Clone BS14219 Report

Search the DGRC for BS14219

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG18675-RA
Protein status:BS14219.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14219.3prime Sequence

598 bp (488 high quality bases) assembled on 2006-10-13

> BS14219.3prime
ATGGTCTAGAAAGCTTTCATTTTCTGAATCGGAATCTAACATTTTCCAGA
CCATGCGCCTGACGTTTCAGACTGCCGCTGTCGGCCCAGGAGGAGTTGAG
ATACTCGTCGTCATCGTCTTGCTCAAGTTTCTTGAGTTCCTCCTGGCGGC
GATAGGCCTCGGCCATCATCTGGCGACGCAAGGGATCGGAGATCACGGCT
TCGCGTCCCGGTGGTCCTTCACCAATTTGATTCAGCTTCACGACCACCTT
GGTTTTGTCGTTGTGACCCAAATAGTCGCTCATTAGCTTCCCCATCAGCA
TCTGGTGTCCTGCAAACCAGAACTGAGCCTTGGACGGTTCGATGACCTCC
TTGGAGGCCTGGGTGCCAGTCAGATCCTCGGTATTGGTGAACTCCATGCG
TATGGAGTCGTGGGGCGGCAATTGCATGGGATATACAATAGTGACACCAC
CACGCAGGAGGTTCAACGCCTCCTCAACGATCTTTGGGGTCAAGGTCTTT
GAGGATTTACCTAAGCGCCGATCCACCATAGCCTTGGCGTCGTTCATGGC
ACCTGCCAGGACCTTTTGCATCGCCTCAGTTGGGTGCTGTCCGTTACG

BS14219.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG18675-PA 876 CG18675-RA 295..876 598..17 2835 99.4 Minus
CG1232-PA 1359 tipE-RA 1295..1359 131..67 325 100 Minus
CG1232-PB 1359 tipE-RB 1295..1359 131..67 325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG18675-RA 1608 CG18675-RA 364..945 598..17 2865 99.5 Minus
tipE-RB 3938 CG1232-RB 2341..2455 131..17 575 100 Minus
tipE-RA 3396 CG1232-RA 2487..2601 131..17 575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4174393..4174665 518..246 1350 99.6 Minus
3L 28110227 3L 4174724..4174842 249..131 580 99.2 Minus
3L 28110227 3L 4192190..4192305 132..17 580 100 Minus
3L 28110227 3L 4174247..4174327 598..518 390 98.8 Minus
Blast to na_te.dros performed on 2015-01-31 10:03:21 has no hits.

BS14219.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:12 Download gff for BS14219.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18675-PA 295..876 17..598 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:05 Download gff for BS14219.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 364..947 13..598 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:50 Download gff for BS14219.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 364..947 13..598 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:50 Download gff for BS14219.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4174247..4174327 518..598 98 -> Minus
3L 4174394..4174663 248..517 99 -> Minus
3L 4174726..4174842 131..247 99 -> Minus
3L 4192192..4192307 13..130 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:05 Download gff for BS14219.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4174247..4174327 518..598 98 -> Minus
arm_3L 4174394..4174663 248..517 99 -> Minus
arm_3L 4174726..4174842 131..247 99 -> Minus
arm_3L 4192192..4192307 13..130 98   Minus

BS14219.5prime Sequence

552 bp (486 high quality bases) assembled on 2006-10-13

> BS14219.5prime
GAAGTTATCAGTCGACATGGTGCTTCTCCAGGTGAAACGCGGAGACGAGC
TTATCTTCCTCTATGAGACAAGCGTTAAGGAGAAGACCGATACTGTGCTT
CGCGAGCTTGTGGCTCTGCACAATGGTCAACTGAAGATTCAGCGTGTCTG
CATGGAGATTGAGGAGCTGGCCGAACATGGCACCATGGTGCCGCCTGAAA
TGATTGGCCTCAACGAGGAACAGAGGGAAGAGCTCAAGCTTAAGGATGTC
TGGGCGGATAAGTGCATCCCGTCTGGTGGTTTCACTATCAACAAGGATCC
GCTCCTTCGCCGTAACGGACAGCAGCCAACTGAGGCGATGCAAAAGGTCC
TTGCAGGTGCCATGAACGACGCCAAGGCTATGGTGGATCGGCGCTTAGCT
AAATCCTCAAAGACCTTGACCCCAAAGATCGTTGAGGAGGCGTTGAACCT
CCTGCGTGGTGGTGTCACTATTGTATATCCCATGCAATTGCCGCCCCACG
ACTCCATACGCATGGAGTTCACCAATACCGAGGATCTGACTGGCACCCCA
GC

BS14219.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG18675-PA 876 CG18675-RA 1..532 17..548 2585 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG18675-RA 1608 CG18675-RA 66..601 13..548 2620 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4173949..4174327 13..391 1835 98.9 Plus
3L 28110227 3L 4174393..4174550 391..548 790 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:47:42 has no hits.

BS14219.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:12 Download gff for BS14219.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18675-PA 1..534 17..552 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:46 Download gff for BS14219.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 57..603 5..552 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:27 Download gff for BS14219.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 57..603 5..552 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:27 Download gff for BS14219.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4173940..4174327 5..391 98 -> Plus
3L 4174394..4174552 392..552 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:46 Download gff for BS14219.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4173940..4174327 5..391 98 -> Plus
arm_3L 4174394..4174552 392..552 98   Plus

BS14219.complete Sequence

908 bp assembled on 2006-11-01

GenBank Submission: FJ637618

> BS14219.complete
GAAGTTATCAGTCGACATGGTGCTTCTCCAGGTGAAACGCGGAGACGAGC
TTATCTTCCTCTATGAGACAAGCGTTAAGGAGAAGACCGATACTGTGCTT
CGCGAGCTTGTGGCTCTGCACAATGGTCAACTGAAGATTCAGCGTGTCTG
CATGGAGATTGAGGAGCTGGCCGAACATGGCACCATGGTGCCGCCTGAAA
TGATTGGCCTCAACGAGGAACAGAGGGAAGAGCTCAAGCTTAAGGATGTC
TGGGCGGATAAGTGCATCCCGTCTGGTGGTTTCACTATCAACAAGGATCC
GCTCCTTCGCCGTAACGGACAGCAGCCAACTGAGGCGATGCAAAAGGTCC
TTGCAGGTGCCATGAACGACGCCAAGGCTATGGTGGATCGGCGCTTAGCT
AAATCCTCAAAGACCTTGACCCCAAAGATCGTTGAGGAGGCGTTGAACCT
CCTGCGTGGTGGTGTCACTATTGTATATCCCATGCAATTGCCGCCCCACG
ACTCCATACGCATGGAGTTCACCAATACCGAGGATCTGACTGGCACCCAG
GCCTCCAAGGAGGTCATCGAACCGTCCAAGGCTCAGTTCTGGTTTGCAGG
ACACCAGATGCTGATGGGGAAGCTAATGAGCGACTATTTGGGTCACAACG
ACAAAACCAAGGTGGTCGTGAAGCTGAATCAAATTGGTGAAGGACCACCG
GGACGCGAAGCCGTGATCTCCGATCCCTTGCGTCGCCAGATGATGGCCGA
GGCCTATCGCCGCCAGGAGGAACTCAAGAAACTTGAGCAAGACGATGACG
ACGAGTATCTCAACTCCTCCTGGGCCGACAGCGGCAGTCTGAAACGTCAG
GCGCATGGTCTGGAAAATGTTAGATTCCGATTCAGAAAATGAAAGCTTTC
TAGACCAT

BS14219.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG18675-RA 876 CG18675-PA 1..876 17..892 4320 99.5 Plus
tipE-RB 1359 CG1232-PB 1295..1359 778..842 325 100 Plus
tipE-RA 1359 CG1232-PA 1295..1359 778..842 325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG18675-RA 1608 CG18675-RA 66..945 13..892 4325 99.4 Plus
tipE-RB 3938 CG1232-RB 2341..2455 778..892 575 100 Plus
tipE-RA 3396 CG1232-RA 2487..2601 778..892 575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4173949..4174327 13..391 1835 98.9 Plus
3L 28110227 3L 4174393..4174665 391..663 1365 100 Plus
3L 28110227 3L 4174724..4174842 660..778 580 99.2 Plus
3L 28110227 3L 4192190..4192305 777..892 580 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:13:21 has no hits.

BS14219.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:46 Download gff for BS14219.complete
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 1..876 17..892 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:29 Download gff for BS14219.complete
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 101..969 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:19 Download gff for BS14219.complete
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 70..938 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:46 Download gff for BS14219.complete
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 88..978 5..896 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:30 Download gff for BS14219.complete
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 70..938 17..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:30 Download gff for BS14219.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4174394..4174663 392..661 100 -> Plus
3L 4174726..4174842 662..778 99 -> Plus
3L 4192192..4192298 779..885 100   Plus
3L 4173953..4174327 17..391 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:19 Download gff for BS14219.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4174726..4174842 662..778 99 -> Plus
arm_3L 4192192..4192298 779..885 100   Plus
arm_3L 4173953..4174327 17..391 99 -> Plus
arm_3L 4174394..4174663 392..661 100 -> Plus

BS14219.pep Sequence

Translation from 16 to 891

> BS14219.pep
MVLLQVKRGDELIFLYETSVKEKTDTVLRELVALHNGQLKIQRVCMEIEE
LAEHGTMVPPEMIGLNEEQREELKLKDVWADKCIPSGGFTINKDPLLRRN
GQQPTEAMQKVLAGAMNDAKAMVDRRLAKSSKTLTPKIVEEALNLLRGGV
TIVYPMQLPPHDSIRMEFTNTEDLTGTQASKEVIEPSKAQFWFAGHQMLM
GKLMSDYLGHNDKTKVVVKLNQIGEGPPGREAVISDPLRRQMMAEAYRRQ
EELKKLEQDDDDEYLNSSWADSGSLKRQAHGLENVRFRFRK*

BS14219.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG18675-PA 291 CG18675-PA 1..291 1..291 1495 100 Plus