Clone Sequence Records
BS14211.3prime Sequence
487 bp (437 high quality bases) assembled on 2006-10-13
> BS14211.3prime
ATGGTCTAGAAAGCTTCTATGGTGATTTAGTTTGCGATCCTTCGGGCAGT
TCCTCATCCGCTTGCTGGGAATCCAACTGAACGCCACTGGTGCCCGGCTG
TTGATCATCCACTGCATAGATTCGCTCATCGGTGACCTGCAGACTCAGCA
CGGAGATCGAGGTGACCATAGTGGAGTTGGGCTTAATGCCGTATTTGCCC
AACCGCTCGCCCTTCTCGCTGGCAATCGTATCGGTTCTCAGGTAAACCGC
TCCCTTTGCGGTGATCACGCATAGATCGATATTGGATCCGGAGCCCAGGT
CGTTGAACACACCCGCCGAGATGGCCTCGCGGACCAGCTGCTTGCCCTGC
TCCAGGTCGAGATCGGGCTTCCAGCCGTGCTCCAGCACCGACATGGCTGC
CAAGGTGCCGGAGCCCATGGCCGCGTAGGGTATCTTATCGTTGGAACCGC
ACGGATAGATGCAGTAGAGCTGCGGCCCAGTCGTGTC
BS14211.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18341-PA | 924 | CG18341-RA | 454..924 | 487..17 | 2255 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2R1-RA | 1077 | CG18341-RA | 506..977 | 487..16 | 2300 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5809587..5810058 | 487..16 | 2300 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:00:14 has no hits.
BS14211.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:05 Download gff for
BS14211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18341-PA | 454..924 | 17..487 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:45 Download gff for
BS14211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2R1-RA | 506..977 | 16..487 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:22 Download gff for
BS14211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2R1-RA | 506..977 | 16..487 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:22 Download gff for
BS14211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5809587..5810058 | 16..487 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:45 Download gff for
BS14211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5703620..5704091 | 16..487 | 99 | | Minus |
BS14211.5prime Sequence
466 bp (465 high quality bases) assembled on 2006-10-13
> BS14211.5prime
GAAGTTATCAGTCGACATGCTCTTTCCTTTTTCCGCCCGAAAGGCGAATA
CATCCGCTGATTTTGTTGGCTTGCGGTCCGGATTCAACTTTATAAATTGC
AGGCGAAATGCCGAGCTTTTGTCCAAGGGATATGAGCCACCGAAGGCGAT
CAAAACAGGCACCTCCATTGTGGGCATCATCTACAAGGACGGCGTTATCC
TGGGCGCCGACACTCGCGCCACCGAGGGACCCATTGTTTCCGACAAGAAT
TGCTCAAAAATTCACCACCTTCAGGATCACATATACTGTTGTGGCGCGGG
CACCGCTGCCGACACCGAAATGATTACCCTGACGACCAGCGCCGAGCTGG
ATTTGCATCGGCTGAACACCGAACGACGGGTGCCGGTAGTCTGTGCGAGC
ATGATGCTTCGCAGGACCCTCTTTCGCTACCAGGGCCACATTGGTGCCGC
CTTGGTGATGGGCGGC
BS14211.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18341-PA | 924 | CG18341-RA | 1..450 | 17..466 | 2150 | 99.1 | Plus |
CG3329-PA | 819 | Prosbeta2-RA | 130..206 | 173..249 | 185 | 89.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2R1-RA | 1077 | CG18341-RA | 53..502 | 17..466 | 2190 | 99.1 | Plus |
Prosbeta2-RA | 1034 | CG3329-RA | 209..401 | 135..327 | 335 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5809151..5809331 | 105..285 | 890 | 99.4 | Plus |
X | 23542271 | X | 5809403..5809583 | 286..466 | 860 | 98.3 | Plus |
X | 23542271 | X | 5809006..5809094 | 17..105 | 445 | 100 | Plus |
3L | 28110227 | 3L | 15000229..15000347 | 135..253 | 280 | 82.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:09:31 has no hits.
BS14211.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:05 Download gff for
BS14211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18341-PA | 1..450 | 17..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:20 Download gff for
BS14211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2R1-RA | 44..502 | 7..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:51 Download gff for
BS14211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2R1-RA | 44..502 | 7..466 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:51 Download gff for
BS14211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5808997..5809094 | 7..105 | 96 | -> | Plus |
X | 5809152..5809331 | 106..285 | 99 | -> | Plus |
X | 5809403..5809583 | 286..466 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:20 Download gff for
BS14211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5703030..5703127 | 7..105 | 96 | -> | Plus |
arm_X | 5703185..5703364 | 106..285 | 99 | -> | Plus |
arm_X | 5703436..5703616 | 286..466 | 98 | | Plus |
BS14211.complete Sequence
956 bp assembled on 2006-11-01
> BS14211.complete
GAAGTTATCAGTCGACATGCTCTTTCCTTTTTCCGCCCGAAAGGCGAATA
CATCCGCTGATTTTGTTGGCTTGCGGTCCGGATTCAACTTTATAAATTGC
AGGCGAAATGCCGAGCTTTTGTCCAAGGGATATGAGCCACCGAAGGCGAT
CAAAACAGGCACCTCCATTGTGGGCATCATCTACAAGGACGGCGTTATCC
TGGGCGCCGACACTCGCGCCACCGAGGGACCCATTGTTTCCGACAAGAAT
TGCTCAAAAATTCACCACCTTCAGGATCACATATACTGTTGTGGCGCGGG
CACCGCTGCCGACACCGAAATGATTACCCTGACGACCAGCGCCGAGCTGG
ATTTGCATCGGCTGAACACCGAACGACGGGTGCCGGTAGTCTGTGCGAGC
ATGATGCTTCGCAGGACCCTCTTTCGCTACCAGGGCCACATTGGTGCCGC
CTTGGTGATGGGCGGCGTGGACACGACTGGGCCGCAGCTCTACTGCATCT
ATCCGTGCGGTTCCAACGATAAGATACCCTACGCGGCCATGGGCTCCGGC
ACCTTGGCAGCCATGTCGGTGCTGGAGCACGGCTGGAAGCCCGATCTCGA
CCTGGAGCAGGGCAAGCAGCTGGTCCGCGAGGCCATCTCGGCGGGTGTGT
TCAACGACCTGGGCTCCGGATCCAATATCGATCTATGCGTGATCACCGCA
AAGGGAGCGGTTTACCTGAGAACCGATACGATTGCCAGCGAGAAGGGCGA
GCGGTTGGGCAAATACGGCATTAAGCCCAACTCCACTATGGTCACCTCGA
TCTCCGTGCTGAGTCTGCAGGTCACCGATGAGCGAATCTATGCAGTGGAT
GATCAACAGCCGGGCACCAGTGGCGTTCAGTTGGATTCCCAGCAAGCGGA
TGAGGAACTGCCCGAAGGATCGCAAACTAAATCACCATAGAAGCTTTCTA
GACCAT
BS14211.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2R1-RA | 924 | CG18341-PA | 1..924 | 17..940 | 4500 | 99.1 | Plus |
Prosbeta2-RA | 819 | CG3329-PA | 92..284 | 135..327 | 335 | 78.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2R1-RA | 1077 | CG18341-RA | 53..977 | 17..941 | 4505 | 99.1 | Plus |
Prosbeta2-RA | 1034 | CG3329-RA | 209..401 | 135..327 | 335 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5809403..5810058 | 286..941 | 3175 | 98.9 | Plus |
X | 23542271 | X | 5809151..5809331 | 105..285 | 890 | 99.4 | Plus |
X | 23542271 | X | 5809006..5809094 | 17..105 | 445 | 100 | Plus |
3L | 28110227 | 3L | 15000229..15000347 | 135..253 | 280 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:57:54 has no hits.
BS14211.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:45 Download gff for
BS14211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18341-RA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:46 Download gff for
BS14211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18341-RA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:36 Download gff for
BS14211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2R1-RA | 53..976 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:45 Download gff for
BS14211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18341-RA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:56 Download gff for
BS14211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2R1-RA | 53..976 | 17..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:56 Download gff for
BS14211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5809006..5809094 | 17..105 | 100 | -> | Plus |
X | 5809152..5809331 | 106..285 | 99 | -> | Plus |
X | 5809403..5810057 | 286..940 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:36 Download gff for
BS14211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5703039..5703127 | 17..105 | 100 | -> | Plus |
arm_X | 5703185..5703364 | 106..285 | 99 | -> | Plus |
arm_X | 5703436..5704090 | 286..940 | 98 | | Plus |
BS14211.pep Sequence
Translation from 16 to 939
> BS14211.pep
MLFPFSARKANTSADFVGLRSGFNFINCRRNAELLSKGYEPPKAIKTGTS
IVGIIYKDGVILGADTRATEGPIVSDKNCSKIHHLQDHIYCCGAGTAADT
EMITLTTSAELDLHRLNTERRVPVVCASMMLRRTLFRYQGHIGAALVMGG
VDTTGPQLYCIYPCGSNDKIPYAAMGSGTLAAMSVLEHGWKPDLDLEQGK
QLVREAISAGVFNDLGSGSNIDLCVITAKGAVYLRTDTIASEKGERLGKY
GIKPNSTMVTSISVLSLQVTDERIYAVDDQQPGTSGVQLDSQQADEELPE
GSQTKSP*
BS14211.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2R1-PA | 307 | CG18341-PA | 1..307 | 1..307 | 1588 | 100 | Plus |
Prosbeta2-PA | 272 | CG3329-PA | 11..267 | 20..277 | 860 | 64.7 | Plus |
Prosbeta2R2-PA | 322 | CG12161-PA | 22..266 | 21..264 | 516 | 43.3 | Plus |
Prosbeta1-PA | 224 | CG8392-PA | 12..212 | 45..241 | 233 | 27.4 | Plus |
Prosbeta5-PA | 282 | CG12323-PA | 73..258 | 48..232 | 224 | 32.3 | Plus |