Clone BS14210 Report

Search the DGRC for BS14210

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG46025-RA
Protein status:BS14210.pep: full length peptide match
Sequenced Size:1358

Clone Sequence Records

BS14210.5prime Sequence

503 bp (428 high quality bases) assembled on 2006-10-13

> BS14210.5prime
GAAGTTATCAGTCGACATGGCACGCCTGGTGTTTACGGAGAAAGATCACA
ATGCATACGATCCCAAAAAGTATAAGGTGGTGCACAAGAACCACTGGCGA
CAGGTCAGCCTGCTGCTGCAGCCTTCCAACAAGAAGTGGTGGGAGGATCC
CGATGTCATTGTTGCTTTCAATTTACCGCGCATTAGCGCCCGCCTGGAGC
GTCTGATGGGCACCAATGTGGTCAAGCTAACGGACCGGAGCTACATGAAG
GAGCTGCGGGAACGAATTGACGAGGATTACCGCAAACAGCTGCTGTCCCG
CATTCGCGCCCGGGAGTTAAAAGAAGTGGAGCGCGAACGAATGCTGATTA
TCGAGGGCAAGTCAGACGTAATACCAGACGAACTAGCCAACGATCCCATA
TTCATGGTTAACAAAGATGCCAACATGGAGATTCAAAAGGAGCGCTCCAA
GCTGAAGACCGCTCGCGAGAAGAACGCGGAGCGTTTGAACCTGCAGGGCG
TTA

BS14210.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7196-PA 1326 CG7196-RA 1..487 17..503 2410 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-RA 1837 CG46025-RA 162..648 17..503 2420 99.8 Plus
CG46025-RC 2036 CG46025-RC 162..648 17..503 2420 99.8 Plus
CG46025-RD 2435 CG46025-RD 710..1047 166..503 1675 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7761885..7762039 166..320 760 99.4 Plus
2L 23513712 2L 7763308..7763444 315..451 685 100 Plus
2L 23513712 2L 7754458..7754549 74..165 460 100 Plus
2L 23513712 2L 7754335..7754396 17..78 310 100 Plus
2L 23513712 2L 7763504..7763557 450..503 255 98.1 Plus
Blast to na_te.dros performed on 2015-02-12 16:53:39 has no hits.

BS14210.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:04 Download gff for BS14210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7196-PA 1..486 17..502 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:09:10 Download gff for BS14210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 162..647 17..502 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:49:40 Download gff for BS14210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG46025-RC 162..647 17..502 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:49:40 Download gff for BS14210.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7763310..7763444 317..451 100 -> Plus
2L 7763506..7763556 452..502 98   Plus
2L 7754335..7754394 17..76 100 -> Plus
2L 7754461..7754549 77..165 100 -> Plus
2L 7761885..7762035 166..316 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:09:10 Download gff for BS14210.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7754335..7754394 17..76 100 -> Plus
arm_2L 7754461..7754549 77..165 100 -> Plus
arm_2L 7761885..7762035 166..316 100 -> Plus
arm_2L 7763310..7763444 317..451 100 -> Plus
arm_2L 7763506..7763556 452..502 98   Plus

BS14210.3prime Sequence

516 bp (468 high quality bases) assembled on 2006-10-13

> BS14210.3prime
ATGGTCTAGAAAGCTTTTAGGCTTTGGCTGGCTCCTGGGCCTCGTGATCG
GAGGAGATATCTTGTTCCGGCTCCTCCACCACCGCCTCCTCCTCGCACTC
CTCCGGTGCCTCGACATAGTTCTCACCCATGATGATCTCCTCGGCCAGTT
GATACAGCTCGCGAATATCCTTGGCATTTCTGAGCGCCACGATCTTCTCA
TCCTCGAAGCGCAGCTGATCGTACTGCTGCTTGGAGATGAGCAGACCTCG
ATTGAACTCGTCCTCCATTTCGGCCTCCAGTTCCTCCGCGTACTGCTGCT
TGGCCAGCGTCAGGCTGATGGCATCCTCGCTGATCACCGTCTCCTCGGAG
ACATCGGTGGCATCGTCCAGATATTTGGAGTTCACTGCGCCGCCCTGGAA
GTCATCGTCCTCCATCGAAGGTTCTTGTGGCATGATGATCTCCCCGCTGG
AACGATGGGCATCCTCGATAAATTCGGTTAGTTGTTGAGTGGTGACCGGC
AGTTTGACATCTTTTA

BS14210.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7196-PA 1326 CG7196-RA 832..1326 511..17 2300 98.5 Minus
CG7196-PB 630 CG7196-RB 136..630 511..17 2300 98.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-RD 2435 CG46025-RD 1387..1886 516..17 2380 98.4 Minus
CG46025-RB 1083 CG46025-RB 234..733 516..17 2380 98.4 Minus
CG46025-RA 1837 CG46025-RA 988..1487 516..17 2380 98.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7764808..7765155 516..169 1635 98 Minus
2L 23513712 2L 7765212..7765366 171..17 760 99.4 Minus
Blast to na_te.dros performed on 2015-02-13 06:10:35 has no hits.

BS14210.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:04 Download gff for BS14210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7196-PB 132..630 17..515 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:42:47 Download gff for BS14210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 989..1487 17..515 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:12:32 Download gff for BS14210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG46025-RA 989..1487 17..515 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:12:32 Download gff for BS14210.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7764809..7765154 170..515 97 -> Minus
2L 7765214..7765366 17..169 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:42:47 Download gff for BS14210.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7764809..7765154 170..515 97 -> Minus
arm_2L 7765214..7765366 17..169 99   Minus

BS14210.complete Sequence

1358 bp assembled on 2009-08-24

GenBank Submission: KX800875

> BS14210.complete
GAAGTTATCAGTCGACATGGCACGCCTGGTGTTTACGGAGAAAGATCACA
ATGCATACGATCCCAAAAAGTATAAGGTGGTGCACAAGAACCACTGGCGA
CAGGTCAGCCTGCTGCTGCAGCCTTCCAACAAGAAGTGGTGGGAGGATCC
CGATGTCATTGTTGCTTTCAATTTACCGCGCATTAGCGCCCGCCTGGAGC
GTCTGATGGGCACCAATGTGGTCAAGCTAACGGACCGGAGCTACATGAAG
GAGCTGCGGGAACGAATTGACGAGGATTACCGCAAACAGCTGCTGTCCCG
CATTCGCGCCCGGGAGTTAAAAGAAGTGGAGCGCGAACGAATGCTGATTA
TCGAGGGCAAGTCAGACGTAATACCAGACGAACTAGCCAACGATCCCATA
TTCATGGTTAACAAAGATGCCAACATGGAGATTCAAAAGGAGCGCTCCAA
GCTGAAGACCGCTCGCGAGAAGAACGCGGAGCGTTTGAAGCTGCAGGGCG
TTAAATGGGAGCGGGAAAGGCTTCAACATGCCGCCAAGGAAGCCGAACTG
CTGGCCAAGAAACGCGAGCGGCACCGCCAACAGAAATTACTGGTGGAGCA
GTACAGGACCGAGGATGCGGAGAGGGGAATGGATCTGCTGCGCATCGATA
ACGAAGACTGGCGGGAGTGCGAAAAGAGCCTGAAGGAGTTCCTCGAACAG
GAGCGTGCCAAAATGAAGGAGCGTTCGTTGCGCATATCCCAGCCCTACTC
CTCGGATCCCCAGGATATACAGAATATAGTCAGGGCCAGGCAAAAGTTCC
GGGAGACCGAGCTGCGTATTCGCAATCAGCTGGAGGACAAGCTAAAAGAT
GTCAAACTTGCGGTCACCACTCAACAACTAACCGAACTTATCGAGGATGC
CCATCGTTCCAGCGGGGAGATCATCATGCCACAAGAACCTTCGATGGAGG
ACGATGACTTCCAGGGCGGCGCAGTGAACTCCAAATATCTGGACGATGCC
ACCGATGTCTCCGAGGAGACGGTGATCAGCGAGGATGCCATCAGCCTGAC
GCTGGCCAAGCAGCAGTACGCGGAGGAACTGGAGGCCGAAATGGAGGACG
AGTTCAATCGAGGTCTGCTCATCTCCAAGCAGCAGTACGATCAGCTGCGC
TTCGAGGATGAGAAGATCGTGGCGCTCAGAAATGCCAAGGATATTCGCGA
GCTGTATCAACTGGCCGAGGAGATCATCATGGGTGAGAACTATGTCGAGG
CACCGGAGGAGTGCGAGGAGGAGGCGGTGGTGGAGGAGCCGGAACAAGAT
ATCTCCTCCGATCACGAGGCCCAGGAGCCAGCCAAAGCCTAAAAGCTTTC
TAGACCAT

BS14210.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-RA 1326 CG46025-PA 1..1326 17..1342 6555 99.6 Plus
CG46025-RC 1326 CG46025-PC 1..1326 17..1342 6555 99.6 Plus
CG46025-RD 1791 CG46025-PD 615..1791 166..1342 5810 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-RA 1837 CG46025-RA 162..1487 17..1342 6555 99.6 Plus
CG46025-RC 2036 CG46025-RC 162..1487 17..1342 6555 99.6 Plus
CG46025-RD 2435 CG46025-RD 710..1886 166..1342 5810 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7764753..7765155 788..1190 1955 99 Plus
2L 23513712 2L 7763504..7763696 450..642 965 100 Plus
2L 23513712 2L 7761885..7762039 166..320 760 99.4 Plus
2L 23513712 2L 7765212..7765366 1188..1342 760 99.4 Plus
2L 23513712 2L 7764540..7764688 642..790 745 100 Plus
2L 23513712 2L 7763308..7763444 315..451 685 100 Plus
2L 23513712 2L 7754458..7754549 74..165 460 100 Plus
2L 23513712 2L 7754335..7754396 17..78 310 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:37:15 has no hits.

BS14210.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:45 Download gff for BS14210.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 145..1468 17..1340 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:57 Download gff for BS14210.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 162..1485 17..1340 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:55 Download gff for BS14210.complete
Subject Subject Range Query Range Percent Splice Strand
CG46025-RC 162..1485 17..1340 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:55 Download gff for BS14210.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7764755..7765154 790..1189 99 -> Plus
2L 7765214..7765364 1190..1340 99   Plus
2L 7764541..7764687 643..789 100 -> Plus
2L 7754335..7754394 17..76 100 -> Plus
2L 7754461..7754549 77..165 100 -> Plus
2L 7761885..7762035 166..316 100 -> Plus
2L 7763310..7763444 317..451 100 -> Plus
2L 7763506..7763696 452..642 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:57 Download gff for BS14210.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7763506..7763696 452..642 100 -> Plus
arm_2L 7764541..7764687 643..789 100 -> Plus
arm_2L 7754335..7754394 17..76 100 -> Plus
arm_2L 7754461..7754549 77..165 100 -> Plus
arm_2L 7761885..7762035 166..316 100 -> Plus
arm_2L 7763310..7763444 317..451 100 -> Plus
arm_2L 7764755..7765154 790..1189 99 -> Plus
arm_2L 7765214..7765364 1190..1340 99   Plus

BS14210.pep Sequence

Translation from 16 to 1341

> BS14210.pep
MARLVFTEKDHNAYDPKKYKVVHKNHWRQVSLLLQPSNKKWWEDPDVIVA
FNLPRISARLERLMGTNVVKLTDRSYMKELRERIDEDYRKQLLSRIRARE
LKEVERERMLIIEGKSDVIPDELANDPIFMVNKDANMEIQKERSKLKTAR
EKNAERLKLQGVKWERERLQHAAKEAELLAKKRERHRQQKLLVEQYRTED
AERGMDLLRIDNEDWRECEKSLKEFLEQERAKMKERSLRISQPYSSDPQD
IQNIVRARQKFRETELRIRNQLEDKLKDVKLAVTTQQLTELIEDAHRSSG
EIIMPQEPSMEDDDFQGGAVNSKYLDDATDVSEETVISEDAISLTLAKQQ
YAEELEAEMEDEFNRGLLISKQQYDQLRFEDEKIVALRNAKDIRELYQLA
EEIIMGENYVEAPEECEEEAVVEEPEQDISSDHEAQEPAKA*

BS14210.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-PA 441 CG46025-PA 1..441 1..441 2233 100 Plus
CG46025-PC 441 CG46025-PC 1..441 1..441 2233 100 Plus
CG46025-PD 596 CG46025-PD 206..596 51..441 1954 100 Plus
CG46025-PB 209 CG46025-PB 1..209 233..441 1041 100 Plus
rudhira-PE 2075 CG43154-PE 1402..1655 57..313 158 24.8 Plus