Clone Sequence Records
BS14208.3prime Sequence
511 bp (508 high quality bases) assembled on 2006-10-13
> BS14208.3prime
ATGGTCTAGAAAGCTTTTATTCTCTTAAATTTAAAATGGATGGTAGGGCG
GCTGGTGGTGGTGGTTCGGCGGGTTCCTCCTCCTCTGCCTCCGCCTCCTC
CGCGGCAGCTGCTTCGGCCGCTCTTGCCCGGATTACGGTCAATCTTTGAC
TGTATCTCGTGCGCCGACGACTCGATCGCCTCTTGGGCGCAGGGTCCGTA
AATGGGGGCAAATTATACATCTCCGGCTCGAAGTCGTCCAGGTACTCGAA
GCGCAAGGCGGCCAATTCGGACCAACAGCAGGGAAGGTCCTTTTCGGCCA
ACATTATGACGGGCAGTCGAGCATCGCTCGCCGCCTGAACTCCTTTGGGA
GTGCCATCGAAAACCAGGGTGCAATCAGGTCCAGCATCCCCTAGCCTCGA
CATGGCAATCAGGTAGACGTCGGGCTCGGGTTTGGGTGCCCGCAACTCCG
GATCATCCGCACAGACCACGGGGGAGAAGTTCTCAAAGAAGTCCTCCCGG
CCGCGGATCTT
BS14208.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5561-PA | 918 | CG5561-RA | 424..918 | 511..17 | 2450 | 99.7 | Minus |
CG5556-PA | 900 | CG5556-RA | 547..665 | 388..270 | 270 | 89 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5561-RA | 1091 | CG5561-RA | 528..1022 | 511..17 | 2460 | 99.8 | Minus |
CG5556-RB | 1008 | CG5556-RB | 490..765 | 498..223 | 435 | 77.6 | Minus |
CG5556-RA | 1085 | CG5556-RA | 490..765 | 498..223 | 435 | 77.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1353039..1353533 | 17..511 | 2460 | 99.8 | Plus |
2L | 23513712 | 2L | 1352048..1352323 | 223..498 | 435 | 77.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:13:13 has no hits.
BS14208.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:03 Download gff for
BS14208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5561-PA | 424..918 | 17..511 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:14:52 Download gff for
BS14208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5561-RA | 528..1022 | 17..511 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:21:50 Download gff for
BS14208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5561-RA | 528..1022 | 17..511 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:21:50 Download gff for
BS14208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1353039..1353533 | 17..511 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:14:52 Download gff for
BS14208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1353039..1353533 | 17..511 | 99 | | Plus |
BS14208.5prime Sequence
609 bp (550 high quality bases) assembled on 2006-10-13
> BS14208.5prime
GAAGTTATCAGTCGACATGTGCACTTTTGGCTGCAGGACATGCAAATCTC
AACCAGATTGTGAGGGCTGTTCCCCAAAGTGCTGCAGTCCTTGTATCAGC
TACTGCATTTTCGATCTAGAAAGTGCTGTCTTTGATACTCGCCACGTCTA
CCGGAAGGCTCTCAAGGAACTGGTCCGTTGTTACGATAAGAGGATACCAG
ACATTTTACATGTCCAAAGTGGACCTATGACGATATCAGAGATGTCTGAA
CTTTTTTGCCGGAAGCTCGATATTCCGATGAGTTGGGAATCGTTTCGGTA
TGAACTTAACGAGCGAACCTCCCATTTGATTGCAAATCCCCCGTTTATGG
ATGGGATTGAGCGGCTTGTTCCGCACCTGCGCAATAGCTGCATGGAATTG
GGCTTGATCACCTCCAGCAACGAGGCCAACTACTGCTCGAAGATCCGCGG
CCGGGAGGACTTCTTTGAGAACTTCTCCACCGTGGTCTGTGCGGATGATC
CGGAGTTGCGGGCACCCCAACCCGAGCCCGACGTCTACCTGATTGCCATG
TCGAGGCTAGGGGATGCTGGACCTGATTGCACCCTGGTTTTCAATGGCAC
TCCCAAAGG
BS14208.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5561-PA | 918 | CG5561-RA | 1..593 | 17..609 | 2915 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:09:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5561-RA | 1091 | CG5561-RA | 105..697 | 17..609 | 2935 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1353364..1353839 | 609..134 | 2350 | 99.6 | Minus |
2L | 23513712 | 2L | 1353888..1354005 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:08:58 has no hits.
BS14208.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:03 Download gff for
BS14208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5561-PA | 1..593 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:33 Download gff for
BS14208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5561-RA | 99..697 | 10..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:04 Download gff for
BS14208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5561-RA | 99..697 | 10..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:04 Download gff for
BS14208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1353364..1353838 | 135..609 | 99 | <- | Minus |
2L | 1353888..1354011 | 10..134 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:33 Download gff for
BS14208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1353364..1353838 | 135..609 | 99 | <- | Minus |
arm_2L | 1353888..1354011 | 10..134 | 96 | | Minus |
BS14208.complete Sequence
950 bp assembled on 2006-11-01
GenBank Submission: FJ637615
> BS14208.complete
GAAGTTATCAGTCGACATGTGCACTTTTGGCTGCAGGACATGCAAATCTC
AACCAGATTGTGAGGGCTGTTCCCCAAAGTGCTGCAGTCCTTGTATCAGC
TACTGCATTTTCGATCTAGAAAGTGCTGTCTTTGATACTCGCCACGTCTA
CCGGAAGGCTCTCAAGGAACTGGTCCGTTGTTACGATAAGAGGATACCAG
ACATTTTACATGTCCAAAGTGGACCTATGACGATATCAGAGATGTCTGAA
CTTTTTTGCCGGAAGCTCGATATTCCGATGAGTTGGGAATCGTTTCGGTA
TGAACTTAACGAGCGAACCTCCCATTTGATTGCAAATCCCCCGTTTATGG
ATGGGATTGAGCGGCTTGTTCCGCACCTGCGCAATAGCTGCATGGAATTG
GGCTTGATCACCTCCAGCAACGAGGCCAACTACTGCTCGAAGATCCGCGG
CCGGGAGGACTTCTTTGAGAACTTCTCCACCGTGGTCTGTGCGGATGATC
CGGAGTTGCGGGCACCCAAACCCGAGCCCGACGTCTACCTGATTGCCATG
TCGAGGCTAGGGGATGCTGGACCTGATTGCACCCTGGTTTTCGATGGCAC
TCCCAAAGGAGTTCAGGCGGCGAGCGATGCTCGACTGCCCGTCATAATGT
TGGCCGAAAAGGACCTTCCCTGCTGTTGGTCCGAATTGGCCGCCTTGCGC
TTCGAGTACCTGGACGACTTCGAGCCGGAGATGTATAATTTGCCCCCATT
TACGGACCCTGCGCCCAAGAGGCGATCGAGTCGTCGGCGCACGAGATACA
GTCAAAGATTGACCGTAATCCGGGCAAGAGCGGCCGAAGCAGCTGCCGCG
GAGGAGGCGGAGGCAGAGGAGGAGGAACCCGCCGAACCACCACCACCAGC
CGCCCTACCATCCATTTTAAATTTAAGAGAATAAAAGCTTTCTAGACCAT
BS14208.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5561-RA | 918 | CG5561-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
CG5556-RB | 900 | CG5556-PB | 437..712 | 453..728 | 435 | 77.2 | Plus |
CG5556-RA | 900 | CG5556-PA | 437..712 | 453..728 | 435 | 77.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5561-RA | 1091 | CG5561-RA | 105..1022 | 17..934 | 4590 | 100 | Plus |
CG5556-RB | 1008 | CG5556-RB | 490..765 | 453..728 | 435 | 77.2 | Plus |
CG5556-RA | 1085 | CG5556-RA | 490..765 | 453..728 | 435 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1353039..1353839 | 934..134 | 4005 | 100 | Minus |
2L | 23513712 | 2L | 1353888..1354005 | 134..17 | 590 | 100 | Minus |
2L | 23513712 | 2L | 1352048..1352323 | 728..453 | 435 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:37:55 has no hits.
BS14208.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:42 Download gff for
BS14208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5561-RA | 1..918 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:58 Download gff for
BS14208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5561-RA | 99..1022 | 10..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:32 Download gff for
BS14208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5561-RA | 105..1020 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:42 Download gff for
BS14208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5561-RA | 99..1022 | 10..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:03 Download gff for
BS14208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5561-RA | 105..1020 | 17..932 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:03 Download gff for
BS14208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1353041..1353838 | 135..932 | 100 | <- | Minus |
2L | 1353888..1354005 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:32 Download gff for
BS14208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1353041..1353838 | 135..932 | 100 | <- | Minus |
arm_2L | 1353888..1354005 | 17..134 | 100 | | Minus |
BS14208.pep Sequence
Translation from 16 to 933
> BS14208.pep
MCTFGCRTCKSQPDCEGCSPKCCSPCISYCIFDLESAVFDTRHVYRKALK
ELVRCYDKRIPDILHVQSGPMTISEMSELFCRKLDIPMSWESFRYELNER
TSHLIANPPFMDGIERLVPHLRNSCMELGLITSSNEANYCSKIRGREDFF
ENFSTVVCADDPELRAPKPEPDVYLIAMSRLGDAGPDCTLVFDGTPKGVQ
AASDARLPVIMLAEKDLPCCWSELAALRFEYLDDFEPEMYNLPPFTDPAP
KRRSSRRRTRYSQRLTVIRARAAEAAAAEEAEAEEEEPAEPPPPAALPSI
LNLRE*
BS14208.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5561-PA | 305 | CG5561-PA | 1..305 | 1..305 | 1638 | 100 | Plus |
CG5556-PB | 299 | CG5556-PB | 1..297 | 1..290 | 1007 | 63.3 | Plus |
CG5556-PA | 299 | CG5556-PA | 1..297 | 1..290 | 1007 | 63.3 | Plus |
Gs1l-PA | 231 | CG15441-PA | 9..231 | 27..247 | 286 | 30.9 | Plus |
Gs1l-PB | 231 | CG15441-PB | 9..231 | 27..247 | 259 | 27.4 | Plus |