Clone Sequence Records
BS14220.complete Sequence
1601 bp assembled on 2009-12-07
GenBank Submission: KX802479
> BS14220.complete
GAAGTTATCAGTCGACATGTTCGTACGCCGTTTCGGAAATGGCTCTTTGG
GCCATCATTTTGCCTTTCAACGACGTTATTTGGCTAAAAATTCTATGTGG
GACTCGAAGTCCATTGGGACTCCAAGTTCATTCCGAATGCGTTCCAAAAA
GGATAACGTGACTGGCAATCTCAAGGAGCAGCAACAATCGGCGACTCCGG
AAACCTTGAACATGCCTGATATGCAGGATGCCCAAAAACTGCCAAATGTG
GGAGCCTATGTTCGCATGATCGCCGCCGATGGCAAGAGCCTGCGCGACGT
GCTGGCCGCCAAGGTGCCCCAGGAGCAGGAGCGCGTAAAGAACTTCCGCA
AGCAGCATGGCGCCACCAAGATGGGCGAGACGACCATCGACATGATGTAC
GGCGGCATGCGCGGCATCAAGGCCCTGGTCACCGAGACCTCGGTGCTGGA
TGCTGACGAGGGTATCCGCTTCCGCGGCCTCTCCATTCCCGAGTGCCAAA
AGGTTCTGCCAGCCGCCGATGGCGGCACTGAGCCCCTGCCCGAGGGTCTC
TTCTGGCTGCTGTTGACCGGCGAGGTGCCCACCAAGTCCCAGGTGCAGCA
GCTGTCCCGCGAATGGGCCGAGCGCGCCGCCCTGCCCCAGCACGTGGTCA
CCATGTTGAACAACATGCCCACCACCCTGCACCCGATGTCGCAGTTTGCT
GCCGCCGTCACTGCGCTGAATCACGACAGCAAATTCGCCAAGGCATACTC
GGATGGTGTGCACAAGAGCAAGTACTGGGAGTACGTCTACGAGGACAGCA
TGGACCTGATCGCCAAGCTCCCAGTGGTGGCGGCCACCATCTACTGCAAC
ACCTATCGCGGCGGCAAGGGCTCCCGTTCGATTGACTCCAGCCTGGATTG
GTCGGCGAACTTTGTGAAGATGCTCGGCTACGACAACGCCCCCTTCACCG
AGCTGATGCGTCTCTATCTGACCATCCACAGTGACCACGAGGGTGGCAAC
GTGTCTGCCCACACCGTTCACTTGGTGGGCTCCGCCCTCAGCGATCCCTA
CCTCTCCTTTGCCGCCGGTCTGAACGGTCTGGCTGGTCCCCTGCACGGAC
TGGCCAACCAGGAGGTGCTCGTGTGGCTGCGCAAGCTGCAGAAGGAGGCC
GGCAACAACCCGTCGGAGGAGCAGCTCAAGGAGTACATCTGGAAGACCCT
CAAGTCCGGACAGGTGGTTCCCGGCTACGGACACGCCGTGCTCCGCAAGA
CCGATCCCCGCTACACCTGCCAGCGTGAGTTCGCGCTGAAGCACCTGCCC
GAGGACGAGACGTTCCAGCTGGTGTCGAAGATCTACAAGGTGGTGCCACC
AATTCTGACCGAGACCGGCAAGGTGAAGAACCCCTGGCCCAATGTAGATG
CCCATTCCGGTGTGCTGCTGCAGTACTACGGCATGAAGGAGATGAACTAT
TACACCGTGTTGTTCGGCGTTTCCCGTGCCCTCGGCGTGCTGGCCTCCCT
CGTCTGGGATCGCGCCCTCGGCCTGCCCATCGAGCGCCCCAAGTCATTCT
CCACCGATCTGCTGGTCAAGATGGTCCAGAAGTAAAAGCTTTCTAGACCA
T
BS14220.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kdn-RB | 1569 | CG3861-PB | 1..1569 | 17..1585 | 7785 | 99.7 | Plus |
kdn-RA | 1395 | CG3861-PA | 46..1395 | 236..1585 | 6690 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kdn-RB | 2636 | CG3861-RB | 108..1676 | 17..1585 | 7785 | 99.7 | Plus |
kdn-RA | 2510 | CG3861-RA | 201..1550 | 236..1585 | 6690 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6358898..6359881 | 232..1215 | 4875 | 99.7 | Plus |
X | 23542271 | X | 6359989..6360363 | 1211..1585 | 1845 | 99.5 | Plus |
X | 23542271 | X | 6350736..6350954 | 17..235 | 1095 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:54:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 1569..1690 | 45..169 | 141 | 61.7 | Plus |
BS14220.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:55 Download gff for
BS14220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kdn-RB | 113..1674 | 22..1583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:55 Download gff for
BS14220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kdn-RB | 113..1674 | 22..1583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:12 Download gff for
BS14220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kdn-RB | 113..1674 | 22..1583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:30 Download gff for
BS14220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kdn-RB | 113..1674 | 22..1583 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:30 Download gff for
BS14220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6350741..6350954 | 22..235 | 100 | -> | Plus |
X | 6358902..6359879 | 236..1213 | 99 | -> | Plus |
X | 6359992..6360361 | 1214..1583 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:55 Download gff for
BS14220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6244774..6244987 | 22..235 | 100 | -> | Plus |
arm_X | 6252935..6253912 | 236..1213 | 99 | -> | Plus |
arm_X | 6254025..6254394 | 1214..1583 | 99 | | Plus |
BS14220.5prime Sequence
527 bp (522 high quality bases) assembled on 2006-10-13
> BS14220.5prime
GAAGTTATCAGTCGACATGTTCGTACGCCGTTTCGGAAATGGCTCTTTGG
GCCATCATTTTGCCTTTCAACGACGTTATTTGGCTAAAAATTCTATGTGG
GACTCGAAGTCCATTGGGACTCCAAGTTCATTCCGAATGCGTTCCAAAAA
GGATAACGTGACTGGCAATCTCAAGGAGCAGCAACAATCGGCGACTCCGG
AAACCTTGAACATGCCTGATATGCAGGATGCCCAAAAACTGCCAAATGTG
GGAGCCTATGTTCGCATGATCGCCGCCGATGGCAAGAGCCTGCGCGACGT
GCTGGCCGCCAAGGTGCCCCAGGAGCAGGAGCGCGTAAAGAACTTCCGCA
AGCAGCATGGCGCCACCAAGATGGGCGAGACGACCATCGACATGATGTAC
GGCGGCATGCGCGGCATCAAGGCCCTGGTCACCGAGACCTCGGTGCTGGA
TGCTGACGAGGGTATCCGCTTCCGCGGCCTCTCCATTCCCGAGTGCCAAA
AGGTTCTGCCAGCCGACGATGGCGGCA
BS14220.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3861-PB | 1569 | l(1)G0030-RB | 1..511 | 17..527 | 2530 | 99.8 | Plus |
CG3861-PA | 1395 | l(1)G0030-RA | 46..337 | 236..527 | 1435 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kdn-RB | 2636 | CG3861-RB | 108..618 | 17..527 | 2540 | 99.8 | Plus |
kdn-RA | 2510 | CG3861-RA | 201..492 | 236..527 | 1445 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6358898..6359193 | 232..527 | 1450 | 99.3 | Plus |
X | 23542271 | X | 6350736..6350954 | 17..235 | 1095 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 19:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 1569..1690 | 45..169 | 141 | 61.7 | Plus |
BS14220.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:13 Download gff for
BS14220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3861-PB | 1..510 | 17..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:37 Download gff for
BS14220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kdn-RB | 101..617 | 10..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:00:59 Download gff for
BS14220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kdn-RB | 101..617 | 10..526 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:00:59 Download gff for
BS14220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6350729..6350954 | 10..235 | 98 | -> | Plus |
X | 6358902..6359192 | 236..526 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:37 Download gff for
BS14220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6244762..6244987 | 10..235 | 98 | -> | Plus |
arm_X | 6252935..6253225 | 236..526 | 99 | | Plus |
BS14220.3prime Sequence
599 bp (515 high quality bases) assembled on 2006-10-13
> BS14220.3prime
ATGGTCTAGAAAGCTTTTACTTCTGGACCATCTTGACCAGCAGATCGGTG
GAGAATGACTTGGGGCGCTCGATGGGCAGGCCGAGGGCGCGATCCCAGAC
GAGGGAGGCCAGCACGCCGAGGGCACGGGAAACGCCGAACAACACGGTGT
AATAGTTCATCTCCTTCATGCCGTAGTACTGCAGCAGCACACCGGAATGG
GCATCTACATTGGGCCAGGGGTTCTTCACCTTGCCGGTCTCGGTCAGAAT
TGGTGGCACCACCTTGTAGATCTTCGACACCAGCTGGAACGTCTCGTCCT
CGGGCAGGTGCTTCAGCGCGAACTCACGCTGGCAGGTGTAGCGGGGATCG
GTCTTGCGGAGCACGGCGTGTCCGTAGCCGGGAACCACCTGTCCGGACTT
GAGGGTCTTCCAGATGTACTCCTTGAGCTGCTCCTCCGACGGGTTGTTGC
CGGCCTCCTTCTGCAGCTTGCGCAGCCACACGAGCACCTCCTGGTTGGCC
AGTCCGTGCAGGGGACCAGCCAGACCGTTCAGACCGGCGGCAAAGGAGAG
GTATGGATCGCTGAGGGCGGAGCCCACCAAGTGAACGGTGTGGGCAGAC
BS14220.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3861-PB | 1569 | l(1)G0030-RB | 987..1569 | 599..17 | 2790 | 99.1 | Minus |
CG3861-PA | 1395 | l(1)G0030-RA | 813..1395 | 599..17 | 2790 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:28:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kdn-RA | 2510 | CG3861-RA | 968..1550 | 599..17 | 2840 | 99.1 | Minus |
kdn-RB | 2636 | CG3861-RB | 1094..1676 | 599..17 | 2840 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6359989..6360363 | 391..17 | 1845 | 99.5 | Minus |
X | 23542271 | X | 6359669..6359881 | 599..387 | 1020 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:27:58 has no hits.
BS14220.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:12 Download gff for
BS14220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3861-PA | 813..1395 | 17..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:09:12 Download gff for
BS14220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kdn-RB | 1094..1678 | 13..599 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:13:29 Download gff for
BS14220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kdn-RB | 1094..1678 | 13..599 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:13:29 Download gff for
BS14220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6359669..6359879 | 389..599 | 98 | -> | Minus |
X | 6359992..6360365 | 13..388 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:09:12 Download gff for
BS14220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6253702..6253912 | 389..599 | 98 | -> | Minus |
arm_X | 6254025..6254398 | 13..388 | 98 | | Minus |
BS14220.pep Sequence
Translation from 16 to 1584
> BS14220.pep
MFVRRFGNGSLGHHFAFQRRYLAKNSMWDSKSIGTPSSFRMRSKKDNVTG
NLKEQQQSATPETLNMPDMQDAQKLPNVGAYVRMIAADGKSLRDVLAAKV
PQEQERVKNFRKQHGATKMGETTIDMMYGGMRGIKALVTETSVLDADEGI
RFRGLSIPECQKVLPAADGGTEPLPEGLFWLLLTGEVPTKSQVQQLSREW
AERAALPQHVVTMLNNMPTTLHPMSQFAAAVTALNHDSKFAKAYSDGVHK
SKYWEYVYEDSMDLIAKLPVVAATIYCNTYRGGKGSRSIDSSLDWSANFV
KMLGYDNAPFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAA
GLNGLAGPLHGLANQEVLVWLRKLQKEAGNNPSEEQLKEYIWKTLKSGQV
VPGYGHAVLRKTDPRYTCQREFALKHLPEDETFQLVSKIYKVVPPILTET
GKVKNPWPNVDAHSGVLLQYYGMKEMNYYTVLFGVSRALGVLASLVWDRA
LGLPIERPKSFSTDLLVKMVQK*
BS14220.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kdn-PB | 522 | CG3861-PB | 1..522 | 1..522 | 2731 | 100 | Plus |
kdn-PA | 464 | CG3861-PA | 11..464 | 69..522 | 2359 | 99.3 | Plus |
CG14740-PA | 478 | CG14740-PA | 30..464 | 89..522 | 1248 | 52.6 | Plus |