Clone BS14215 Report

Search the DGRC for BS14215

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG30284-RB
Protein status:BS14215.pep: full length peptide match
Sequenced Size:1010

Clone Sequence Records

BS14215.3prime Sequence

617 bp (478 high quality bases) assembled on 2006-10-13

> BS14215.3prime
ATGGTCTAGAAAGCTTCTACATCTTCCTAATCTCAATCAGTAGGGCGCTG
TATAGAGATTGACAGAACTCCTCGAGACCCGCGTACGCGTTCCTCTCGAT
AAAGGTCTTGACCACTGCCCACACGGACTTGAGAAACTGGATCTCGGCAA
AGACCAAAACGTCCGTGTGCTCTTCCACGGTGGCCTTCAGGCAGAAGTGC
ATCAGGACGACGAAGGTGTCCGCGTAGGGGATATCTGCGTTAACGCTCTG
CACATCGATCGAGTACAGTTGGCCGGGTTGGCTGCACTCGCGCATGGTCT
GTGTCTCGGTAATTTTGGCAGTTTTGGGACCAACGTTCGCCTGAAGTGCC
ACAGTCATTGAGACAGTGCGCTGATTCTGGCCGCCGGCATTTCGCGCCCA
GACGCCCATATTCAGATCGGTGGACTTGCGCCGCTCATGGAAGCTCTGCA
GGAACGGCGAGGCAGAGAAGAGCATGTTGAACCGTGCGTCCACCCGCACC
ATCAGCCGCTCCTGCAAAAGCTTGCGCCCCTCGTGCGACGCACTGCCCCG
GGGCGGTAGGTCCTCTGGCCTTCTGTACCCCGATGTTTGCGGTATATTTT
CTCTGCTGACCAGCGCC

BS14215.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-PB 978 CG30284-RB 378..978 617..17 2830 98.8 Minus
CG30284-PA 1062 CG30284-RA 499..1062 580..17 2670 98.9 Minus
CG30284-PA 1062 CG30284-RA 378..413 617..582 180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-RB 1083 CG30284-RB 441..1041 617..17 2900 99 Minus
CG30284-RA 1180 CG30284-RA 575..1138 580..17 2730 99.1 Minus
CG30284-RA 1180 CG30284-RA 454..489 617..582 180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21650862..21651425 17..580 2730 98.9 Plus
2R 25286936 2R 21651511..21651546 582..617 180 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:53:56 has no hits.

BS14215.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:08 Download gff for BS14215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30284-PB 378..978 17..617 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:09:11 Download gff for BS14215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 441..1043 13..617 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:28 Download gff for BS14215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 441..1043 13..617 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:28 Download gff for BS14215.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21650860..21651424 13..579 98 <- Plus
2R 21651509..21651546 580..617 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:09:11 Download gff for BS14215.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17538365..17538929 13..579 98 <- Plus
arm_2R 17539014..17539051 580..617 97   Plus

BS14215.5prime Sequence

575 bp (501 high quality bases) assembled on 2006-10-13

> BS14215.5prime
GAAGTTATCAGTCGACATGAAGTCGATTCAGGCCCGGTTGAACCACCGAT
TCCGAAAAACTTTGGCGATGGACAAGCCGTCTAGCAGCAATAGCAATCGA
ATGAGCAGGAGCACTTCGAACTGCAGGAGCCCGGCCATAATACGTAGTCC
GCTGAACTCTGAGGAATTTCAGGACTCGGCAACGGCTGCCGCCACACAAC
AACGGCTTTTCTGGAGCGGCCAGCGGGCCTCGACGGCGGGCAGGGATGAT
AAAACCAAGCCTGATTCGACTGCCGCCGGAAAAAAGAAGCCACCTACGAC
GACAAGGCAGTCAAATTTTACCCAGACCGAACGAAGACGGACACATCGCA
AGCTGAGTCCGCGGAGCACGCGTTGCAATTCGGTGGCAGTTACGGCGCTG
GTCAGCAGAGAAAATATACCGCAAACATCCGGGTACAGAAAGCCAGAGGA
CCTAACCGCCCGGTGCAGTGCGTCGCACGAGGGGCGCAAGCTTCTGCAGG
AGCGGCTGATGGTGCGGGTGGACGCACTGTTCAACATGCTCTTCTCTGCC
TCGCCGTTCCTGCAGAGCTTCCATG

BS14215.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-PB 978 CG30284-RB 1..559 17..575 2720 99.4 Plus
CG30284-PA 1062 CG30284-RA 1..416 17..432 2030 99.5 Plus
CG30284-PA 1062 CG30284-RA 499..643 431..575 700 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-RB 1083 CG30284-RB 64..622 17..575 2750 99.5 Plus
CG30284-RA 1180 CG30284-RA 77..492 17..432 2050 99.5 Plus
CG30284-RA 1180 CG30284-RA 575..719 431..575 710 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21651508..21651923 432..17 2050 99.5 Minus
2R 25286936 2R 21651281..21651425 575..431 710 99.3 Minus
Blast to na_te.dros performed 2015-02-11 19:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
Osvaldo 1543 Osvaldo OSV 1543bp 8..58 136..185 108 70.6 Plus

BS14215.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:09 Download gff for BS14215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30284-PB 1..559 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:35 Download gff for BS14215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 64..622 17..575 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:00:39 Download gff for BS14215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 64..622 17..575 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:00:39 Download gff for BS14215.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21651509..21651923 17..431 99   Minus
2R 21651281..21651424 432..575 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:35 Download gff for BS14215.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17538786..17538929 432..575 99 <- Minus
arm_2R 17539014..17539428 17..431 99   Minus

BS14215.complete Sequence

1010 bp assembled on 2009-08-24

GenBank Submission: KX800398

> BS14215.complete
GAAGTTATCAGTCGACATGAAGTCGATTCAGGCCCGGTTGAACCACCGAT
TCCGAAAAACTTTGGCGATGGACAAGCCGTCTAGCAGCAATAGCAATCGA
ATGAGCAGGAGCACTTCGAACTGCAGGAGCCCGGCCATAATACGTAGTCC
GCTGAACTCTGAGGAATTTCAGGACTCGGCAACGGCTGCCGCCACACAAC
AACGGCTTTTCTGGAGCGGCCAGCGGGCCTCGACGGCGGGCAGGGATGAT
AAAACCAAGCCTGATTCGACTGCCGCCGGAAAAAAGAAGCCACCTACGAC
GACAAGGCAGTCAAATTTTACCCAGACCGAACGAAGACGGACACATCGCA
AGCTGAGTCCGCGGAGCACGCGTTGCAATTCGGTGGCAGTTACGGCGCTG
GTCAGCAGAGAAAATATACCGCAAACATCCGGGTACAGAAGGCCAGAGGA
CCTAACCGCCCGGTGCAGTGCGTCGCACGAGGGGCGCAAGCTTCTGCAGG
AGCGGCTGATGGTGCGGGTGGACGCACTGTTCAACATGCTCTTCTCTGCC
TCGCCGTTCCTGCAGAGCTTCCATGAGCGGCGCAAGTCCACCGATCTGAA
TATGGGCGTCTGGGCGCGAAATGCCGGCGGCCAGAATCAGCGCACTGTCT
CAATGACTGTGGCACTTCAGGCGAACGTTGGTCCCAAAACTGCCAAAATT
ACCGAGACACAGACCATGCGCGAGTGCAGCCAACCCGGCCAACTGTACTC
GATCGATGTGCAGAGCGTTAACGCAGATATCCCCTACGCGGACACCTTCG
TCGTCCTGATGCACTTCTGCCTGAAGGCCACCGTGGAAGAGCACACGGAC
GTTTTGGTCTTTGCCGAGATCCAGTTTCTCAAGTCCGTGTGGGCAGTGGT
CAAGACCTTTATCGAGAGGAACGCGTACGCGGGTCTCGAGGAGTTCTGTC
AATCTCTATACAGCGCCCTACTGATTGAGATTAGGAAGATGTAGAAGCTT
TCTAGACCAT

BS14215.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-RB 978 CG30284-PB 1..978 17..994 4860 99.8 Plus
CG30284-RA 1062 CG30284-PA 499..1062 431..994 2820 100 Plus
CG30284-RA 1062 CG30284-PA 1..416 17..432 2050 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-RB 1083 CG30284-RB 64..1041 17..994 4860 99.8 Plus
CG30284-RA 1180 CG30284-RA 575..1138 431..994 2820 100 Plus
CG30284-RA 1180 CG30284-RA 77..492 17..432 2050 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21650862..21651425 994..431 2820 100 Minus
2R 25286936 2R 21651508..21651923 432..17 2050 99.5 Minus
Blast to na_te.dros performed on 2014-11-28 01:37:07 has no hits.

BS14215.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:45 Download gff for BS14215.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 64..1041 17..994 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:53 Download gff for BS14215.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 64..1041 17..994 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:51 Download gff for BS14215.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 64..1041 17..994 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:51 Download gff for BS14215.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21650862..21651424 432..994 100 <- Minus
2R 21651509..21651923 17..431 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:53 Download gff for BS14215.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17538367..17538929 432..994 100 <- Minus
arm_2R 17539014..17539428 17..431 99   Minus

BS14215.pep Sequence

Translation from 16 to 993

> BS14215.pep
MKSIQARLNHRFRKTLAMDKPSSSNSNRMSRSTSNCRSPAIIRSPLNSEE
FQDSATAAATQQRLFWSGQRASTAGRDDKTKPDSTAAGKKKPPTTTRQSN
FTQTERRRTHRKLSPRSTRCNSVAVTALVSRENIPQTSGYRRPEDLTARC
SASHEGRKLLQERLMVRVDALFNMLFSASPFLQSFHERRKSTDLNMGVWA
RNAGGQNQRTVSMTVALQANVGPKTAKITETQTMRECSQPGQLYSIDVQS
VNADIPYADTFVVLMHFCLKATVEEHTDVLVFAEIQFLKSVWAVVKTFIE
RNAYAGLEEFCQSLYSALLIEIRKM*

BS14215.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-PB 325 CG30284-PB 1..325 1..325 1655 100 Plus
CG30284-PA 353 CG30284-PA 1..353 1..325 1616 92.1 Plus
CG34394-PG 804 CG34394-PG 161..469 15..321 517 38.2 Plus
CG34394-PA 1138 CG34394-PA 596..904 15..321 517 38.2 Plus
CG34394-PH 1206 CG34394-PH 572..880 15..321 517 38.2 Plus