Clone BS14218 Report

Search the DGRC for BS14218

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG9306-RA
Protein status:BS14218.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14218.3prime Sequence

465 bp (443 high quality bases) assembled on 2006-10-13

> BS14218.3prime
ATGGTCTAGAAAGCTTTTAGTGGTGTCCCAGGTCCTTGGGGTCGGGCTTG
CCGTACTGCTTCTCCCACCAGGTCACAAACTCCTTCTTGCGCTGCTCCCG
CTTGGCAAAGTACTCGGGGTACTGGGCCTTCTCCAGGGGATGCCAGTAGT
CCAGGACCCAGTCGGGCGGAATCACCTCTCGTTCGAAAGCACAGCCACCG
GCACTGTTGGCAAAGTTTCGGGGCTGGAAATGCCTTGTCTCGAAAAGCTC
CCTTTGTCCACAGGCTAGGAGGCGGATGCCCTCGCCCAGATCTTTGGAGC
GGTTTTCGTCGAAGCGAGCACGCAGCTGCACAGCGCGGTAGCGGTAGACA
TTGCGTCGGTCGTACCACGACTCTAAGTTGCGCAGTGCTCGCTTGTACAG
GCTGCACACCTGGCGCTTGTGCGAGACGATTGCCAAGGGAACTTGGGCCA
TGTCGACTGATAACT

BS14218.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9306-PA 435 CG9306-RA 1..435 451..17 2175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9306-RB 687 CG9306-RB 172..606 451..17 2175 100 Minus
CG9306-RA 787 CG9306-RA 88..522 451..17 2175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13370368..13370564 17..213 985 100 Plus
2L 23513712 2L 13370624..13370764 214..354 705 100 Plus
2L 23513712 2L 13370842..13370939 354..451 490 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:22:23 has no hits.

BS14218.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:11 Download gff for BS14218.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9306-PA 1..435 17..451 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:20:56 Download gff for BS14218.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 88..526 11..451 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:26 Download gff for BS14218.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 88..526 11..451 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:26 Download gff for BS14218.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13370364..13370564 11..213 98 <- Plus
2L 13370624..13370763 214..353 100 <- Plus
2L 13370842..13370939 354..451 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:20:56 Download gff for BS14218.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13370364..13370564 11..213 98 <- Plus
arm_2L 13370624..13370763 214..353 100 <- Plus
arm_2L 13370842..13370939 354..451 100   Plus

BS14218.5prime Sequence

465 bp (442 high quality bases) assembled on 2006-10-13

> BS14218.5prime
GAAGTTATCAGTCGACATGGCCCAAGTTCCCTTGGCAATCGTCTCGCACA
AGCGCCAGGTGTGCAGCCTGTACAAGCGAGCACTGCGCAACTTAGAGTCG
TGGTACGACCGACGCAATGTCTACCGCTACCGCGCTGTGCAGCTGCGTGC
TCGCTTCGACGAAAACCGCTCCAAAGATCTGGGCGAGGGCATCCGCCTCC
TAGCCTGTGGACAAAGGGAGCTTTTCGAGACAAGGCATTTCCAGCCCCGA
AACTTTGCCAACAGTGCCGGTGGCTGTGCTTTCGAACGAGAGGTGATTCC
GCCCGACTGGGTCCTGGACTACTGGCATCCCCTGGAGAAGGCCCAGTACC
CCGAGTACTTTGCCAAGCGGGAGCAGCGCAAGAAGGAGTTTGTGACCTGG
TGGGAGAAGCAGTACGGCAAGCCCGACCCCAAGGACCTGGGACACCACTA
AAAGCTTTCTAGACC

BS14218.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9306-PA 435 CG9306-RA 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9306-RB 687 CG9306-RB 172..606 17..451 2175 100 Plus
CG9306-RA 787 CG9306-RA 88..522 17..451 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13370368..13370564 451..255 985 100 Minus
2L 23513712 2L 13370624..13370764 254..114 705 100 Minus
2L 23513712 2L 13370842..13370939 114..17 490 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:37:53 has no hits.

BS14218.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:12 Download gff for BS14218.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9306-PA 1..435 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:38 Download gff for BS14218.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 88..526 17..457 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:05 Download gff for BS14218.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 88..526 17..457 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:05 Download gff for BS14218.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13370364..13370564 255..457 98 <- Minus
2L 13370624..13370763 115..254 100 <- Minus
2L 13370842..13370939 17..114 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:38 Download gff for BS14218.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13370364..13370564 255..457 98 <- Minus
arm_2L 13370624..13370763 115..254 100 <- Minus
arm_2L 13370842..13370939 17..114 100   Minus

BS14218.complete Sequence

467 bp assembled on 2006-11-01

GenBank Submission: FJ637617

> BS14218.complete
GAAGTTATCAGTCGACATGGCCCAAGTTCCCTTGGCAATCGTCTCGCACA
AGCGCCAGGTGTGCAGCCTGTACAAGCGAGCACTGCGCAACTTAGAGTCG
TGGTACGACCGACGCAATGTCTACCGCTACCGCGCTGTGCAGCTGCGTGC
TCGCTTCGACGAAAACCGCTCCAAAGATCTGGGCGAGGGCATCCGCCTCC
TAGCCTGTGGACAAAGGGAGCTTTTCGAGACAAGGCATTTCCAGCCCCGA
AACTTTGCCAACAGTGCCGGTGGCTGTGCTTTCGAACGAGAGGTGATTCC
GCCCGACTGGGTCCTGGACTACTGGCATCCCCTGGAGAAGGCCCAGTACC
CCGAGTACTTTGCCAAGCGGGAGCAGCGCAAGAAGGAGTTTGTGACCTGG
TGGGAGAAGCAGTACGGCAAGCCCGACCCCAAGGACCTGGGACACCACTA
AAAGCTTTCTAGACCAT

BS14218.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9306-RB 435 CG9306-PB 1..435 17..451 2175 100 Plus
CG9306-RA 435 CG9306-PA 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9306-RB 687 CG9306-RB 172..606 17..451 2175 100 Plus
CG9306-RA 787 CG9306-RA 88..522 17..451 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13370368..13370564 451..255 985 100 Minus
2L 23513712 2L 13370624..13370764 254..114 705 100 Minus
2L 23513712 2L 13370842..13370939 114..17 490 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:44:06 has no hits.

BS14218.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:45 Download gff for BS14218.complete
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 1..435 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:33 Download gff for BS14218.complete
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 145..583 17..457 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:48 Download gff for BS14218.complete
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 88..520 17..449 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:45 Download gff for BS14218.complete
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 145..583 17..457 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:23 Download gff for BS14218.complete
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 88..520 17..449 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:23 Download gff for BS14218.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13370370..13370564 255..449 100 <- Minus
2L 13370624..13370763 115..254 100 <- Minus
2L 13370842..13370939 17..114 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:48 Download gff for BS14218.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13370370..13370564 255..449 100 <- Minus
arm_2L 13370624..13370763 115..254 100 <- Minus
arm_2L 13370842..13370939 17..114 100   Minus

BS14218.pep Sequence

Translation from 16 to 450

> BS14218.pep
MAQVPLAIVSHKRQVCSLYKRALRNLESWYDRRNVYRYRAVQLRARFDEN
RSKDLGEGIRLLACGQRELFETRHFQPRNFANSAGGCAFEREVIPPDWVL
DYWHPLEKAQYPEYFAKREQRKKEFVTWWEKQYGKPDPKDLGHH*

BS14218.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9306-PB 144 CG9306-PB 1..144 1..144 796 100 Plus
CG9306-PA 144 CG9306-PA 1..144 1..144 796 100 Plus