Aa-RA | 784 | CG3843-RA | 264..718 | 461..7 | 2245 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15037629..15038083 | 461..7 | 2245 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:30:09 has no hits.
BS14205.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:00 Download gff for
BS14205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3843-PA | 207..651 | 17..461 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:10 Download gff for
BS14205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 264..715 | 9..461 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:36:59 Download gff for
BS14205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 264..715 | 9..461 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:36:59 Download gff for
BS14205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15037629..15038080 | 9..461 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:10 Download gff for
BS14205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10863351..10863802 | 9..461 | 99 | | Minus |
BS14205.complete Sequence
683 bp assembled on 2006-11-01
GenBank Submission: FJ637614
> BS14205.complete
GAAGTTATCAGTCGACATGGTGTCGAAAGTTTCTCGCGATACGATTTACG
TTGCAGTCAAAAATATCCTGCTGAACTCGCAGGCCAAAGGACCAGACTGC
CTGGAGACGGTGGAGCTGCAGATTGGGCTGAGGGATTATGATCCTGACAA
ATGCAAGCGGTTCCATGGAAGTGTACTATTGCATCACCTGGCGGTTCCAC
AACTAAAGGTCTGCGTCTTCGGGGATCAGGAGCACTGTTATAAGGCCAAA
GCCATAGGAGTTGATTGCCTAGATGTGGAGGCTTTGAAAAAGCTGAACAA
AGATCCCAAGTTGACAAAGAAGTTGTCCAAAGCTTACGATGTCTTCCTGG
CCTCCGAATCGATAATTAAGCAGATCCCAAGGCTACTGGGTCCTGGTCTC
ACCAATGCGGGCAAATTTCTTACTCCTTTGGCTCGTGGCGAATCTATGAG
TTCCAAAATCAAAATACTATCTACCAAAAAGAAGCATATGAAAAGGATGG
AATGTCTTTCCGTTAATGTTGGCCATGTTGGCATGCACCCAGAGGAACTA
GCTCGAAACATAGCAATATCGATCAACTTTTTAGTGTCCTTGCTGAAGGA
TAACTGGCAGAATGTGCGCTCACTTCATATAAAATCATCGTTGGGCGTAC
CTCATCAGCTCTATTGAAAGCTTTCTAGACCAT
BS14205.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Aa-RA | 651 | CG3843-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Aa-RA | 784 | CG3843-RA | 58..718 | 17..677 | 3275 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15037423..15038083 | 17..677 | 3275 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-27 06:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 3745..3776 | 87..56 | 106 | 81.2 | Minus |
BS14205.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:21 Download gff for
BS14205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:40 Download gff for
BS14205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 58..715 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:15 Download gff for
BS14205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 58..707 | 17..666 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:21 Download gff for
BS14205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 58..715 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:30 Download gff for
BS14205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 58..707 | 17..666 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:30 Download gff for
BS14205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15037423..15038072 | 17..666 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:15 Download gff for
BS14205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10863145..10863794 | 17..666 | 100 | | Plus |
BS14205.pep Sequence
Translation from 16 to 666
> BS14205.pep
MVSKVSRDTIYVAVKNILLNSQAKGPDCLETVELQIGLRDYDPDKCKRFH
GSVLLHHLAVPQLKVCVFGDQEHCYKAKAIGVDCLDVEALKKLNKDPKLT
KKLSKAYDVFLASESIIKQIPRLLGPGLTNAGKFLTPLARGESMSSKIKI
LSTKKKHMKRMECLSVNVGHVGMHPEELARNIAISINFLVSLLKDNWQNV
RSLHIKSSLGVPHQLY*
BS14205.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Aa-PA | 216 | CG3843-PA | 1..216 | 1..216 | 1113 | 100 | Plus |
RpL10Ab-PA | 217 | CG7283-PA | 1..217 | 1..216 | 676 | 63.6 | Plus |
RpL10Ab-PF | 57 | CG7283-PF | 1..53 | 1..53 | 147 | 60.4 | Plus |