Clone Sequence Records
BS14219.3prime Sequence
598 bp (488 high quality bases) assembled on 2006-10-13
> BS14219.3prime
ATGGTCTAGAAAGCTTTCATTTTCTGAATCGGAATCTAACATTTTCCAGA
CCATGCGCCTGACGTTTCAGACTGCCGCTGTCGGCCCAGGAGGAGTTGAG
ATACTCGTCGTCATCGTCTTGCTCAAGTTTCTTGAGTTCCTCCTGGCGGC
GATAGGCCTCGGCCATCATCTGGCGACGCAAGGGATCGGAGATCACGGCT
TCGCGTCCCGGTGGTCCTTCACCAATTTGATTCAGCTTCACGACCACCTT
GGTTTTGTCGTTGTGACCCAAATAGTCGCTCATTAGCTTCCCCATCAGCA
TCTGGTGTCCTGCAAACCAGAACTGAGCCTTGGACGGTTCGATGACCTCC
TTGGAGGCCTGGGTGCCAGTCAGATCCTCGGTATTGGTGAACTCCATGCG
TATGGAGTCGTGGGGCGGCAATTGCATGGGATATACAATAGTGACACCAC
CACGCAGGAGGTTCAACGCCTCCTCAACGATCTTTGGGGTCAAGGTCTTT
GAGGATTTACCTAAGCGCCGATCCACCATAGCCTTGGCGTCGTTCATGGC
ACCTGCCAGGACCTTTTGCATCGCCTCAGTTGGGTGCTGTCCGTTACG
BS14219.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18675-PA | 876 | CG18675-RA | 295..876 | 598..17 | 2835 | 99.4 | Minus |
CG1232-PA | 1359 | tipE-RA | 1295..1359 | 131..67 | 325 | 100 | Minus |
CG1232-PB | 1359 | tipE-RB | 1295..1359 | 131..67 | 325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18675-RA | 1608 | CG18675-RA | 364..945 | 598..17 | 2865 | 99.5 | Minus |
tipE-RB | 3938 | CG1232-RB | 2341..2455 | 131..17 | 575 | 100 | Minus |
tipE-RA | 3396 | CG1232-RA | 2487..2601 | 131..17 | 575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4174393..4174665 | 518..246 | 1350 | 99.6 | Minus |
3L | 28110227 | 3L | 4174724..4174842 | 249..131 | 580 | 99.2 | Minus |
3L | 28110227 | 3L | 4192190..4192305 | 132..17 | 580 | 100 | Minus |
3L | 28110227 | 3L | 4174247..4174327 | 598..518 | 390 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:03:21 has no hits.
BS14219.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:12 Download gff for
BS14219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-PA | 295..876 | 17..598 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:05 Download gff for
BS14219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 364..947 | 13..598 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:50 Download gff for
BS14219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 364..947 | 13..598 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:50 Download gff for
BS14219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4174247..4174327 | 518..598 | 98 | -> | Minus |
3L | 4174394..4174663 | 248..517 | 99 | -> | Minus |
3L | 4174726..4174842 | 131..247 | 99 | -> | Minus |
3L | 4192192..4192307 | 13..130 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:05 Download gff for
BS14219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4174247..4174327 | 518..598 | 98 | -> | Minus |
arm_3L | 4174394..4174663 | 248..517 | 99 | -> | Minus |
arm_3L | 4174726..4174842 | 131..247 | 99 | -> | Minus |
arm_3L | 4192192..4192307 | 13..130 | 98 | | Minus |
BS14219.5prime Sequence
552 bp (486 high quality bases) assembled on 2006-10-13
> BS14219.5prime
GAAGTTATCAGTCGACATGGTGCTTCTCCAGGTGAAACGCGGAGACGAGC
TTATCTTCCTCTATGAGACAAGCGTTAAGGAGAAGACCGATACTGTGCTT
CGCGAGCTTGTGGCTCTGCACAATGGTCAACTGAAGATTCAGCGTGTCTG
CATGGAGATTGAGGAGCTGGCCGAACATGGCACCATGGTGCCGCCTGAAA
TGATTGGCCTCAACGAGGAACAGAGGGAAGAGCTCAAGCTTAAGGATGTC
TGGGCGGATAAGTGCATCCCGTCTGGTGGTTTCACTATCAACAAGGATCC
GCTCCTTCGCCGTAACGGACAGCAGCCAACTGAGGCGATGCAAAAGGTCC
TTGCAGGTGCCATGAACGACGCCAAGGCTATGGTGGATCGGCGCTTAGCT
AAATCCTCAAAGACCTTGACCCCAAAGATCGTTGAGGAGGCGTTGAACCT
CCTGCGTGGTGGTGTCACTATTGTATATCCCATGCAATTGCCGCCCCACG
ACTCCATACGCATGGAGTTCACCAATACCGAGGATCTGACTGGCACCCCA
GC
BS14219.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18675-PA | 876 | CG18675-RA | 1..532 | 17..548 | 2585 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18675-RA | 1608 | CG18675-RA | 66..601 | 13..548 | 2620 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4173949..4174327 | 13..391 | 1835 | 98.9 | Plus |
3L | 28110227 | 3L | 4174393..4174550 | 391..548 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:47:42 has no hits.
BS14219.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:12 Download gff for
BS14219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-PA | 1..534 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:46 Download gff for
BS14219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 57..603 | 5..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:27 Download gff for
BS14219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 57..603 | 5..552 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:27 Download gff for
BS14219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4173940..4174327 | 5..391 | 98 | -> | Plus |
3L | 4174394..4174552 | 392..552 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:46 Download gff for
BS14219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4173940..4174327 | 5..391 | 98 | -> | Plus |
arm_3L | 4174394..4174552 | 392..552 | 98 | | Plus |
BS14219.complete Sequence
908 bp assembled on 2006-11-01
GenBank Submission: FJ637618
> BS14219.complete
GAAGTTATCAGTCGACATGGTGCTTCTCCAGGTGAAACGCGGAGACGAGC
TTATCTTCCTCTATGAGACAAGCGTTAAGGAGAAGACCGATACTGTGCTT
CGCGAGCTTGTGGCTCTGCACAATGGTCAACTGAAGATTCAGCGTGTCTG
CATGGAGATTGAGGAGCTGGCCGAACATGGCACCATGGTGCCGCCTGAAA
TGATTGGCCTCAACGAGGAACAGAGGGAAGAGCTCAAGCTTAAGGATGTC
TGGGCGGATAAGTGCATCCCGTCTGGTGGTTTCACTATCAACAAGGATCC
GCTCCTTCGCCGTAACGGACAGCAGCCAACTGAGGCGATGCAAAAGGTCC
TTGCAGGTGCCATGAACGACGCCAAGGCTATGGTGGATCGGCGCTTAGCT
AAATCCTCAAAGACCTTGACCCCAAAGATCGTTGAGGAGGCGTTGAACCT
CCTGCGTGGTGGTGTCACTATTGTATATCCCATGCAATTGCCGCCCCACG
ACTCCATACGCATGGAGTTCACCAATACCGAGGATCTGACTGGCACCCAG
GCCTCCAAGGAGGTCATCGAACCGTCCAAGGCTCAGTTCTGGTTTGCAGG
ACACCAGATGCTGATGGGGAAGCTAATGAGCGACTATTTGGGTCACAACG
ACAAAACCAAGGTGGTCGTGAAGCTGAATCAAATTGGTGAAGGACCACCG
GGACGCGAAGCCGTGATCTCCGATCCCTTGCGTCGCCAGATGATGGCCGA
GGCCTATCGCCGCCAGGAGGAACTCAAGAAACTTGAGCAAGACGATGACG
ACGAGTATCTCAACTCCTCCTGGGCCGACAGCGGCAGTCTGAAACGTCAG
GCGCATGGTCTGGAAAATGTTAGATTCCGATTCAGAAAATGAAAGCTTTC
TAGACCAT
BS14219.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18675-RA | 876 | CG18675-PA | 1..876 | 17..892 | 4320 | 99.5 | Plus |
tipE-RB | 1359 | CG1232-PB | 1295..1359 | 778..842 | 325 | 100 | Plus |
tipE-RA | 1359 | CG1232-PA | 1295..1359 | 778..842 | 325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18675-RA | 1608 | CG18675-RA | 66..945 | 13..892 | 4325 | 99.4 | Plus |
tipE-RB | 3938 | CG1232-RB | 2341..2455 | 778..892 | 575 | 100 | Plus |
tipE-RA | 3396 | CG1232-RA | 2487..2601 | 778..892 | 575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4173949..4174327 | 13..391 | 1835 | 98.9 | Plus |
3L | 28110227 | 3L | 4174393..4174665 | 391..663 | 1365 | 100 | Plus |
3L | 28110227 | 3L | 4174724..4174842 | 660..778 | 580 | 99.2 | Plus |
3L | 28110227 | 3L | 4192190..4192305 | 777..892 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:13:21 has no hits.
BS14219.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:46 Download gff for
BS14219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:29 Download gff for
BS14219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 101..969 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:19 Download gff for
BS14219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 70..938 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:46 Download gff for
BS14219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 88..978 | 5..896 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:30 Download gff for
BS14219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 70..938 | 17..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:30 Download gff for
BS14219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4174394..4174663 | 392..661 | 100 | -> | Plus |
3L | 4174726..4174842 | 662..778 | 99 | -> | Plus |
3L | 4192192..4192298 | 779..885 | 100 | | Plus |
3L | 4173953..4174327 | 17..391 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:19 Download gff for
BS14219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4174726..4174842 | 662..778 | 99 | -> | Plus |
arm_3L | 4192192..4192298 | 779..885 | 100 | | Plus |
arm_3L | 4173953..4174327 | 17..391 | 99 | -> | Plus |
arm_3L | 4174394..4174663 | 392..661 | 100 | -> | Plus |
BS14219.pep Sequence
Translation from 16 to 891
> BS14219.pep
MVLLQVKRGDELIFLYETSVKEKTDTVLRELVALHNGQLKIQRVCMEIEE
LAEHGTMVPPEMIGLNEEQREELKLKDVWADKCIPSGGFTINKDPLLRRN
GQQPTEAMQKVLAGAMNDAKAMVDRRLAKSSKTLTPKIVEEALNLLRGGV
TIVYPMQLPPHDSIRMEFTNTEDLTGTQASKEVIEPSKAQFWFAGHQMLM
GKLMSDYLGHNDKTKVVVKLNQIGEGPPGREAVISDPLRRQMMAEAYRRQ
EELKKLEQDDDDEYLNSSWADSGSLKRQAHGLENVRFRFRK*
BS14219.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18675-PA | 291 | CG18675-PA | 1..291 | 1..291 | 1495 | 100 | Plus |