Clone BS14212 Report

Search the DGRC for BS14212

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG5048-RA
Protein status:BS14212.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14212.3prime Sequence

594 bp (546 high quality bases) assembled on 2006-10-13

> BS14212.3prime
ATGGTCTAGAAAGCTTTTAAAAATTAACATAGTCTAGTTCGCGCTGCAGG
CGCAGAGTGAGACGTAGTTTCTTCAGCTCACTATCGTATTTTGCATGACA
ACGATCAACATTGACGGGATGGGGAAGCGGTAATCGTAAGCGGTACAAAC
ATGTACCCAAATCCAATTCAGTTTCCTGCAAGCTGAGCGACATTTTGTCA
GCAGTCATTTCCTCGTCCGGCAGGGAAACCTCCAAAATGAGGTCCTCACA
GCTGGCCGAGGATCCAGTGCGATTGCCCATCTGCAAGAAAACATCCTCAG
TGCCCACTGCTTGGCGATAGGTCATCGTATACTCGGGAGTCTTCCGCGAT
TCAAGTATATCCATGTCTTCCTTCTCCTGCTGATCTTGCCATTCTTCCAG
ACTCTCGGGCTGTTTTTTCTCTTCCTCCACCAAGGGAGTGCACAAAGGGT
TGGGCTTCTTTTTCTTCTTACCCTTAGCGGTTCCATCCTCCCCATTAGGA
CGTCCAATTGTTCCAGGGTTCATCTTATTGACAACCATTGACTCCTCCTC
ATCCTCGCTACTGCTGTAGTCAATGCCGCCTCTTCTCTGATTGG

BS14212.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-PA 633 CG5048-RA 56..633 594..17 2815 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-RA 964 CG5048-RA 190..769 594..15 2855 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14685380..14685647 282..15 1310 99.3 Minus
3L 28110227 3L 14685084..14685322 519..281 1180 99.6 Minus
3L 28110227 3L 14684957..14685031 594..520 375 100 Minus
Blast to na_te.dros performed 2015-02-10 17:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 1949..2020 409..337 119 64.4 Minus

BS14212.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:06 Download gff for BS14212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5048-PA 56..633 17..594 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:31:32 Download gff for BS14212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 190..777 7..594 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:38 Download gff for BS14212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 190..777 7..594 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:38 Download gff for BS14212.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14685382..14685655 7..280 97   Minus
3L 14684957..14685031 520..594 100 -> Minus
3L 14685084..14685322 281..519 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:31:32 Download gff for BS14212.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14678057..14678131 520..594 100 -> Minus
arm_3L 14678184..14678422 281..519 99 -> Minus
arm_3L 14678482..14678755 7..280 97   Minus

BS14212.5prime Sequence

593 bp (543 high quality bases) assembled on 2006-10-13

> BS14212.5prime
GAAGTTATCAGTCGACATGTCGATCTTTGACCATCCCGAACAGCTGAAAA
TGCTGCAGGGCCTTCTGAATCCCAATCAGAGAAGAGGCGGCATTGACTAC
AGCAGTAGCGAGGATGAGGAGGAGTCAATGGTTGTCAATAAGATGAACCC
TGGAACAATTGGACGTCCTAATGGGGAGGATGGAACCGCTAAGGGTAAGA
AGAAAAAGAAGCCCAACCCTTTGTGCACTCCCTTGGTGGAGGAAGAGAAA
AAACAGCCCGAGAGTCTGGAAGAATGGCAAGATCAGCAGGAGAAGGAAGA
CATGGATATACTTGAATCGCGGAAGACTCCCGAGTATACGATGACCTATC
GCCAAGCAGTGGGCACTGAGGATGTTTTCTTGCAGATGGGCAATCGCACT
GGATCCTCGGCCAGCTGTGAGGACCTCATTTTGGAGGTTTCCCTGCCGGA
CGAGGAAATGACTGCTGACAAAATGTCGCTCAGCTTGCAGGANACTGAAT
TGGATTTGGGTACATGTTTGTACCGCTTACGATTACCGCTTCCCCATCCC
GTCAATGTTGATCGTTGTCATGCAAAATACGATAGTGAGCTGA

BS14212.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-PA 633 CG5048-RA 1..577 17..593 2816 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-RA 964 CG5048-RA 135..711 17..593 2844 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14685084..14685322 147..385 1180 99.6 Plus
3L 28110227 3L 14685380..14685589 384..593 1024 99 Plus
3L 28110227 3L 14684902..14685031 17..146 650 100 Plus
Blast to na_te.dros performed 2015-02-02 17:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 1949..2020 257..329 119 64.4 Plus

BS14212.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:06 Download gff for BS14212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5048-PA 1..576 17..592 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:12 Download gff for BS14212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 126..710 7..592 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:48 Download gff for BS14212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 126..710 7..592 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:48 Download gff for BS14212.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14684893..14685031 7..146 97 -> Plus
3L 14685084..14685322 147..385 99 -> Plus
3L 14685382..14685588 386..592 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:12 Download gff for BS14212.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14677993..14678131 7..146 97 -> Plus
arm_3L 14678184..14678422 147..385 99 -> Plus
arm_3L 14678482..14678688 386..592 99   Plus

BS14212.complete Sequence

665 bp assembled on 2006-11-01

GenBank Submission: FJ637616

> BS14212.complete
GAAGTTATCAGTCGACATGTCGATCTTTGACCATCCCGAACAGCTGAAAA
TGCTGCAGGGCCTTCTGAATCCCAATCAGAGAAGAGGCGGCATTGACTAC
AGCAGTAGCGAGGATGAGGAGGAGTCAATGGTTGTCAATAAGATGAACCC
TGGAACAATTGGACGTCCTAATGGGGAGGATGGAACCGCTAAGGGTAAGA
AGAAAAAGAAGCCCAACCCTTTGTGCACTCCCTTGGTGGAGGAAGAGAAA
AAACAGCCCGAGAGTCTGGAAGAATGGCAAGATCAGCAGGAGAAGGAAGA
CATGGATATACTTGAATCGCGGAAGACTCCCGAGTATACGATGACCTATC
GCCAAGCAGTGGGCACTGAGGATGTTTTCTTGCAGATGGGCAATCGCACT
GGATCCTCGGCCAGCTGTGAGGACCTCATTTTGGAGGTTTCCCTGCCGGA
CGAGGAAATGACTGCTGACAAAATGTCGCTCAGCTTGCAGGAAACTGAAT
TGGATTTGGGTACATGTTTGTACCGCTTACGATTACCGCTTCCCCATCCC
GTCAATGTTGATCGTTGTCATGCAAAATACGATAGTGAGCTGAAGAAACT
ACGTCTCACTCTGCGCCTGCAGCGCGAACTAGACTATGTTAATTTTTAAA
AGCTTTCTAGACCAT

BS14212.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-RA 633 CG5048-PA 1..633 17..649 3120 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-RA 964 CG5048-RA 135..769 17..651 3130 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14685380..14685647 384..651 1310 99.3 Plus
3L 28110227 3L 14685084..14685322 147..385 1180 99.6 Plus
3L 28110227 3L 14684902..14685031 17..146 650 100 Plus
Blast to na_te.dros performed 2014-11-27 10:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 1949..2020 257..329 119 64.4 Plus

BS14212.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:43 Download gff for BS14212.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 1..633 17..649 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:59 Download gff for BS14212.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 169..820 7..659 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:09 Download gff for BS14212.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 135..765 17..647 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:44 Download gff for BS14212.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 169..820 7..659 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:10 Download gff for BS14212.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 135..765 17..647 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:10 Download gff for BS14212.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14684902..14685031 17..146 100 -> Plus
3L 14685084..14685322 147..385 99 -> Plus
3L 14685382..14685643 386..647 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:09 Download gff for BS14212.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14678184..14678422 147..385 99 -> Plus
arm_3L 14678002..14678131 17..146 100 -> Plus
arm_3L 14678482..14678743 386..647 99   Plus

BS14212.pep Sequence

Translation from 16 to 648

> BS14212.pep
MSIFDHPEQLKMLQGLLNPNQRRGGIDYSSSEDEEESMVVNKMNPGTIGR
PNGEDGTAKGKKKKKPNPLCTPLVEEEKKQPESLEEWQDQQEKEDMDILE
SRKTPEYTMTYRQAVGTEDVFLQMGNRTGSSASCEDLILEVSLPDEEMTA
DKMSLSLQETELDLGTCLYRLRLPLPHPVNVDRCHAKYDSELKKLRLTLR
LQRELDYVNF*

BS14212.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-PA 210 CG5048-PA 1..210 1..210 1099 100 Plus