Clone BS14211 Report

Search the DGRC for BS14211

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptProsbeta2R1-RA
Protein status:BS14211.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14211.3prime Sequence

487 bp (437 high quality bases) assembled on 2006-10-13

> BS14211.3prime
ATGGTCTAGAAAGCTTCTATGGTGATTTAGTTTGCGATCCTTCGGGCAGT
TCCTCATCCGCTTGCTGGGAATCCAACTGAACGCCACTGGTGCCCGGCTG
TTGATCATCCACTGCATAGATTCGCTCATCGGTGACCTGCAGACTCAGCA
CGGAGATCGAGGTGACCATAGTGGAGTTGGGCTTAATGCCGTATTTGCCC
AACCGCTCGCCCTTCTCGCTGGCAATCGTATCGGTTCTCAGGTAAACCGC
TCCCTTTGCGGTGATCACGCATAGATCGATATTGGATCCGGAGCCCAGGT
CGTTGAACACACCCGCCGAGATGGCCTCGCGGACCAGCTGCTTGCCCTGC
TCCAGGTCGAGATCGGGCTTCCAGCCGTGCTCCAGCACCGACATGGCTGC
CAAGGTGCCGGAGCCCATGGCCGCGTAGGGTATCTTATCGTTGGAACCGC
ACGGATAGATGCAGTAGAGCTGCGGCCCAGTCGTGTC

BS14211.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG18341-PA 924 CG18341-RA 454..924 487..17 2255 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2R1-RA 1077 CG18341-RA 506..977 487..16 2300 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5809587..5810058 487..16 2300 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 11:00:14 has no hits.

BS14211.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:05 Download gff for BS14211.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18341-PA 454..924 17..487 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:45 Download gff for BS14211.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2R1-RA 506..977 16..487 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:22 Download gff for BS14211.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2R1-RA 506..977 16..487 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:22 Download gff for BS14211.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5809587..5810058 16..487 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:45 Download gff for BS14211.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5703620..5704091 16..487 99   Minus

BS14211.5prime Sequence

466 bp (465 high quality bases) assembled on 2006-10-13

> BS14211.5prime
GAAGTTATCAGTCGACATGCTCTTTCCTTTTTCCGCCCGAAAGGCGAATA
CATCCGCTGATTTTGTTGGCTTGCGGTCCGGATTCAACTTTATAAATTGC
AGGCGAAATGCCGAGCTTTTGTCCAAGGGATATGAGCCACCGAAGGCGAT
CAAAACAGGCACCTCCATTGTGGGCATCATCTACAAGGACGGCGTTATCC
TGGGCGCCGACACTCGCGCCACCGAGGGACCCATTGTTTCCGACAAGAAT
TGCTCAAAAATTCACCACCTTCAGGATCACATATACTGTTGTGGCGCGGG
CACCGCTGCCGACACCGAAATGATTACCCTGACGACCAGCGCCGAGCTGG
ATTTGCATCGGCTGAACACCGAACGACGGGTGCCGGTAGTCTGTGCGAGC
ATGATGCTTCGCAGGACCCTCTTTCGCTACCAGGGCCACATTGGTGCCGC
CTTGGTGATGGGCGGC

BS14211.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG18341-PA 924 CG18341-RA 1..450 17..466 2150 99.1 Plus
CG3329-PA 819 Prosbeta2-RA 130..206 173..249 185 89.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2R1-RA 1077 CG18341-RA 53..502 17..466 2190 99.1 Plus
Prosbeta2-RA 1034 CG3329-RA 209..401 135..327 335 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5809151..5809331 105..285 890 99.4 Plus
X 23542271 X 5809403..5809583 286..466 860 98.3 Plus
X 23542271 X 5809006..5809094 17..105 445 100 Plus
3L 28110227 3L 15000229..15000347 135..253 280 82.4 Plus
Blast to na_te.dros performed on 2015-02-10 21:09:31 has no hits.

BS14211.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:05 Download gff for BS14211.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18341-PA 1..450 17..466 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:20 Download gff for BS14211.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2R1-RA 44..502 7..466 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:51 Download gff for BS14211.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2R1-RA 44..502 7..466 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:51 Download gff for BS14211.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5808997..5809094 7..105 96 -> Plus
X 5809152..5809331 106..285 99 -> Plus
X 5809403..5809583 286..466 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:20 Download gff for BS14211.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5703030..5703127 7..105 96 -> Plus
arm_X 5703185..5703364 106..285 99 -> Plus
arm_X 5703436..5703616 286..466 98   Plus

BS14211.complete Sequence

956 bp assembled on 2006-11-01

> BS14211.complete
GAAGTTATCAGTCGACATGCTCTTTCCTTTTTCCGCCCGAAAGGCGAATA
CATCCGCTGATTTTGTTGGCTTGCGGTCCGGATTCAACTTTATAAATTGC
AGGCGAAATGCCGAGCTTTTGTCCAAGGGATATGAGCCACCGAAGGCGAT
CAAAACAGGCACCTCCATTGTGGGCATCATCTACAAGGACGGCGTTATCC
TGGGCGCCGACACTCGCGCCACCGAGGGACCCATTGTTTCCGACAAGAAT
TGCTCAAAAATTCACCACCTTCAGGATCACATATACTGTTGTGGCGCGGG
CACCGCTGCCGACACCGAAATGATTACCCTGACGACCAGCGCCGAGCTGG
ATTTGCATCGGCTGAACACCGAACGACGGGTGCCGGTAGTCTGTGCGAGC
ATGATGCTTCGCAGGACCCTCTTTCGCTACCAGGGCCACATTGGTGCCGC
CTTGGTGATGGGCGGCGTGGACACGACTGGGCCGCAGCTCTACTGCATCT
ATCCGTGCGGTTCCAACGATAAGATACCCTACGCGGCCATGGGCTCCGGC
ACCTTGGCAGCCATGTCGGTGCTGGAGCACGGCTGGAAGCCCGATCTCGA
CCTGGAGCAGGGCAAGCAGCTGGTCCGCGAGGCCATCTCGGCGGGTGTGT
TCAACGACCTGGGCTCCGGATCCAATATCGATCTATGCGTGATCACCGCA
AAGGGAGCGGTTTACCTGAGAACCGATACGATTGCCAGCGAGAAGGGCGA
GCGGTTGGGCAAATACGGCATTAAGCCCAACTCCACTATGGTCACCTCGA
TCTCCGTGCTGAGTCTGCAGGTCACCGATGAGCGAATCTATGCAGTGGAT
GATCAACAGCCGGGCACCAGTGGCGTTCAGTTGGATTCCCAGCAAGCGGA
TGAGGAACTGCCCGAAGGATCGCAAACTAAATCACCATAGAAGCTTTCTA
GACCAT

BS14211.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2R1-RA 924 CG18341-PA 1..924 17..940 4500 99.1 Plus
Prosbeta2-RA 819 CG3329-PA 92..284 135..327 335 78.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2R1-RA 1077 CG18341-RA 53..977 17..941 4505 99.1 Plus
Prosbeta2-RA 1034 CG3329-RA 209..401 135..327 335 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5809403..5810058 286..941 3175 98.9 Plus
X 23542271 X 5809151..5809331 105..285 890 99.4 Plus
X 23542271 X 5809006..5809094 17..105 445 100 Plus
3L 28110227 3L 15000229..15000347 135..253 280 82.4 Plus
Blast to na_te.dros performed on 2014-11-27 20:57:54 has no hits.

BS14211.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:45 Download gff for BS14211.complete
Subject Subject Range Query Range Percent Splice Strand
CG18341-RA 1..924 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:46 Download gff for BS14211.complete
Subject Subject Range Query Range Percent Splice Strand
CG18341-RA 1..924 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:36 Download gff for BS14211.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2R1-RA 53..976 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:45 Download gff for BS14211.complete
Subject Subject Range Query Range Percent Splice Strand
CG18341-RA 1..924 17..940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:56 Download gff for BS14211.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2R1-RA 53..976 17..940 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:56 Download gff for BS14211.complete
Subject Subject Range Query Range Percent Splice Strand
X 5809006..5809094 17..105 100 -> Plus
X 5809152..5809331 106..285 99 -> Plus
X 5809403..5810057 286..940 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:36 Download gff for BS14211.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5703039..5703127 17..105 100 -> Plus
arm_X 5703185..5703364 106..285 99 -> Plus
arm_X 5703436..5704090 286..940 98   Plus

BS14211.pep Sequence

Translation from 16 to 939

> BS14211.pep
MLFPFSARKANTSADFVGLRSGFNFINCRRNAELLSKGYEPPKAIKTGTS
IVGIIYKDGVILGADTRATEGPIVSDKNCSKIHHLQDHIYCCGAGTAADT
EMITLTTSAELDLHRLNTERRVPVVCASMMLRRTLFRYQGHIGAALVMGG
VDTTGPQLYCIYPCGSNDKIPYAAMGSGTLAAMSVLEHGWKPDLDLEQGK
QLVREAISAGVFNDLGSGSNIDLCVITAKGAVYLRTDTIASEKGERLGKY
GIKPNSTMVTSISVLSLQVTDERIYAVDDQQPGTSGVQLDSQQADEELPE
GSQTKSP*

BS14211.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2R1-PA 307 CG18341-PA 1..307 1..307 1588 100 Plus
Prosbeta2-PA 272 CG3329-PA 11..267 20..277 860 64.7 Plus
Prosbeta2R2-PA 322 CG12161-PA 22..266 21..264 516 43.3 Plus
Prosbeta1-PA 224 CG8392-PA 12..212 45..241 233 27.4 Plus
Prosbeta5-PA 282 CG12323-PA 73..258 48..232 224 32.3 Plus