Clone Sequence Records
BS14222.complete Sequence
794 bp assembled on 2010-02-09
GenBank Submission: KX800327
> BS14222.complete
GAAGTTATCAGTCGACATGAGTATGATACAAGAAGAGACCAAGGCCAGCG
TAATCAGCGTGGTAAAGCCGCCACCGAGTTGGGTGGAATGGTGCGAGCGG
AATGCCAAGCCGATCGAACGTCGGCTCATCAAGGAGAGGCGCTATCTAAC
CAGATGGCAAATTCCCGGACCGATGAAAAAGGCACAGTGGAGGGAGTTCT
ACGAGTGGGCAGCCTCCAGAGCCATGCCAAAGGAACTACCGGTGCCGGTC
AAACAGCCCATACCCTGTGTTGACAAGTTCTTGCCATGCGCCAGAAAACC
ACGCGCAATCGATCCGGACGAATTTCAGGAGAAGGTCGCCAAGTTGGCCA
CGCCACTGGAACGGAAAATGACGCCGAAGCATCAGTACATCTATCCGGTC
CAACCGTACTCCCCAATAATTGTCTGGGGTCAGCCGCCACTCCATGACAA
AGGACGACCCTTTAAGCCCCCTCAAAAACCCTGCTGCTTCTTCAATGCCG
ACATCGAGGACAAATGGTGGGCCGAACTGCGCTTTCCCATCCGCAAGGCT
GCTCTCAAAGCCAGGATAACTCCGCGCATCCTTAGCCTGTCGAAACCAAA
GATCACGCCTCAGTTCCCACCGCATTGCTATCATCCGGAGCATATATATG
ACGTGCTTAATGTCAAACCGCCACGGAGGAAGAAGTTTACTCCCCAGGGA
TGGCGTCTCCACCAGATCAGATTGCTATATCTTTCGAAGCCTGTGTCCCG
GCCCGAATACGAGTATTTTTATATGTAAAAGCTTTCTAGACCAT
BS14222.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3581-RA | 762 | CG3581-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3581-RA | 1033 | CG3581-RA | 131..893 | 16..778 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19373897..19374659 | 778..16 | 3815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:26:31 has no hits.
BS14222.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:16 Download gff for
BS14222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3581-RA | 92..851 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:23 Download gff for
BS14222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3581-RA | 132..891 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:54 Download gff for
BS14222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3581-RA | 92..851 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:51 Download gff for
BS14222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3581-RA | 132..891 | 17..776 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:51 Download gff for
BS14222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19373899..19374658 | 17..776 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:23 Download gff for
BS14222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15199621..15200380 | 17..776 | 100 | | Minus |
BS14222.5prime Sequence
516 bp (503 high quality bases) assembled on 2006-10-13
> BS14222.5prime
GAAGTTATCAGTCGACATGAGTATGATACAAGAAGAGACCAAGGCCAGCG
TAATCAGCGTGGTAAAGCCGCCACCGAGTTGGGTGGAATGGTGCGAGCGG
AATGCCAAGCCGATCGAACGTCGGCTCATCAAGGAGAGGCGCTATCTAAC
CAGATGGCAAATTCCCGGACCGATGAAAAAGGCACAGTGGAGGGAGTTCT
ACGAGTGGGCAGCCTCCAGAGCCATGCCAAAGGAACTACCGGTGCCGGTC
AAACAGCCCATACCCTGTGTTGACAAGTTCTTGCCATGCGCCAGAAAACC
ACGCGCAATCGATCCGGACGAATTTCAGGAGAAGGTCGCCAAGTTGGCCA
CGCCACTGGAACGGAAAATGACGCCGAAGCATCAGTACATCTATCCGGTC
CAACCGTACTCCCCAATAATTGTCTGGGGTCAGCCGCCACTCCATGAACA
AGGACGACCCTTTAAGCCCCCTCAAAAACCCTGCTGCTTCTTCAATGCCG
ACATCGAGGACAAATG
BS14222.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3581-PA | 762 | CG3581-RA | 1..500 | 17..516 | 2450 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3581-RA | 1033 | CG3581-RA | 131..631 | 16..516 | 2475 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19374159..19374659 | 516..16 | 2475 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:04:38 has no hits.
BS14222.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:14 Download gff for
BS14222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3581-PA | 1..500 | 17..516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:38 Download gff for
BS14222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3581-RA | 121..631 | 7..516 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:01:14 Download gff for
BS14222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3581-RA | 121..631 | 7..516 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:01:14 Download gff for
BS14222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19374159..19374669 | 7..516 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:38 Download gff for
BS14222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15199881..15200391 | 7..516 | 98 | | Minus |
BS14222.pep Sequence
Translation from 16 to 777
> BS14222.pep
MSMIQEETKASVISVVKPPPSWVEWCERNAKPIERRLIKERRYLTRWQIP
GPMKKAQWREFYEWAASRAMPKELPVPVKQPIPCVDKFLPCARKPRAIDP
DEFQEKVAKLATPLERKMTPKHQYIYPVQPYSPIIVWGQPPLHDKGRPFK
PPQKPCCFFNADIEDKWWAELRFPIRKAALKARITPRILSLSKPKITPQF
PPHCYHPEHIYDVLNVKPPRRKKFTPQGWRLHQIRLLYLSKPVSRPEYEY
FYM*
BS14222.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3581-PA | 253 | CG3581-PA | 1..253 | 1..253 | 1410 | 100 | Plus |
CG31404-PA | 274 | CG31404-PA | 30..274 | 4..251 | 605 | 50.8 | Plus |
CG31245-PA | 237 | CG31245-PA | 10..227 | 21..245 | 279 | 33.5 | Plus |