Clone Sequence Records
BS14215.3prime Sequence
617 bp (478 high quality bases) assembled on 2006-10-13
> BS14215.3prime
ATGGTCTAGAAAGCTTCTACATCTTCCTAATCTCAATCAGTAGGGCGCTG
TATAGAGATTGACAGAACTCCTCGAGACCCGCGTACGCGTTCCTCTCGAT
AAAGGTCTTGACCACTGCCCACACGGACTTGAGAAACTGGATCTCGGCAA
AGACCAAAACGTCCGTGTGCTCTTCCACGGTGGCCTTCAGGCAGAAGTGC
ATCAGGACGACGAAGGTGTCCGCGTAGGGGATATCTGCGTTAACGCTCTG
CACATCGATCGAGTACAGTTGGCCGGGTTGGCTGCACTCGCGCATGGTCT
GTGTCTCGGTAATTTTGGCAGTTTTGGGACCAACGTTCGCCTGAAGTGCC
ACAGTCATTGAGACAGTGCGCTGATTCTGGCCGCCGGCATTTCGCGCCCA
GACGCCCATATTCAGATCGGTGGACTTGCGCCGCTCATGGAAGCTCTGCA
GGAACGGCGAGGCAGAGAAGAGCATGTTGAACCGTGCGTCCACCCGCACC
ATCAGCCGCTCCTGCAAAAGCTTGCGCCCCTCGTGCGACGCACTGCCCCG
GGGCGGTAGGTCCTCTGGCCTTCTGTACCCCGATGTTTGCGGTATATTTT
CTCTGCTGACCAGCGCC
BS14215.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30284-PB | 978 | CG30284-RB | 378..978 | 617..17 | 2830 | 98.8 | Minus |
CG30284-PA | 1062 | CG30284-RA | 499..1062 | 580..17 | 2670 | 98.9 | Minus |
CG30284-PA | 1062 | CG30284-RA | 378..413 | 617..582 | 180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30284-RB | 1083 | CG30284-RB | 441..1041 | 617..17 | 2900 | 99 | Minus |
CG30284-RA | 1180 | CG30284-RA | 575..1138 | 580..17 | 2730 | 99.1 | Minus |
CG30284-RA | 1180 | CG30284-RA | 454..489 | 617..582 | 180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21650862..21651425 | 17..580 | 2730 | 98.9 | Plus |
2R | 25286936 | 2R | 21651511..21651546 | 582..617 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:53:56 has no hits.
BS14215.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:08 Download gff for
BS14215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-PB | 378..978 | 17..617 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:09:11 Download gff for
BS14215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-RB | 441..1043 | 13..617 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:28 Download gff for
BS14215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-RB | 441..1043 | 13..617 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:28 Download gff for
BS14215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21650860..21651424 | 13..579 | 98 | <- | Plus |
2R | 21651509..21651546 | 580..617 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:09:11 Download gff for
BS14215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17538365..17538929 | 13..579 | 98 | <- | Plus |
arm_2R | 17539014..17539051 | 580..617 | 97 | | Plus |
BS14215.5prime Sequence
575 bp (501 high quality bases) assembled on 2006-10-13
> BS14215.5prime
GAAGTTATCAGTCGACATGAAGTCGATTCAGGCCCGGTTGAACCACCGAT
TCCGAAAAACTTTGGCGATGGACAAGCCGTCTAGCAGCAATAGCAATCGA
ATGAGCAGGAGCACTTCGAACTGCAGGAGCCCGGCCATAATACGTAGTCC
GCTGAACTCTGAGGAATTTCAGGACTCGGCAACGGCTGCCGCCACACAAC
AACGGCTTTTCTGGAGCGGCCAGCGGGCCTCGACGGCGGGCAGGGATGAT
AAAACCAAGCCTGATTCGACTGCCGCCGGAAAAAAGAAGCCACCTACGAC
GACAAGGCAGTCAAATTTTACCCAGACCGAACGAAGACGGACACATCGCA
AGCTGAGTCCGCGGAGCACGCGTTGCAATTCGGTGGCAGTTACGGCGCTG
GTCAGCAGAGAAAATATACCGCAAACATCCGGGTACAGAAAGCCAGAGGA
CCTAACCGCCCGGTGCAGTGCGTCGCACGAGGGGCGCAAGCTTCTGCAGG
AGCGGCTGATGGTGCGGGTGGACGCACTGTTCAACATGCTCTTCTCTGCC
TCGCCGTTCCTGCAGAGCTTCCATG
BS14215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30284-PB | 978 | CG30284-RB | 1..559 | 17..575 | 2720 | 99.4 | Plus |
CG30284-PA | 1062 | CG30284-RA | 1..416 | 17..432 | 2030 | 99.5 | Plus |
CG30284-PA | 1062 | CG30284-RA | 499..643 | 431..575 | 700 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30284-RB | 1083 | CG30284-RB | 64..622 | 17..575 | 2750 | 99.5 | Plus |
CG30284-RA | 1180 | CG30284-RA | 77..492 | 17..432 | 2050 | 99.5 | Plus |
CG30284-RA | 1180 | CG30284-RA | 575..719 | 431..575 | 710 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21651508..21651923 | 432..17 | 2050 | 99.5 | Minus |
2R | 25286936 | 2R | 21651281..21651425 | 575..431 | 710 | 99.3 | Minus |
Blast to na_te.dros performed 2015-02-11 19:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osvaldo | 1543 | Osvaldo OSV 1543bp | 8..58 | 136..185 | 108 | 70.6 | Plus |
BS14215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:09 Download gff for
BS14215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-PB | 1..559 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:35 Download gff for
BS14215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-RB | 64..622 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:00:39 Download gff for
BS14215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-RB | 64..622 | 17..575 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:00:39 Download gff for
BS14215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21651509..21651923 | 17..431 | 99 | | Minus |
2R | 21651281..21651424 | 432..575 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:35 Download gff for
BS14215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17538786..17538929 | 432..575 | 99 | <- | Minus |
arm_2R | 17539014..17539428 | 17..431 | 99 | | Minus |
BS14215.complete Sequence
1010 bp assembled on 2009-08-24
GenBank Submission: KX800398
> BS14215.complete
GAAGTTATCAGTCGACATGAAGTCGATTCAGGCCCGGTTGAACCACCGAT
TCCGAAAAACTTTGGCGATGGACAAGCCGTCTAGCAGCAATAGCAATCGA
ATGAGCAGGAGCACTTCGAACTGCAGGAGCCCGGCCATAATACGTAGTCC
GCTGAACTCTGAGGAATTTCAGGACTCGGCAACGGCTGCCGCCACACAAC
AACGGCTTTTCTGGAGCGGCCAGCGGGCCTCGACGGCGGGCAGGGATGAT
AAAACCAAGCCTGATTCGACTGCCGCCGGAAAAAAGAAGCCACCTACGAC
GACAAGGCAGTCAAATTTTACCCAGACCGAACGAAGACGGACACATCGCA
AGCTGAGTCCGCGGAGCACGCGTTGCAATTCGGTGGCAGTTACGGCGCTG
GTCAGCAGAGAAAATATACCGCAAACATCCGGGTACAGAAGGCCAGAGGA
CCTAACCGCCCGGTGCAGTGCGTCGCACGAGGGGCGCAAGCTTCTGCAGG
AGCGGCTGATGGTGCGGGTGGACGCACTGTTCAACATGCTCTTCTCTGCC
TCGCCGTTCCTGCAGAGCTTCCATGAGCGGCGCAAGTCCACCGATCTGAA
TATGGGCGTCTGGGCGCGAAATGCCGGCGGCCAGAATCAGCGCACTGTCT
CAATGACTGTGGCACTTCAGGCGAACGTTGGTCCCAAAACTGCCAAAATT
ACCGAGACACAGACCATGCGCGAGTGCAGCCAACCCGGCCAACTGTACTC
GATCGATGTGCAGAGCGTTAACGCAGATATCCCCTACGCGGACACCTTCG
TCGTCCTGATGCACTTCTGCCTGAAGGCCACCGTGGAAGAGCACACGGAC
GTTTTGGTCTTTGCCGAGATCCAGTTTCTCAAGTCCGTGTGGGCAGTGGT
CAAGACCTTTATCGAGAGGAACGCGTACGCGGGTCTCGAGGAGTTCTGTC
AATCTCTATACAGCGCCCTACTGATTGAGATTAGGAAGATGTAGAAGCTT
TCTAGACCAT
BS14215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30284-RB | 978 | CG30284-PB | 1..978 | 17..994 | 4860 | 99.8 | Plus |
CG30284-RA | 1062 | CG30284-PA | 499..1062 | 431..994 | 2820 | 100 | Plus |
CG30284-RA | 1062 | CG30284-PA | 1..416 | 17..432 | 2050 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30284-RB | 1083 | CG30284-RB | 64..1041 | 17..994 | 4860 | 99.8 | Plus |
CG30284-RA | 1180 | CG30284-RA | 575..1138 | 431..994 | 2820 | 100 | Plus |
CG30284-RA | 1180 | CG30284-RA | 77..492 | 17..432 | 2050 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21650862..21651425 | 994..431 | 2820 | 100 | Minus |
2R | 25286936 | 2R | 21651508..21651923 | 432..17 | 2050 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:37:07 has no hits.
BS14215.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:45 Download gff for
BS14215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-RB | 64..1041 | 17..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:53 Download gff for
BS14215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-RB | 64..1041 | 17..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:51 Download gff for
BS14215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-RB | 64..1041 | 17..994 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:51 Download gff for
BS14215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21650862..21651424 | 432..994 | 100 | <- | Minus |
2R | 21651509..21651923 | 17..431 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:53 Download gff for
BS14215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17538367..17538929 | 432..994 | 100 | <- | Minus |
arm_2R | 17539014..17539428 | 17..431 | 99 | | Minus |
BS14215.pep Sequence
Translation from 16 to 993
> BS14215.pep
MKSIQARLNHRFRKTLAMDKPSSSNSNRMSRSTSNCRSPAIIRSPLNSEE
FQDSATAAATQQRLFWSGQRASTAGRDDKTKPDSTAAGKKKPPTTTRQSN
FTQTERRRTHRKLSPRSTRCNSVAVTALVSRENIPQTSGYRRPEDLTARC
SASHEGRKLLQERLMVRVDALFNMLFSASPFLQSFHERRKSTDLNMGVWA
RNAGGQNQRTVSMTVALQANVGPKTAKITETQTMRECSQPGQLYSIDVQS
VNADIPYADTFVVLMHFCLKATVEEHTDVLVFAEIQFLKSVWAVVKTFIE
RNAYAGLEEFCQSLYSALLIEIRKM*
BS14215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30284-PB | 325 | CG30284-PB | 1..325 | 1..325 | 1655 | 100 | Plus |
CG30284-PA | 353 | CG30284-PA | 1..353 | 1..325 | 1616 | 92.1 | Plus |
CG34394-PG | 804 | CG34394-PG | 161..469 | 15..321 | 517 | 38.2 | Plus |
CG34394-PA | 1138 | CG34394-PA | 596..904 | 15..321 | 517 | 38.2 | Plus |
CG34394-PH | 1206 | CG34394-PH | 572..880 | 15..321 | 517 | 38.2 | Plus |