Clone BS14208 Report

Search the DGRC for BS14208

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG5561-RA
Protein status:BS14208.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14208.3prime Sequence

511 bp (508 high quality bases) assembled on 2006-10-13

> BS14208.3prime
ATGGTCTAGAAAGCTTTTATTCTCTTAAATTTAAAATGGATGGTAGGGCG
GCTGGTGGTGGTGGTTCGGCGGGTTCCTCCTCCTCTGCCTCCGCCTCCTC
CGCGGCAGCTGCTTCGGCCGCTCTTGCCCGGATTACGGTCAATCTTTGAC
TGTATCTCGTGCGCCGACGACTCGATCGCCTCTTGGGCGCAGGGTCCGTA
AATGGGGGCAAATTATACATCTCCGGCTCGAAGTCGTCCAGGTACTCGAA
GCGCAAGGCGGCCAATTCGGACCAACAGCAGGGAAGGTCCTTTTCGGCCA
ACATTATGACGGGCAGTCGAGCATCGCTCGCCGCCTGAACTCCTTTGGGA
GTGCCATCGAAAACCAGGGTGCAATCAGGTCCAGCATCCCCTAGCCTCGA
CATGGCAATCAGGTAGACGTCGGGCTCGGGTTTGGGTGCCCGCAACTCCG
GATCATCCGCACAGACCACGGGGGAGAAGTTCTCAAAGAAGTCCTCCCGG
CCGCGGATCTT

BS14208.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5561-PA 918 CG5561-RA 424..918 511..17 2450 99.7 Minus
CG5556-PA 900 CG5556-RA 547..665 388..270 270 89 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5561-RA 1091 CG5561-RA 528..1022 511..17 2460 99.8 Minus
CG5556-RB 1008 CG5556-RB 490..765 498..223 435 77.6 Minus
CG5556-RA 1085 CG5556-RA 490..765 498..223 435 77.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1353039..1353533 17..511 2460 99.8 Plus
2L 23513712 2L 1352048..1352323 223..498 435 77.2 Plus
Blast to na_te.dros performed on 2015-02-10 18:13:13 has no hits.

BS14208.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:03 Download gff for BS14208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5561-PA 424..918 17..511 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:14:52 Download gff for BS14208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5561-RA 528..1022 17..511 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:21:50 Download gff for BS14208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5561-RA 528..1022 17..511 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:21:50 Download gff for BS14208.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1353039..1353533 17..511 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:14:52 Download gff for BS14208.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1353039..1353533 17..511 99   Plus

BS14208.5prime Sequence

609 bp (550 high quality bases) assembled on 2006-10-13

> BS14208.5prime
GAAGTTATCAGTCGACATGTGCACTTTTGGCTGCAGGACATGCAAATCTC
AACCAGATTGTGAGGGCTGTTCCCCAAAGTGCTGCAGTCCTTGTATCAGC
TACTGCATTTTCGATCTAGAAAGTGCTGTCTTTGATACTCGCCACGTCTA
CCGGAAGGCTCTCAAGGAACTGGTCCGTTGTTACGATAAGAGGATACCAG
ACATTTTACATGTCCAAAGTGGACCTATGACGATATCAGAGATGTCTGAA
CTTTTTTGCCGGAAGCTCGATATTCCGATGAGTTGGGAATCGTTTCGGTA
TGAACTTAACGAGCGAACCTCCCATTTGATTGCAAATCCCCCGTTTATGG
ATGGGATTGAGCGGCTTGTTCCGCACCTGCGCAATAGCTGCATGGAATTG
GGCTTGATCACCTCCAGCAACGAGGCCAACTACTGCTCGAAGATCCGCGG
CCGGGAGGACTTCTTTGAGAACTTCTCCACCGTGGTCTGTGCGGATGATC
CGGAGTTGCGGGCACCCCAACCCGAGCCCGACGTCTACCTGATTGCCATG
TCGAGGCTAGGGGATGCTGGACCTGATTGCACCCTGGTTTTCAATGGCAC
TCCCAAAGG

BS14208.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5561-PA 918 CG5561-RA 1..593 17..609 2915 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5561-RA 1091 CG5561-RA 105..697 17..609 2935 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1353364..1353839 609..134 2350 99.6 Minus
2L 23513712 2L 1353888..1354005 134..17 590 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:08:58 has no hits.

BS14208.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:03 Download gff for BS14208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5561-PA 1..593 17..609 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:33 Download gff for BS14208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5561-RA 99..697 10..609 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:04 Download gff for BS14208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5561-RA 99..697 10..609 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:04 Download gff for BS14208.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1353364..1353838 135..609 99 <- Minus
2L 1353888..1354011 10..134 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:33 Download gff for BS14208.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1353364..1353838 135..609 99 <- Minus
arm_2L 1353888..1354011 10..134 96   Minus

BS14208.complete Sequence

950 bp assembled on 2006-11-01

GenBank Submission: FJ637615

> BS14208.complete
GAAGTTATCAGTCGACATGTGCACTTTTGGCTGCAGGACATGCAAATCTC
AACCAGATTGTGAGGGCTGTTCCCCAAAGTGCTGCAGTCCTTGTATCAGC
TACTGCATTTTCGATCTAGAAAGTGCTGTCTTTGATACTCGCCACGTCTA
CCGGAAGGCTCTCAAGGAACTGGTCCGTTGTTACGATAAGAGGATACCAG
ACATTTTACATGTCCAAAGTGGACCTATGACGATATCAGAGATGTCTGAA
CTTTTTTGCCGGAAGCTCGATATTCCGATGAGTTGGGAATCGTTTCGGTA
TGAACTTAACGAGCGAACCTCCCATTTGATTGCAAATCCCCCGTTTATGG
ATGGGATTGAGCGGCTTGTTCCGCACCTGCGCAATAGCTGCATGGAATTG
GGCTTGATCACCTCCAGCAACGAGGCCAACTACTGCTCGAAGATCCGCGG
CCGGGAGGACTTCTTTGAGAACTTCTCCACCGTGGTCTGTGCGGATGATC
CGGAGTTGCGGGCACCCAAACCCGAGCCCGACGTCTACCTGATTGCCATG
TCGAGGCTAGGGGATGCTGGACCTGATTGCACCCTGGTTTTCGATGGCAC
TCCCAAAGGAGTTCAGGCGGCGAGCGATGCTCGACTGCCCGTCATAATGT
TGGCCGAAAAGGACCTTCCCTGCTGTTGGTCCGAATTGGCCGCCTTGCGC
TTCGAGTACCTGGACGACTTCGAGCCGGAGATGTATAATTTGCCCCCATT
TACGGACCCTGCGCCCAAGAGGCGATCGAGTCGTCGGCGCACGAGATACA
GTCAAAGATTGACCGTAATCCGGGCAAGAGCGGCCGAAGCAGCTGCCGCG
GAGGAGGCGGAGGCAGAGGAGGAGGAACCCGCCGAACCACCACCACCAGC
CGCCCTACCATCCATTTTAAATTTAAGAGAATAAAAGCTTTCTAGACCAT

BS14208.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5561-RA 918 CG5561-PA 1..918 17..934 4590 100 Plus
CG5556-RB 900 CG5556-PB 437..712 453..728 435 77.2 Plus
CG5556-RA 900 CG5556-PA 437..712 453..728 435 77.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5561-RA 1091 CG5561-RA 105..1022 17..934 4590 100 Plus
CG5556-RB 1008 CG5556-RB 490..765 453..728 435 77.2 Plus
CG5556-RA 1085 CG5556-RA 490..765 453..728 435 77.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1353039..1353839 934..134 4005 100 Minus
2L 23513712 2L 1353888..1354005 134..17 590 100 Minus
2L 23513712 2L 1352048..1352323 728..453 435 77.2 Minus
Blast to na_te.dros performed on 2014-11-27 16:37:55 has no hits.

BS14208.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:42 Download gff for BS14208.complete
Subject Subject Range Query Range Percent Splice Strand
CG5561-RA 1..918 17..934 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:58 Download gff for BS14208.complete
Subject Subject Range Query Range Percent Splice Strand
CG5561-RA 99..1022 10..934 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:32 Download gff for BS14208.complete
Subject Subject Range Query Range Percent Splice Strand
CG5561-RA 105..1020 17..932 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:42 Download gff for BS14208.complete
Subject Subject Range Query Range Percent Splice Strand
CG5561-RA 99..1022 10..934 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:03 Download gff for BS14208.complete
Subject Subject Range Query Range Percent Splice Strand
CG5561-RA 105..1020 17..932 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:03 Download gff for BS14208.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1353041..1353838 135..932 100 <- Minus
2L 1353888..1354005 17..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:32 Download gff for BS14208.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1353041..1353838 135..932 100 <- Minus
arm_2L 1353888..1354005 17..134 100   Minus

BS14208.pep Sequence

Translation from 16 to 933

> BS14208.pep
MCTFGCRTCKSQPDCEGCSPKCCSPCISYCIFDLESAVFDTRHVYRKALK
ELVRCYDKRIPDILHVQSGPMTISEMSELFCRKLDIPMSWESFRYELNER
TSHLIANPPFMDGIERLVPHLRNSCMELGLITSSNEANYCSKIRGREDFF
ENFSTVVCADDPELRAPKPEPDVYLIAMSRLGDAGPDCTLVFDGTPKGVQ
AASDARLPVIMLAEKDLPCCWSELAALRFEYLDDFEPEMYNLPPFTDPAP
KRRSSRRRTRYSQRLTVIRARAAEAAAAEEAEAEEEEPAEPPPPAALPSI
LNLRE*

BS14208.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5561-PA 305 CG5561-PA 1..305 1..305 1638 100 Plus
CG5556-PB 299 CG5556-PB 1..297 1..290 1007 63.3 Plus
CG5556-PA 299 CG5556-PA 1..297 1..290 1007 63.3 Plus
Gs1l-PA 231 CG15441-PA 9..231 27..247 286 30.9 Plus
Gs1l-PB 231 CG15441-PB 9..231 27..247 259 27.4 Plus