Clone Sequence Records
BS14218.3prime Sequence
465 bp (443 high quality bases) assembled on 2006-10-13
> BS14218.3prime
ATGGTCTAGAAAGCTTTTAGTGGTGTCCCAGGTCCTTGGGGTCGGGCTTG
CCGTACTGCTTCTCCCACCAGGTCACAAACTCCTTCTTGCGCTGCTCCCG
CTTGGCAAAGTACTCGGGGTACTGGGCCTTCTCCAGGGGATGCCAGTAGT
CCAGGACCCAGTCGGGCGGAATCACCTCTCGTTCGAAAGCACAGCCACCG
GCACTGTTGGCAAAGTTTCGGGGCTGGAAATGCCTTGTCTCGAAAAGCTC
CCTTTGTCCACAGGCTAGGAGGCGGATGCCCTCGCCCAGATCTTTGGAGC
GGTTTTCGTCGAAGCGAGCACGCAGCTGCACAGCGCGGTAGCGGTAGACA
TTGCGTCGGTCGTACCACGACTCTAAGTTGCGCAGTGCTCGCTTGTACAG
GCTGCACACCTGGCGCTTGTGCGAGACGATTGCCAAGGGAACTTGGGCCA
TGTCGACTGATAACT
BS14218.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9306-PA | 435 | CG9306-RA | 1..435 | 451..17 | 2175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:22:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9306-RB | 687 | CG9306-RB | 172..606 | 451..17 | 2175 | 100 | Minus |
CG9306-RA | 787 | CG9306-RA | 88..522 | 451..17 | 2175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13370368..13370564 | 17..213 | 985 | 100 | Plus |
2L | 23513712 | 2L | 13370624..13370764 | 214..354 | 705 | 100 | Plus |
2L | 23513712 | 2L | 13370842..13370939 | 354..451 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:22:23 has no hits.
BS14218.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:11 Download gff for
BS14218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-PA | 1..435 | 17..451 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:20:56 Download gff for
BS14218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 88..526 | 11..451 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:26 Download gff for
BS14218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 88..526 | 11..451 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:26 Download gff for
BS14218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13370364..13370564 | 11..213 | 98 | <- | Plus |
2L | 13370624..13370763 | 214..353 | 100 | <- | Plus |
2L | 13370842..13370939 | 354..451 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:20:56 Download gff for
BS14218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13370364..13370564 | 11..213 | 98 | <- | Plus |
arm_2L | 13370624..13370763 | 214..353 | 100 | <- | Plus |
arm_2L | 13370842..13370939 | 354..451 | 100 | | Plus |
BS14218.5prime Sequence
465 bp (442 high quality bases) assembled on 2006-10-13
> BS14218.5prime
GAAGTTATCAGTCGACATGGCCCAAGTTCCCTTGGCAATCGTCTCGCACA
AGCGCCAGGTGTGCAGCCTGTACAAGCGAGCACTGCGCAACTTAGAGTCG
TGGTACGACCGACGCAATGTCTACCGCTACCGCGCTGTGCAGCTGCGTGC
TCGCTTCGACGAAAACCGCTCCAAAGATCTGGGCGAGGGCATCCGCCTCC
TAGCCTGTGGACAAAGGGAGCTTTTCGAGACAAGGCATTTCCAGCCCCGA
AACTTTGCCAACAGTGCCGGTGGCTGTGCTTTCGAACGAGAGGTGATTCC
GCCCGACTGGGTCCTGGACTACTGGCATCCCCTGGAGAAGGCCCAGTACC
CCGAGTACTTTGCCAAGCGGGAGCAGCGCAAGAAGGAGTTTGTGACCTGG
TGGGAGAAGCAGTACGGCAAGCCCGACCCCAAGGACCTGGGACACCACTA
AAAGCTTTCTAGACC
BS14218.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9306-PA | 435 | CG9306-RA | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9306-RB | 687 | CG9306-RB | 172..606 | 17..451 | 2175 | 100 | Plus |
CG9306-RA | 787 | CG9306-RA | 88..522 | 17..451 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13370368..13370564 | 451..255 | 985 | 100 | Minus |
2L | 23513712 | 2L | 13370624..13370764 | 254..114 | 705 | 100 | Minus |
2L | 23513712 | 2L | 13370842..13370939 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:37:53 has no hits.
BS14218.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:12 Download gff for
BS14218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-PA | 1..435 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:38 Download gff for
BS14218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 88..526 | 17..457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:05 Download gff for
BS14218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 88..526 | 17..457 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:05 Download gff for
BS14218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13370364..13370564 | 255..457 | 98 | <- | Minus |
2L | 13370624..13370763 | 115..254 | 100 | <- | Minus |
2L | 13370842..13370939 | 17..114 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:38 Download gff for
BS14218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13370364..13370564 | 255..457 | 98 | <- | Minus |
arm_2L | 13370624..13370763 | 115..254 | 100 | <- | Minus |
arm_2L | 13370842..13370939 | 17..114 | 100 | | Minus |
BS14218.complete Sequence
467 bp assembled on 2006-11-01
GenBank Submission: FJ637617
> BS14218.complete
GAAGTTATCAGTCGACATGGCCCAAGTTCCCTTGGCAATCGTCTCGCACA
AGCGCCAGGTGTGCAGCCTGTACAAGCGAGCACTGCGCAACTTAGAGTCG
TGGTACGACCGACGCAATGTCTACCGCTACCGCGCTGTGCAGCTGCGTGC
TCGCTTCGACGAAAACCGCTCCAAAGATCTGGGCGAGGGCATCCGCCTCC
TAGCCTGTGGACAAAGGGAGCTTTTCGAGACAAGGCATTTCCAGCCCCGA
AACTTTGCCAACAGTGCCGGTGGCTGTGCTTTCGAACGAGAGGTGATTCC
GCCCGACTGGGTCCTGGACTACTGGCATCCCCTGGAGAAGGCCCAGTACC
CCGAGTACTTTGCCAAGCGGGAGCAGCGCAAGAAGGAGTTTGTGACCTGG
TGGGAGAAGCAGTACGGCAAGCCCGACCCCAAGGACCTGGGACACCACTA
AAAGCTTTCTAGACCAT
BS14218.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9306-RB | 435 | CG9306-PB | 1..435 | 17..451 | 2175 | 100 | Plus |
CG9306-RA | 435 | CG9306-PA | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9306-RB | 687 | CG9306-RB | 172..606 | 17..451 | 2175 | 100 | Plus |
CG9306-RA | 787 | CG9306-RA | 88..522 | 17..451 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13370368..13370564 | 451..255 | 985 | 100 | Minus |
2L | 23513712 | 2L | 13370624..13370764 | 254..114 | 705 | 100 | Minus |
2L | 23513712 | 2L | 13370842..13370939 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:44:06 has no hits.
BS14218.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:45 Download gff for
BS14218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 1..435 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:33 Download gff for
BS14218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 145..583 | 17..457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:48 Download gff for
BS14218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 88..520 | 17..449 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:45 Download gff for
BS14218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 145..583 | 17..457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:23 Download gff for
BS14218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 88..520 | 17..449 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:23 Download gff for
BS14218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13370370..13370564 | 255..449 | 100 | <- | Minus |
2L | 13370624..13370763 | 115..254 | 100 | <- | Minus |
2L | 13370842..13370939 | 17..114 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:48 Download gff for
BS14218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13370370..13370564 | 255..449 | 100 | <- | Minus |
arm_2L | 13370624..13370763 | 115..254 | 100 | <- | Minus |
arm_2L | 13370842..13370939 | 17..114 | 100 | | Minus |
BS14218.pep Sequence
Translation from 16 to 450
> BS14218.pep
MAQVPLAIVSHKRQVCSLYKRALRNLESWYDRRNVYRYRAVQLRARFDEN
RSKDLGEGIRLLACGQRELFETRHFQPRNFANSAGGCAFEREVIPPDWVL
DYWHPLEKAQYPEYFAKREQRKKEFVTWWEKQYGKPDPKDLGHH*
BS14218.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9306-PB | 144 | CG9306-PB | 1..144 | 1..144 | 796 | 100 | Plus |
CG9306-PA | 144 | CG9306-PA | 1..144 | 1..144 | 796 | 100 | Plus |