Clone Sequence Records
BS14210.5prime Sequence
503 bp (428 high quality bases) assembled on 2006-10-13
> BS14210.5prime
GAAGTTATCAGTCGACATGGCACGCCTGGTGTTTACGGAGAAAGATCACA
ATGCATACGATCCCAAAAAGTATAAGGTGGTGCACAAGAACCACTGGCGA
CAGGTCAGCCTGCTGCTGCAGCCTTCCAACAAGAAGTGGTGGGAGGATCC
CGATGTCATTGTTGCTTTCAATTTACCGCGCATTAGCGCCCGCCTGGAGC
GTCTGATGGGCACCAATGTGGTCAAGCTAACGGACCGGAGCTACATGAAG
GAGCTGCGGGAACGAATTGACGAGGATTACCGCAAACAGCTGCTGTCCCG
CATTCGCGCCCGGGAGTTAAAAGAAGTGGAGCGCGAACGAATGCTGATTA
TCGAGGGCAAGTCAGACGTAATACCAGACGAACTAGCCAACGATCCCATA
TTCATGGTTAACAAAGATGCCAACATGGAGATTCAAAAGGAGCGCTCCAA
GCTGAAGACCGCTCGCGAGAAGAACGCGGAGCGTTTGAACCTGCAGGGCG
TTA
BS14210.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7196-PA | 1326 | CG7196-RA | 1..487 | 17..503 | 2410 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-RA | 1837 | CG46025-RA | 162..648 | 17..503 | 2420 | 99.8 | Plus |
CG46025-RC | 2036 | CG46025-RC | 162..648 | 17..503 | 2420 | 99.8 | Plus |
CG46025-RD | 2435 | CG46025-RD | 710..1047 | 166..503 | 1675 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7761885..7762039 | 166..320 | 760 | 99.4 | Plus |
2L | 23513712 | 2L | 7763308..7763444 | 315..451 | 685 | 100 | Plus |
2L | 23513712 | 2L | 7754458..7754549 | 74..165 | 460 | 100 | Plus |
2L | 23513712 | 2L | 7754335..7754396 | 17..78 | 310 | 100 | Plus |
2L | 23513712 | 2L | 7763504..7763557 | 450..503 | 255 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:53:39 has no hits.
BS14210.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:04 Download gff for
BS14210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-PA | 1..486 | 17..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:09:10 Download gff for
BS14210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RA | 162..647 | 17..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:49:40 Download gff for
BS14210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG46025-RC | 162..647 | 17..502 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:49:40 Download gff for
BS14210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7763310..7763444 | 317..451 | 100 | -> | Plus |
2L | 7763506..7763556 | 452..502 | 98 | | Plus |
2L | 7754335..7754394 | 17..76 | 100 | -> | Plus |
2L | 7754461..7754549 | 77..165 | 100 | -> | Plus |
2L | 7761885..7762035 | 166..316 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:09:10 Download gff for
BS14210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7754335..7754394 | 17..76 | 100 | -> | Plus |
arm_2L | 7754461..7754549 | 77..165 | 100 | -> | Plus |
arm_2L | 7761885..7762035 | 166..316 | 100 | -> | Plus |
arm_2L | 7763310..7763444 | 317..451 | 100 | -> | Plus |
arm_2L | 7763506..7763556 | 452..502 | 98 | | Plus |
BS14210.3prime Sequence
516 bp (468 high quality bases) assembled on 2006-10-13
> BS14210.3prime
ATGGTCTAGAAAGCTTTTAGGCTTTGGCTGGCTCCTGGGCCTCGTGATCG
GAGGAGATATCTTGTTCCGGCTCCTCCACCACCGCCTCCTCCTCGCACTC
CTCCGGTGCCTCGACATAGTTCTCACCCATGATGATCTCCTCGGCCAGTT
GATACAGCTCGCGAATATCCTTGGCATTTCTGAGCGCCACGATCTTCTCA
TCCTCGAAGCGCAGCTGATCGTACTGCTGCTTGGAGATGAGCAGACCTCG
ATTGAACTCGTCCTCCATTTCGGCCTCCAGTTCCTCCGCGTACTGCTGCT
TGGCCAGCGTCAGGCTGATGGCATCCTCGCTGATCACCGTCTCCTCGGAG
ACATCGGTGGCATCGTCCAGATATTTGGAGTTCACTGCGCCGCCCTGGAA
GTCATCGTCCTCCATCGAAGGTTCTTGTGGCATGATGATCTCCCCGCTGG
AACGATGGGCATCCTCGATAAATTCGGTTAGTTGTTGAGTGGTGACCGGC
AGTTTGACATCTTTTA
BS14210.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7196-PA | 1326 | CG7196-RA | 832..1326 | 511..17 | 2300 | 98.5 | Minus |
CG7196-PB | 630 | CG7196-RB | 136..630 | 511..17 | 2300 | 98.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-RD | 2435 | CG46025-RD | 1387..1886 | 516..17 | 2380 | 98.4 | Minus |
CG46025-RB | 1083 | CG46025-RB | 234..733 | 516..17 | 2380 | 98.4 | Minus |
CG46025-RA | 1837 | CG46025-RA | 988..1487 | 516..17 | 2380 | 98.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7764808..7765155 | 516..169 | 1635 | 98 | Minus |
2L | 23513712 | 2L | 7765212..7765366 | 171..17 | 760 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:10:35 has no hits.
BS14210.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:04 Download gff for
BS14210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-PB | 132..630 | 17..515 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:42:47 Download gff for
BS14210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RA | 989..1487 | 17..515 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:12:32 Download gff for
BS14210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG46025-RA | 989..1487 | 17..515 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:12:32 Download gff for
BS14210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7764809..7765154 | 170..515 | 97 | -> | Minus |
2L | 7765214..7765366 | 17..169 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:42:47 Download gff for
BS14210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7764809..7765154 | 170..515 | 97 | -> | Minus |
arm_2L | 7765214..7765366 | 17..169 | 99 | | Minus |
BS14210.complete Sequence
1358 bp assembled on 2009-08-24
GenBank Submission: KX800875
> BS14210.complete
GAAGTTATCAGTCGACATGGCACGCCTGGTGTTTACGGAGAAAGATCACA
ATGCATACGATCCCAAAAAGTATAAGGTGGTGCACAAGAACCACTGGCGA
CAGGTCAGCCTGCTGCTGCAGCCTTCCAACAAGAAGTGGTGGGAGGATCC
CGATGTCATTGTTGCTTTCAATTTACCGCGCATTAGCGCCCGCCTGGAGC
GTCTGATGGGCACCAATGTGGTCAAGCTAACGGACCGGAGCTACATGAAG
GAGCTGCGGGAACGAATTGACGAGGATTACCGCAAACAGCTGCTGTCCCG
CATTCGCGCCCGGGAGTTAAAAGAAGTGGAGCGCGAACGAATGCTGATTA
TCGAGGGCAAGTCAGACGTAATACCAGACGAACTAGCCAACGATCCCATA
TTCATGGTTAACAAAGATGCCAACATGGAGATTCAAAAGGAGCGCTCCAA
GCTGAAGACCGCTCGCGAGAAGAACGCGGAGCGTTTGAAGCTGCAGGGCG
TTAAATGGGAGCGGGAAAGGCTTCAACATGCCGCCAAGGAAGCCGAACTG
CTGGCCAAGAAACGCGAGCGGCACCGCCAACAGAAATTACTGGTGGAGCA
GTACAGGACCGAGGATGCGGAGAGGGGAATGGATCTGCTGCGCATCGATA
ACGAAGACTGGCGGGAGTGCGAAAAGAGCCTGAAGGAGTTCCTCGAACAG
GAGCGTGCCAAAATGAAGGAGCGTTCGTTGCGCATATCCCAGCCCTACTC
CTCGGATCCCCAGGATATACAGAATATAGTCAGGGCCAGGCAAAAGTTCC
GGGAGACCGAGCTGCGTATTCGCAATCAGCTGGAGGACAAGCTAAAAGAT
GTCAAACTTGCGGTCACCACTCAACAACTAACCGAACTTATCGAGGATGC
CCATCGTTCCAGCGGGGAGATCATCATGCCACAAGAACCTTCGATGGAGG
ACGATGACTTCCAGGGCGGCGCAGTGAACTCCAAATATCTGGACGATGCC
ACCGATGTCTCCGAGGAGACGGTGATCAGCGAGGATGCCATCAGCCTGAC
GCTGGCCAAGCAGCAGTACGCGGAGGAACTGGAGGCCGAAATGGAGGACG
AGTTCAATCGAGGTCTGCTCATCTCCAAGCAGCAGTACGATCAGCTGCGC
TTCGAGGATGAGAAGATCGTGGCGCTCAGAAATGCCAAGGATATTCGCGA
GCTGTATCAACTGGCCGAGGAGATCATCATGGGTGAGAACTATGTCGAGG
CACCGGAGGAGTGCGAGGAGGAGGCGGTGGTGGAGGAGCCGGAACAAGAT
ATCTCCTCCGATCACGAGGCCCAGGAGCCAGCCAAAGCCTAAAAGCTTTC
TAGACCAT
BS14210.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-RA | 1326 | CG46025-PA | 1..1326 | 17..1342 | 6555 | 99.6 | Plus |
CG46025-RC | 1326 | CG46025-PC | 1..1326 | 17..1342 | 6555 | 99.6 | Plus |
CG46025-RD | 1791 | CG46025-PD | 615..1791 | 166..1342 | 5810 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-RA | 1837 | CG46025-RA | 162..1487 | 17..1342 | 6555 | 99.6 | Plus |
CG46025-RC | 2036 | CG46025-RC | 162..1487 | 17..1342 | 6555 | 99.6 | Plus |
CG46025-RD | 2435 | CG46025-RD | 710..1886 | 166..1342 | 5810 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7764753..7765155 | 788..1190 | 1955 | 99 | Plus |
2L | 23513712 | 2L | 7763504..7763696 | 450..642 | 965 | 100 | Plus |
2L | 23513712 | 2L | 7761885..7762039 | 166..320 | 760 | 99.4 | Plus |
2L | 23513712 | 2L | 7765212..7765366 | 1188..1342 | 760 | 99.4 | Plus |
2L | 23513712 | 2L | 7764540..7764688 | 642..790 | 745 | 100 | Plus |
2L | 23513712 | 2L | 7763308..7763444 | 315..451 | 685 | 100 | Plus |
2L | 23513712 | 2L | 7754458..7754549 | 74..165 | 460 | 100 | Plus |
2L | 23513712 | 2L | 7754335..7754396 | 17..78 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:37:15 has no hits.
BS14210.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:45 Download gff for
BS14210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RA | 145..1468 | 17..1340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:57 Download gff for
BS14210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RA | 162..1485 | 17..1340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:55 Download gff for
BS14210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG46025-RC | 162..1485 | 17..1340 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:55 Download gff for
BS14210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7764755..7765154 | 790..1189 | 99 | -> | Plus |
2L | 7765214..7765364 | 1190..1340 | 99 | | Plus |
2L | 7764541..7764687 | 643..789 | 100 | -> | Plus |
2L | 7754335..7754394 | 17..76 | 100 | -> | Plus |
2L | 7754461..7754549 | 77..165 | 100 | -> | Plus |
2L | 7761885..7762035 | 166..316 | 100 | -> | Plus |
2L | 7763310..7763444 | 317..451 | 100 | -> | Plus |
2L | 7763506..7763696 | 452..642 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:57 Download gff for
BS14210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7763506..7763696 | 452..642 | 100 | -> | Plus |
arm_2L | 7764541..7764687 | 643..789 | 100 | -> | Plus |
arm_2L | 7754335..7754394 | 17..76 | 100 | -> | Plus |
arm_2L | 7754461..7754549 | 77..165 | 100 | -> | Plus |
arm_2L | 7761885..7762035 | 166..316 | 100 | -> | Plus |
arm_2L | 7763310..7763444 | 317..451 | 100 | -> | Plus |
arm_2L | 7764755..7765154 | 790..1189 | 99 | -> | Plus |
arm_2L | 7765214..7765364 | 1190..1340 | 99 | | Plus |
BS14210.pep Sequence
Translation from 16 to 1341
> BS14210.pep
MARLVFTEKDHNAYDPKKYKVVHKNHWRQVSLLLQPSNKKWWEDPDVIVA
FNLPRISARLERLMGTNVVKLTDRSYMKELRERIDEDYRKQLLSRIRARE
LKEVERERMLIIEGKSDVIPDELANDPIFMVNKDANMEIQKERSKLKTAR
EKNAERLKLQGVKWERERLQHAAKEAELLAKKRERHRQQKLLVEQYRTED
AERGMDLLRIDNEDWRECEKSLKEFLEQERAKMKERSLRISQPYSSDPQD
IQNIVRARQKFRETELRIRNQLEDKLKDVKLAVTTQQLTELIEDAHRSSG
EIIMPQEPSMEDDDFQGGAVNSKYLDDATDVSEETVISEDAISLTLAKQQ
YAEELEAEMEDEFNRGLLISKQQYDQLRFEDEKIVALRNAKDIRELYQLA
EEIIMGENYVEAPEECEEEAVVEEPEQDISSDHEAQEPAKA*
BS14210.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-PA | 441 | CG46025-PA | 1..441 | 1..441 | 2233 | 100 | Plus |
CG46025-PC | 441 | CG46025-PC | 1..441 | 1..441 | 2233 | 100 | Plus |
CG46025-PD | 596 | CG46025-PD | 206..596 | 51..441 | 1954 | 100 | Plus |
CG46025-PB | 209 | CG46025-PB | 1..209 | 233..441 | 1041 | 100 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1402..1655 | 57..313 | 158 | 24.8 | Plus |