Clone Sequence Records
BS14212.3prime Sequence
594 bp (546 high quality bases) assembled on 2006-10-13
> BS14212.3prime
ATGGTCTAGAAAGCTTTTAAAAATTAACATAGTCTAGTTCGCGCTGCAGG
CGCAGAGTGAGACGTAGTTTCTTCAGCTCACTATCGTATTTTGCATGACA
ACGATCAACATTGACGGGATGGGGAAGCGGTAATCGTAAGCGGTACAAAC
ATGTACCCAAATCCAATTCAGTTTCCTGCAAGCTGAGCGACATTTTGTCA
GCAGTCATTTCCTCGTCCGGCAGGGAAACCTCCAAAATGAGGTCCTCACA
GCTGGCCGAGGATCCAGTGCGATTGCCCATCTGCAAGAAAACATCCTCAG
TGCCCACTGCTTGGCGATAGGTCATCGTATACTCGGGAGTCTTCCGCGAT
TCAAGTATATCCATGTCTTCCTTCTCCTGCTGATCTTGCCATTCTTCCAG
ACTCTCGGGCTGTTTTTTCTCTTCCTCCACCAAGGGAGTGCACAAAGGGT
TGGGCTTCTTTTTCTTCTTACCCTTAGCGGTTCCATCCTCCCCATTAGGA
CGTCCAATTGTTCCAGGGTTCATCTTATTGACAACCATTGACTCCTCCTC
ATCCTCGCTACTGCTGTAGTCAATGCCGCCTCTTCTCTGATTGG
BS14212.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5048-PA | 633 | CG5048-RA | 56..633 | 594..17 | 2815 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5048-RA | 964 | CG5048-RA | 190..769 | 594..15 | 2855 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14685380..14685647 | 282..15 | 1310 | 99.3 | Minus |
3L | 28110227 | 3L | 14685084..14685322 | 519..281 | 1180 | 99.6 | Minus |
3L | 28110227 | 3L | 14684957..14685031 | 594..520 | 375 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 17:30:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 1949..2020 | 409..337 | 119 | 64.4 | Minus |
BS14212.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:06 Download gff for
BS14212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-PA | 56..633 | 17..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:31:32 Download gff for
BS14212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 190..777 | 7..594 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:38 Download gff for
BS14212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 190..777 | 7..594 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:38 Download gff for
BS14212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14685382..14685655 | 7..280 | 97 | | Minus |
3L | 14684957..14685031 | 520..594 | 100 | -> | Minus |
3L | 14685084..14685322 | 281..519 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:31:32 Download gff for
BS14212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14678057..14678131 | 520..594 | 100 | -> | Minus |
arm_3L | 14678184..14678422 | 281..519 | 99 | -> | Minus |
arm_3L | 14678482..14678755 | 7..280 | 97 | | Minus |
BS14212.5prime Sequence
593 bp (543 high quality bases) assembled on 2006-10-13
> BS14212.5prime
GAAGTTATCAGTCGACATGTCGATCTTTGACCATCCCGAACAGCTGAAAA
TGCTGCAGGGCCTTCTGAATCCCAATCAGAGAAGAGGCGGCATTGACTAC
AGCAGTAGCGAGGATGAGGAGGAGTCAATGGTTGTCAATAAGATGAACCC
TGGAACAATTGGACGTCCTAATGGGGAGGATGGAACCGCTAAGGGTAAGA
AGAAAAAGAAGCCCAACCCTTTGTGCACTCCCTTGGTGGAGGAAGAGAAA
AAACAGCCCGAGAGTCTGGAAGAATGGCAAGATCAGCAGGAGAAGGAAGA
CATGGATATACTTGAATCGCGGAAGACTCCCGAGTATACGATGACCTATC
GCCAAGCAGTGGGCACTGAGGATGTTTTCTTGCAGATGGGCAATCGCACT
GGATCCTCGGCCAGCTGTGAGGACCTCATTTTGGAGGTTTCCCTGCCGGA
CGAGGAAATGACTGCTGACAAAATGTCGCTCAGCTTGCAGGANACTGAAT
TGGATTTGGGTACATGTTTGTACCGCTTACGATTACCGCTTCCCCATCCC
GTCAATGTTGATCGTTGTCATGCAAAATACGATAGTGAGCTGA
BS14212.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5048-PA | 633 | CG5048-RA | 1..577 | 17..593 | 2816 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:42:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5048-RA | 964 | CG5048-RA | 135..711 | 17..593 | 2844 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14685084..14685322 | 147..385 | 1180 | 99.6 | Plus |
3L | 28110227 | 3L | 14685380..14685589 | 384..593 | 1024 | 99 | Plus |
3L | 28110227 | 3L | 14684902..14685031 | 17..146 | 650 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 17:42:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 1949..2020 | 257..329 | 119 | 64.4 | Plus |
BS14212.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:06 Download gff for
BS14212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-PA | 1..576 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:12 Download gff for
BS14212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 126..710 | 7..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:48 Download gff for
BS14212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 126..710 | 7..592 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:48 Download gff for
BS14212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14684893..14685031 | 7..146 | 97 | -> | Plus |
3L | 14685084..14685322 | 147..385 | 99 | -> | Plus |
3L | 14685382..14685588 | 386..592 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:12 Download gff for
BS14212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14677993..14678131 | 7..146 | 97 | -> | Plus |
arm_3L | 14678184..14678422 | 147..385 | 99 | -> | Plus |
arm_3L | 14678482..14678688 | 386..592 | 99 | | Plus |
BS14212.complete Sequence
665 bp assembled on 2006-11-01
GenBank Submission: FJ637616
> BS14212.complete
GAAGTTATCAGTCGACATGTCGATCTTTGACCATCCCGAACAGCTGAAAA
TGCTGCAGGGCCTTCTGAATCCCAATCAGAGAAGAGGCGGCATTGACTAC
AGCAGTAGCGAGGATGAGGAGGAGTCAATGGTTGTCAATAAGATGAACCC
TGGAACAATTGGACGTCCTAATGGGGAGGATGGAACCGCTAAGGGTAAGA
AGAAAAAGAAGCCCAACCCTTTGTGCACTCCCTTGGTGGAGGAAGAGAAA
AAACAGCCCGAGAGTCTGGAAGAATGGCAAGATCAGCAGGAGAAGGAAGA
CATGGATATACTTGAATCGCGGAAGACTCCCGAGTATACGATGACCTATC
GCCAAGCAGTGGGCACTGAGGATGTTTTCTTGCAGATGGGCAATCGCACT
GGATCCTCGGCCAGCTGTGAGGACCTCATTTTGGAGGTTTCCCTGCCGGA
CGAGGAAATGACTGCTGACAAAATGTCGCTCAGCTTGCAGGAAACTGAAT
TGGATTTGGGTACATGTTTGTACCGCTTACGATTACCGCTTCCCCATCCC
GTCAATGTTGATCGTTGTCATGCAAAATACGATAGTGAGCTGAAGAAACT
ACGTCTCACTCTGCGCCTGCAGCGCGAACTAGACTATGTTAATTTTTAAA
AGCTTTCTAGACCAT
BS14212.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5048-RA | 633 | CG5048-PA | 1..633 | 17..649 | 3120 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5048-RA | 964 | CG5048-RA | 135..769 | 17..651 | 3130 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14685380..14685647 | 384..651 | 1310 | 99.3 | Plus |
3L | 28110227 | 3L | 14685084..14685322 | 147..385 | 1180 | 99.6 | Plus |
3L | 28110227 | 3L | 14684902..14685031 | 17..146 | 650 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 1949..2020 | 257..329 | 119 | 64.4 | Plus |
BS14212.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:43 Download gff for
BS14212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 1..633 | 17..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:59 Download gff for
BS14212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 169..820 | 7..659 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:09 Download gff for
BS14212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 135..765 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:44 Download gff for
BS14212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 169..820 | 7..659 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:10 Download gff for
BS14212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 135..765 | 17..647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:10 Download gff for
BS14212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14684902..14685031 | 17..146 | 100 | -> | Plus |
3L | 14685084..14685322 | 147..385 | 99 | -> | Plus |
3L | 14685382..14685643 | 386..647 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:09 Download gff for
BS14212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14678184..14678422 | 147..385 | 99 | -> | Plus |
arm_3L | 14678002..14678131 | 17..146 | 100 | -> | Plus |
arm_3L | 14678482..14678743 | 386..647 | 99 | | Plus |
BS14212.pep Sequence
Translation from 16 to 648
> BS14212.pep
MSIFDHPEQLKMLQGLLNPNQRRGGIDYSSSEDEEESMVVNKMNPGTIGR
PNGEDGTAKGKKKKKPNPLCTPLVEEEKKQPESLEEWQDQQEKEDMDILE
SRKTPEYTMTYRQAVGTEDVFLQMGNRTGSSASCEDLILEVSLPDEEMTA
DKMSLSLQETELDLGTCLYRLRLPLPHPVNVDRCHAKYDSELKKLRLTLR
LQRELDYVNF*
BS14212.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5048-PA | 210 | CG5048-PA | 1..210 | 1..210 | 1099 | 100 | Plus |