Clone BS14222 Report

Search the DGRC for BS14222

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG3581-RA
Protein status:BS14222.pep: full length peptide match
Sequenced Size:794

Clone Sequence Records

BS14222.complete Sequence

794 bp assembled on 2010-02-09

GenBank Submission: KX800327

> BS14222.complete
GAAGTTATCAGTCGACATGAGTATGATACAAGAAGAGACCAAGGCCAGCG
TAATCAGCGTGGTAAAGCCGCCACCGAGTTGGGTGGAATGGTGCGAGCGG
AATGCCAAGCCGATCGAACGTCGGCTCATCAAGGAGAGGCGCTATCTAAC
CAGATGGCAAATTCCCGGACCGATGAAAAAGGCACAGTGGAGGGAGTTCT
ACGAGTGGGCAGCCTCCAGAGCCATGCCAAAGGAACTACCGGTGCCGGTC
AAACAGCCCATACCCTGTGTTGACAAGTTCTTGCCATGCGCCAGAAAACC
ACGCGCAATCGATCCGGACGAATTTCAGGAGAAGGTCGCCAAGTTGGCCA
CGCCACTGGAACGGAAAATGACGCCGAAGCATCAGTACATCTATCCGGTC
CAACCGTACTCCCCAATAATTGTCTGGGGTCAGCCGCCACTCCATGACAA
AGGACGACCCTTTAAGCCCCCTCAAAAACCCTGCTGCTTCTTCAATGCCG
ACATCGAGGACAAATGGTGGGCCGAACTGCGCTTTCCCATCCGCAAGGCT
GCTCTCAAAGCCAGGATAACTCCGCGCATCCTTAGCCTGTCGAAACCAAA
GATCACGCCTCAGTTCCCACCGCATTGCTATCATCCGGAGCATATATATG
ACGTGCTTAATGTCAAACCGCCACGGAGGAAGAAGTTTACTCCCCAGGGA
TGGCGTCTCCACCAGATCAGATTGCTATATCTTTCGAAGCCTGTGTCCCG
GCCCGAATACGAGTATTTTTATATGTAAAAGCTTTCTAGACCAT

BS14222.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3581-RA 762 CG3581-PA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3581-RA 1033 CG3581-RA 131..893 16..778 3815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19373897..19374659 778..16 3815 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:26:31 has no hits.

BS14222.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:16 Download gff for BS14222.complete
Subject Subject Range Query Range Percent Splice Strand
CG3581-RA 92..851 17..776 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:23 Download gff for BS14222.complete
Subject Subject Range Query Range Percent Splice Strand
CG3581-RA 132..891 17..776 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:54 Download gff for BS14222.complete
Subject Subject Range Query Range Percent Splice Strand
CG3581-RA 92..851 17..776 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:51 Download gff for BS14222.complete
Subject Subject Range Query Range Percent Splice Strand
CG3581-RA 132..891 17..776 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:51 Download gff for BS14222.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19373899..19374658 17..776 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:23 Download gff for BS14222.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15199621..15200380 17..776 100   Minus

BS14222.5prime Sequence

516 bp (503 high quality bases) assembled on 2006-10-13

> BS14222.5prime
GAAGTTATCAGTCGACATGAGTATGATACAAGAAGAGACCAAGGCCAGCG
TAATCAGCGTGGTAAAGCCGCCACCGAGTTGGGTGGAATGGTGCGAGCGG
AATGCCAAGCCGATCGAACGTCGGCTCATCAAGGAGAGGCGCTATCTAAC
CAGATGGCAAATTCCCGGACCGATGAAAAAGGCACAGTGGAGGGAGTTCT
ACGAGTGGGCAGCCTCCAGAGCCATGCCAAAGGAACTACCGGTGCCGGTC
AAACAGCCCATACCCTGTGTTGACAAGTTCTTGCCATGCGCCAGAAAACC
ACGCGCAATCGATCCGGACGAATTTCAGGAGAAGGTCGCCAAGTTGGCCA
CGCCACTGGAACGGAAAATGACGCCGAAGCATCAGTACATCTATCCGGTC
CAACCGTACTCCCCAATAATTGTCTGGGGTCAGCCGCCACTCCATGAACA
AGGACGACCCTTTAAGCCCCCTCAAAAACCCTGCTGCTTCTTCAATGCCG
ACATCGAGGACAAATG

BS14222.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3581-PA 762 CG3581-RA 1..500 17..516 2450 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3581-RA 1033 CG3581-RA 131..631 16..516 2475 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19374159..19374659 516..16 2475 99.6 Minus
Blast to na_te.dros performed on 2015-02-11 19:04:38 has no hits.

BS14222.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:14 Download gff for BS14222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3581-PA 1..500 17..516 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:38 Download gff for BS14222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3581-RA 121..631 7..516 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:01:14 Download gff for BS14222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3581-RA 121..631 7..516 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:01:14 Download gff for BS14222.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19374159..19374669 7..516 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:38 Download gff for BS14222.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15199881..15200391 7..516 98   Minus

BS14222.pep Sequence

Translation from 16 to 777

> BS14222.pep
MSMIQEETKASVISVVKPPPSWVEWCERNAKPIERRLIKERRYLTRWQIP
GPMKKAQWREFYEWAASRAMPKELPVPVKQPIPCVDKFLPCARKPRAIDP
DEFQEKVAKLATPLERKMTPKHQYIYPVQPYSPIIVWGQPPLHDKGRPFK
PPQKPCCFFNADIEDKWWAELRFPIRKAALKARITPRILSLSKPKITPQF
PPHCYHPEHIYDVLNVKPPRRKKFTPQGWRLHQIRLLYLSKPVSRPEYEY
FYM*

BS14222.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3581-PA 253 CG3581-PA 1..253 1..253 1410 100 Plus
CG31404-PA 274 CG31404-PA 30..274 4..251 605 50.8 Plus
CG31245-PA 237 CG31245-PA 10..227 21..245 279 33.5 Plus