Clone BS14220 Report

Search the DGRC for BS14220

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:20
Vector:pDNR-Dual
Associated Gene/Transcriptkdn-RB
Protein status:BS14220.pep: full length peptide match
Sequenced Size:1601

Clone Sequence Records

BS14220.complete Sequence

1601 bp assembled on 2009-12-07

GenBank Submission: KX802479

> BS14220.complete
GAAGTTATCAGTCGACATGTTCGTACGCCGTTTCGGAAATGGCTCTTTGG
GCCATCATTTTGCCTTTCAACGACGTTATTTGGCTAAAAATTCTATGTGG
GACTCGAAGTCCATTGGGACTCCAAGTTCATTCCGAATGCGTTCCAAAAA
GGATAACGTGACTGGCAATCTCAAGGAGCAGCAACAATCGGCGACTCCGG
AAACCTTGAACATGCCTGATATGCAGGATGCCCAAAAACTGCCAAATGTG
GGAGCCTATGTTCGCATGATCGCCGCCGATGGCAAGAGCCTGCGCGACGT
GCTGGCCGCCAAGGTGCCCCAGGAGCAGGAGCGCGTAAAGAACTTCCGCA
AGCAGCATGGCGCCACCAAGATGGGCGAGACGACCATCGACATGATGTAC
GGCGGCATGCGCGGCATCAAGGCCCTGGTCACCGAGACCTCGGTGCTGGA
TGCTGACGAGGGTATCCGCTTCCGCGGCCTCTCCATTCCCGAGTGCCAAA
AGGTTCTGCCAGCCGCCGATGGCGGCACTGAGCCCCTGCCCGAGGGTCTC
TTCTGGCTGCTGTTGACCGGCGAGGTGCCCACCAAGTCCCAGGTGCAGCA
GCTGTCCCGCGAATGGGCCGAGCGCGCCGCCCTGCCCCAGCACGTGGTCA
CCATGTTGAACAACATGCCCACCACCCTGCACCCGATGTCGCAGTTTGCT
GCCGCCGTCACTGCGCTGAATCACGACAGCAAATTCGCCAAGGCATACTC
GGATGGTGTGCACAAGAGCAAGTACTGGGAGTACGTCTACGAGGACAGCA
TGGACCTGATCGCCAAGCTCCCAGTGGTGGCGGCCACCATCTACTGCAAC
ACCTATCGCGGCGGCAAGGGCTCCCGTTCGATTGACTCCAGCCTGGATTG
GTCGGCGAACTTTGTGAAGATGCTCGGCTACGACAACGCCCCCTTCACCG
AGCTGATGCGTCTCTATCTGACCATCCACAGTGACCACGAGGGTGGCAAC
GTGTCTGCCCACACCGTTCACTTGGTGGGCTCCGCCCTCAGCGATCCCTA
CCTCTCCTTTGCCGCCGGTCTGAACGGTCTGGCTGGTCCCCTGCACGGAC
TGGCCAACCAGGAGGTGCTCGTGTGGCTGCGCAAGCTGCAGAAGGAGGCC
GGCAACAACCCGTCGGAGGAGCAGCTCAAGGAGTACATCTGGAAGACCCT
CAAGTCCGGACAGGTGGTTCCCGGCTACGGACACGCCGTGCTCCGCAAGA
CCGATCCCCGCTACACCTGCCAGCGTGAGTTCGCGCTGAAGCACCTGCCC
GAGGACGAGACGTTCCAGCTGGTGTCGAAGATCTACAAGGTGGTGCCACC
AATTCTGACCGAGACCGGCAAGGTGAAGAACCCCTGGCCCAATGTAGATG
CCCATTCCGGTGTGCTGCTGCAGTACTACGGCATGAAGGAGATGAACTAT
TACACCGTGTTGTTCGGCGTTTCCCGTGCCCTCGGCGTGCTGGCCTCCCT
CGTCTGGGATCGCGCCCTCGGCCTGCCCATCGAGCGCCCCAAGTCATTCT
CCACCGATCTGCTGGTCAAGATGGTCCAGAAGTAAAAGCTTTCTAGACCA
T

BS14220.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
kdn-RB 1569 CG3861-PB 1..1569 17..1585 7785 99.7 Plus
kdn-RA 1395 CG3861-PA 46..1395 236..1585 6690 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
kdn-RB 2636 CG3861-RB 108..1676 17..1585 7785 99.7 Plus
kdn-RA 2510 CG3861-RA 201..1550 236..1585 6690 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6358898..6359881 232..1215 4875 99.7 Plus
X 23542271 X 6359989..6360363 1211..1585 1845 99.5 Plus
X 23542271 X 6350736..6350954 17..235 1095 100 Plus
Blast to na_te.dros performed 2014-11-28 01:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 1569..1690 45..169 141 61.7 Plus

BS14220.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:55 Download gff for BS14220.complete
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 113..1674 22..1583 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:55 Download gff for BS14220.complete
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 113..1674 22..1583 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:12 Download gff for BS14220.complete
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 113..1674 22..1583 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:30 Download gff for BS14220.complete
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 113..1674 22..1583 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:30 Download gff for BS14220.complete
Subject Subject Range Query Range Percent Splice Strand
X 6350741..6350954 22..235 100 -> Plus
X 6358902..6359879 236..1213 99 -> Plus
X 6359992..6360361 1214..1583 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:55 Download gff for BS14220.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6244774..6244987 22..235 100 -> Plus
arm_X 6252935..6253912 236..1213 99 -> Plus
arm_X 6254025..6254394 1214..1583 99   Plus

BS14220.5prime Sequence

527 bp (522 high quality bases) assembled on 2006-10-13

> BS14220.5prime
GAAGTTATCAGTCGACATGTTCGTACGCCGTTTCGGAAATGGCTCTTTGG
GCCATCATTTTGCCTTTCAACGACGTTATTTGGCTAAAAATTCTATGTGG
GACTCGAAGTCCATTGGGACTCCAAGTTCATTCCGAATGCGTTCCAAAAA
GGATAACGTGACTGGCAATCTCAAGGAGCAGCAACAATCGGCGACTCCGG
AAACCTTGAACATGCCTGATATGCAGGATGCCCAAAAACTGCCAAATGTG
GGAGCCTATGTTCGCATGATCGCCGCCGATGGCAAGAGCCTGCGCGACGT
GCTGGCCGCCAAGGTGCCCCAGGAGCAGGAGCGCGTAAAGAACTTCCGCA
AGCAGCATGGCGCCACCAAGATGGGCGAGACGACCATCGACATGATGTAC
GGCGGCATGCGCGGCATCAAGGCCCTGGTCACCGAGACCTCGGTGCTGGA
TGCTGACGAGGGTATCCGCTTCCGCGGCCTCTCCATTCCCGAGTGCCAAA
AGGTTCTGCCAGCCGACGATGGCGGCA

BS14220.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3861-PB 1569 l(1)G0030-RB 1..511 17..527 2530 99.8 Plus
CG3861-PA 1395 l(1)G0030-RA 46..337 236..527 1435 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
kdn-RB 2636 CG3861-RB 108..618 17..527 2540 99.8 Plus
kdn-RA 2510 CG3861-RA 201..492 236..527 1445 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6358898..6359193 232..527 1450 99.3 Plus
X 23542271 X 6350736..6350954 17..235 1095 100 Plus
Blast to na_te.dros performed 2015-02-11 19:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 1569..1690 45..169 141 61.7 Plus

BS14220.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:13 Download gff for BS14220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3861-PB 1..510 17..526 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:37 Download gff for BS14220.5prime
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 101..617 10..526 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:00:59 Download gff for BS14220.5prime
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 101..617 10..526 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:00:59 Download gff for BS14220.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6350729..6350954 10..235 98 -> Plus
X 6358902..6359192 236..526 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:37 Download gff for BS14220.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6244762..6244987 10..235 98 -> Plus
arm_X 6252935..6253225 236..526 99   Plus

BS14220.3prime Sequence

599 bp (515 high quality bases) assembled on 2006-10-13

> BS14220.3prime
ATGGTCTAGAAAGCTTTTACTTCTGGACCATCTTGACCAGCAGATCGGTG
GAGAATGACTTGGGGCGCTCGATGGGCAGGCCGAGGGCGCGATCCCAGAC
GAGGGAGGCCAGCACGCCGAGGGCACGGGAAACGCCGAACAACACGGTGT
AATAGTTCATCTCCTTCATGCCGTAGTACTGCAGCAGCACACCGGAATGG
GCATCTACATTGGGCCAGGGGTTCTTCACCTTGCCGGTCTCGGTCAGAAT
TGGTGGCACCACCTTGTAGATCTTCGACACCAGCTGGAACGTCTCGTCCT
CGGGCAGGTGCTTCAGCGCGAACTCACGCTGGCAGGTGTAGCGGGGATCG
GTCTTGCGGAGCACGGCGTGTCCGTAGCCGGGAACCACCTGTCCGGACTT
GAGGGTCTTCCAGATGTACTCCTTGAGCTGCTCCTCCGACGGGTTGTTGC
CGGCCTCCTTCTGCAGCTTGCGCAGCCACACGAGCACCTCCTGGTTGGCC
AGTCCGTGCAGGGGACCAGCCAGACCGTTCAGACCGGCGGCAAAGGAGAG
GTATGGATCGCTGAGGGCGGAGCCCACCAAGTGAACGGTGTGGGCAGAC

BS14220.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3861-PB 1569 l(1)G0030-RB 987..1569 599..17 2790 99.1 Minus
CG3861-PA 1395 l(1)G0030-RA 813..1395 599..17 2790 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
kdn-RA 2510 CG3861-RA 968..1550 599..17 2840 99.1 Minus
kdn-RB 2636 CG3861-RB 1094..1676 599..17 2840 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6359989..6360363 391..17 1845 99.5 Minus
X 23542271 X 6359669..6359881 599..387 1020 98.6 Minus
Blast to na_te.dros performed on 2015-02-11 04:27:58 has no hits.

BS14220.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:12 Download gff for BS14220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3861-PA 813..1395 17..599 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:09:12 Download gff for BS14220.3prime
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 1094..1678 13..599 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:13:29 Download gff for BS14220.3prime
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 1094..1678 13..599 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:13:29 Download gff for BS14220.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6359669..6359879 389..599 98 -> Minus
X 6359992..6360365 13..388 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:09:12 Download gff for BS14220.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6253702..6253912 389..599 98 -> Minus
arm_X 6254025..6254398 13..388 98   Minus

BS14220.pep Sequence

Translation from 16 to 1584

> BS14220.pep
MFVRRFGNGSLGHHFAFQRRYLAKNSMWDSKSIGTPSSFRMRSKKDNVTG
NLKEQQQSATPETLNMPDMQDAQKLPNVGAYVRMIAADGKSLRDVLAAKV
PQEQERVKNFRKQHGATKMGETTIDMMYGGMRGIKALVTETSVLDADEGI
RFRGLSIPECQKVLPAADGGTEPLPEGLFWLLLTGEVPTKSQVQQLSREW
AERAALPQHVVTMLNNMPTTLHPMSQFAAAVTALNHDSKFAKAYSDGVHK
SKYWEYVYEDSMDLIAKLPVVAATIYCNTYRGGKGSRSIDSSLDWSANFV
KMLGYDNAPFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAA
GLNGLAGPLHGLANQEVLVWLRKLQKEAGNNPSEEQLKEYIWKTLKSGQV
VPGYGHAVLRKTDPRYTCQREFALKHLPEDETFQLVSKIYKVVPPILTET
GKVKNPWPNVDAHSGVLLQYYGMKEMNYYTVLFGVSRALGVLASLVWDRA
LGLPIERPKSFSTDLLVKMVQK*

BS14220.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
kdn-PB 522 CG3861-PB 1..522 1..522 2731 100 Plus
kdn-PA 464 CG3861-PA 11..464 69..522 2359 99.3 Plus
CG14740-PA 478 CG14740-PA 30..464 89..522 1248 52.6 Plus