Clone Sequence Records
BS14221.3prime Sequence
794 bp (684 high quality bases) assembled on 2006-10-13
> BS14221.3prime
ATGGTCTAGAAAGCTTTTAGAGATGAGGAGCCGGTGGTGGCGGTTCGGGG
CACTCCTCCATTTCCGTTTCCGATTCGCAGGGACACGCCTCCATCTCATC
GATGGCACAGCCCTCCTCCTCACAAACGCCCGCATCCGGTCCGGATGGTT
CCGATTCAGGTTCCTTGTAGCCGGCATAGATCTCGGCACGCTGCTTGATA
ATCTCCTGAATGATGGCGGTGAGAATCTCGCGCGAGTCCACTATATGGCC
CACTTCCTCGGCCACCTCGGCGGACAACCACGGGCAGACGCTCTTCATAA
GCTGCTCCTTCTTAACGGCATCGCTGGCCGGCTCAATGTTCTCCAGCACC
TCCGGCACCAGACTGGCAATGTGTCCCTGGAGCAACTTGGCCGCCGTCAC
GCTCTTCTGCATCTCAGCGTCCAGCTCCTTGGCAATCGCATCCTGTCGCA
GGCGACGCTCCTTCTCCGCCTGCAAGCGCAGCTCCTCAGCTTCCAAGCGG
CGCAGCTCGGCCAGTTCCGCCTCCCTCTGGGCCAGGAATTCTTCCTGTTT
GCGTCGCAGACTGGACAGTTCCATCTCGTGAGCCACCTCCAGCATGCTTT
GTTCAATGCAGGCGTCCACCAGGACATCGATGATTGGCTGCGCCTCGGCA
TCGAAGTGGAAGAGTTCGCCCTCACCGATCTCGGTGGCCACATCCACGCC
CACCTTGGCCGGTATGAACGGAGGCGTCGGTGGCTTCTCAAGGAACAGGT
CCGTCTGCGTGTCGATGGTGAACTCCGGCGGACGCTGGCACCCA
BS14221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32392-PA | 1236 | CG32392-RA | 466..1236 | 787..17 | 3730 | 99.3 | Minus |
CG32392-PB | 1980 | CG32392-RB | 1210..1980 | 787..17 | 3730 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32392-RB | 2507 | CG32392-RB | 1434..2204 | 787..17 | 3780 | 99.4 | Minus |
CG32392-RA | 1657 | CG32392-RA | 584..1354 | 787..17 | 3780 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6756932..6757454 | 17..539 | 2570 | 99.4 | Plus |
3L | 28110227 | 3L | 6757519..6757766 | 540..787 | 1210 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:10:09 has no hits.
BS14221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:13 Download gff for
BS14221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32392-PB | 1205..1980 | 17..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:45 Download gff for
BS14221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32392-RA | 579..1360 | 11..793 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:15 Download gff for
BS14221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32392-RA | 579..1360 | 11..793 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:15 Download gff for
BS14221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6756926..6757454 | 11..539 | 98 | <- | Plus |
3L | 6757519..6757770 | 540..793 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:45 Download gff for
BS14221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6750026..6750554 | 11..539 | 98 | <- | Plus |
arm_3L | 6750619..6750870 | 540..793 | 98 | | Plus |
BS14221.5prime Sequence
735 bp (642 high quality bases) assembled on 2006-10-13
> BS14221.5prime
GAAGTTATCAGTCGACATGCCGACGATCCCGAAGAGGGATTACAAACCCA
ATGGTGGTGGCAAAAGCTCAGGAATGGATTTCCTCAGTTCCGGCATCAAG
GGAACCGAGGTCACCGAGATGCAGCTCAAGTGGCACGAGAATCCTTGTCC
AGCGCCACCATGCAAACAGGCATTTTGGTGGGCCAGTCATCCCAAGCCGA
TCAAAATCAAAGGTTGCCCCAAACCCGTCGTCCCGCCGCCGGAACCCTAC
AAGAACGTCATGTACGACCGTCGCGTCATAAAGGGCAGCAACTTCGGCAA
CGCCTCTCTGGTGACGGATGTGGATCCCTTCGACAAGGCCGCCGAATTGA
GGCGTCGCAATATGTTGCGCAAACGGACGATGCAGTGCCGCAATCAGAGA
AATGTCCTGGGCACACCGCCGCCGGTCAAGGGGCGGAAGCACGAGACCAT
ACAGACGGAGAAGTATCTGGAGAAGTTGGTGCAGCGTCCGCCGGAGTTCA
CCATCGACACGCAGACGGACCTGTTCCTCGAGAAGCCACCGACGCCTCCG
TTCATACCGGCCAAGGTGGGCGTGGATGTGGCCACCGAGATCGGTGAGGG
CGAACTCTTCCACTTCGATGCCGAGGCGCAGCCAATCATCGATGTCCTGG
TGGACGCCTGCTTTGAACAAAGCATGCTGGAGGTGGCTCACGAGATGGAC
CTGTCCAGTCTGCGACGCAAACAGGAAGAATTCCT
BS14221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32392-PA | 1236 | CG32392-RA | 1..719 | 17..735 | 3495 | 99.4 | Plus |
CG32392-PB | 1980 | CG32392-RB | 951..1463 | 223..735 | 2490 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32392-RA | 1657 | CG32392-RA | 119..837 | 17..735 | 3535 | 99.4 | Plus |
CG32392-RB | 2507 | CG32392-RB | 1175..1687 | 223..735 | 2520 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6757519..6757935 | 729..313 | 2040 | 99.3 | Minus |
3L | 28110227 | 3L | 6762923..6763128 | 222..17 | 1015 | 99.5 | Minus |
3L | 28110227 | 3L | 6758020..6758110 | 313..223 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:39:00 has no hits.
BS14221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:13 Download gff for
BS14221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32392-PA | 1..719 | 17..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:46 Download gff for
BS14221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32392-RA | 115..837 | 10..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:13 Download gff for
BS14221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32392-RA | 115..837 | 10..735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:13 Download gff for
BS14221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6757513..6757934 | 314..735 | 98 | <- | Minus |
3L | 6758020..6758110 | 223..313 | 100 | <- | Minus |
3L | 6762923..6763132 | 10..222 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:46 Download gff for
BS14221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6750613..6751034 | 314..735 | 98 | <- | Minus |
arm_3L | 6751120..6751210 | 223..313 | 100 | <- | Minus |
arm_3L | 6756023..6756232 | 10..222 | 98 | | Minus |
BS14221.complete Sequence
1268 bp assembled on 2006-11-01
GenBank Submission: FJ637619
> BS14221.complete
GAAGTTATCAGTCGACATGCCGACGATCCCGAAGAGGGATTACAAACCCA
ATGGTGGTGGCAAAAGCTCAGGAATGGATTTCCTCAGTTCCGGCATCAAG
GGAACCGAGGTCACCGAGATGCAGCTCAAGTGGCACGAGAATCCTTGTCC
AGCGCCACCATGCAAACAGGCATTTTGGTGGGCCAGTCATCCCAAGCCGA
TCAAAATCAAAGGTTGCCCCAAACCCGTCGTCCCGCCGCCGGAACCCTAC
AAGAACGTCATGTACGACCGTCGCGTCATAAAGGGCAGCAACTTCGGCAA
CGCCTCTCTGGTGACGGATGTGGATCCCTTCGACAAGGCCGCCGAATTGA
GGCGTCGCAATATGTTGCGCAAACGGACGATGCAGTGCCGCAATCAGAGA
AATGTCCTGGGCACACCGCCGCCGGTCAAGGGGCGGAAGCACGAGACCAT
ACAGACGGAGAAGTATCTGGAGAAGTTGGTGCAGCGTCCGCCGGAGTTCA
CCATCGACACGCAGACGGACCTGTTCCTCGAGAAGCCACCGACGCCTCCG
TTCATACCGGCCAAGGTGGGCGTGGATGTGGCCACCGAGATCGGTGAGGG
CGAACTCTTCCACTTCGATGCCGAGGCGCAGCCAATCATCGATGTCCTGG
TGGACGCCTGCATTGAACAAAGCATGCTGGAGGTGGCTCACGAGATGGAA
CTGTCCAGTCTGCGACGCAAACAGGAAGAATTCCTGGCCCAGAGGGAGGC
GGAACTGGCCGAGCTGCGCCGCTTGGAAGCTGAGGAGCTGCGCTTGCAGG
CGGAGAAGGAGCGTCGCCTGCGACAGGATGCGATTGCCAAGGAGCTGGAC
GCTGAGATGCAGAAGAGCGTGACGGCGGCCAAGTTGCTCCAGGGACACAT
TGCCAGTCTGGTGCCGGAGGTGCTGGAGAACATTGAGCCGGCCAGCGATG
CCGTTAAGAAGGAGCAGCTTATGAAGAGCGTCTGCCCGTGGTTGTCCGCC
GAGGTGGCCGAGGAAGTGGGCCATATAGTGGACTCGCGCGAGATTCTCAC
CGCCATCATTCAGGAGATTATCAAGCAGCGTGCCGAGATCTATGCCGGCT
ACAAGGAACCTGAATCGGAACCATCCGGACCGGATGCGGGCGTTTGTGAG
GAGGAGGGCTGTGCCATCGATGAGATGGAGGCGTGTCCCTGCGAATCGGA
AACGGAAATGGAGGAGTGCCCCGAACCGCCACCACCGGCTCCTCATCTCT
AAAAGCTTTCTAGACCAT
BS14221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32392-RA | 1236 | CG32392-PA | 1..1236 | 17..1252 | 6105 | 99.6 | Plus |
CG32392-RB | 1980 | CG32392-PB | 951..1980 | 223..1252 | 5090 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32392-RA | 1657 | CG32392-RA | 119..1354 | 17..1252 | 6105 | 99.6 | Plus |
CG32392-RB | 2507 | CG32392-RB | 1175..2204 | 223..1252 | 5090 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6756932..6757454 | 1252..730 | 2570 | 99.4 | Minus |
3L | 28110227 | 3L | 6757519..6757935 | 729..313 | 2070 | 99.8 | Minus |
3L | 28110227 | 3L | 6762923..6763128 | 222..17 | 1015 | 99.5 | Minus |
3L | 28110227 | 3L | 6758020..6758110 | 313..223 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:32:33 has no hits.
BS14221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:47 Download gff for
BS14221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32392-RA | 1..1236 | 17..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:03 Download gff for
BS14221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32392-RA | 115..1360 | 10..1258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:30 Download gff for
BS14221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32392-RA | 119..1352 | 17..1250 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:47 Download gff for
BS14221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32392-RA | 115..1360 | 10..1258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:56 Download gff for
BS14221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32392-RA | 119..1352 | 17..1250 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:56 Download gff for
BS14221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6756934..6757454 | 730..1250 | 99 | <- | Minus |
3L | 6757519..6757934 | 314..729 | 99 | <- | Minus |
3L | 6758020..6758110 | 223..313 | 100 | <- | Minus |
3L | 6762923..6763128 | 17..222 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:30 Download gff for
BS14221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6750034..6750554 | 730..1250 | 99 | <- | Minus |
arm_3L | 6750619..6751034 | 314..729 | 99 | <- | Minus |
arm_3L | 6751120..6751210 | 223..313 | 100 | <- | Minus |
arm_3L | 6756023..6756228 | 17..222 | 99 | | Minus |
BS14221.pep Sequence
Translation from 16 to 1251
> BS14221.pep
MPTIPKRDYKPNGGGKSSGMDFLSSGIKGTEVTEMQLKWHENPCPAPPCK
QAFWWASHPKPIKIKGCPKPVVPPPEPYKNVMYDRRVIKGSNFGNASLVT
DVDPFDKAAELRRRNMLRKRTMQCRNQRNVLGTPPPVKGRKHETIQTEKY
LEKLVQRPPEFTIDTQTDLFLEKPPTPPFIPAKVGVDVATEIGEGELFHF
DAEAQPIIDVLVDACIEQSMLEVAHEMELSSLRRKQEEFLAQREAELAEL
RRLEAEELRLQAEKERRLRQDAIAKELDAEMQKSVTAAKLLQGHIASLVP
EVLENIEPASDAVKKEQLMKSVCPWLSAEVAEEVGHIVDSREILTAIIQE
IIKQRAEIYAGYKEPESEPSGPDAGVCEEEGCAIDEMEACPCESETEMEE
CPEPPPPAPHL*
BS14221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32392-PA | 411 | CG32392-PA | 1..411 | 1..411 | 2164 | 100 | Plus |
CG32392-PB | 659 | CG32392-PB | 317..659 | 69..411 | 1765 | 99.7 | Plus |