Clone Sequence Records
BS14223.complete Sequence
1256 bp assembled on 2009-12-07
GenBank Submission: KX801981
> BS14223.complete
GAAGTTATCAGTCGACATGGCTGCTAGCAATGACACTGAAGCAGGACACT
CTTCATTGCCCAGTGAAATAGATCGCTTGGCTGAACTGGTACAGGAGCGG
CTGGAATGGAAGTCTCTGGTTCTTTGGCGTCGTCCTGTGCAGACTTTGAA
GTATGGTGGCCTGGAGGCCGGGCATTTGTTGCTATCCTTCATCGAAAAGC
TGTTGAATCTGTGGCTAGTGGGCGGTCTGCTGCTGTTGGGCATGTTTTGT
TTACTGCCAGGACCTCATGCGGATTTCGTGATTTTCTGCAAGCATAGGTT
TGGATTTGCGGTCTACTGGCTGGGCCTGGGCGTGCTCTCATCTGTGGGCT
TTGGCACTGGGTTGCACACCTTTCTGCTCTACCTGGGCCCTCACCTAGCA
GCAGTCACTCTGGCCGCCTACGAGTGTCAAACGCTGGACTTTCCCACTCC
TCCGTATCCGGACATAAAAGTCTGCCCACAGGAGCCGTACAAGCGCAATT
ACCCAGATGTGTGGCAAATTTTGGCAAAGGTGCGTCCGGAGGCACTACTC
TGGGGCATTGGCACTGCTCTTGGTGAGCTGCCGCCATACTTTATGACACG
TAGAGCACGGCTCTCTGGCAAGGAGTTGGATGGAGCGGAGGAGGAAAAGT
TATTGGATGAAAGGCGAAGGTGCGGAAAGCTAGGCATGCTCGACCATGCC
AAGCTGTTCATGGAACGGGTGATGCGAAGAGTGGGCTTCATGGGAATACT
ATTCTGCGCCAGCGTACCCAATCCTCTGTTCGACCTGGCCGGCATAACGT
GCGGACATTTTCTGGTGCCCTTTTGGAAGTTCTTTGTGGCCACCCTGATC
GGCAAGGCGTTAATCAAGGCCACCATACAGCAGTTGTTTGTTATTGCGTC
CCTAACCGAGAGTCTAGTCGATAGGTTTGTGGTCGGTCTGGGGAAGCTAC
CCTATTTGGGACCTCCAATGCAGCGCATGATCAGGGAACTGCTGCAGTCG
ACGAAGCAGCAGATGCATGGAACAGTAAATTCCAATTCCCTGGCCTATCT
AAGCCATCTGGTTCGTGCTTTCGAGCTGTGTGCCTTCATCATGGTCACCT
GTTTCGTAGTATCTTCGCTGAACTGCCTCGCGCAAATCCATTGCAAGCGC
CAGCAGGAGAAGAAGCGTAAGATGCGAAACCTGGAGATGATACTGTATGC
CGATACGGAGACATCCTCGTCGGAGGAGTTCAGCGTCTAAAAGCTTTCTA
GACCAT
BS14223.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32087-RA | 1224 | CG32087-PA | 1..1224 | 17..1240 | 6090 | 99.8 | Plus |
Tango5-RE | 1593 | CG32675-PE | 625..740 | 311..426 | 310 | 84.5 | Plus |
Tango5-RF | 1593 | CG32675-PF | 625..740 | 311..426 | 310 | 84.5 | Plus |
Tango5-RE | 1593 | CG32675-PE | 1077..1191 | 754..868 | 260 | 81.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32087-RA | 1467 | CG32087-RA | 80..1304 | 16..1240 | 6095 | 99.8 | Plus |
Tango5-RE | 3141 | CG32675-RE | 1735..1850 | 311..426 | 310 | 84.5 | Plus |
Tango5-RF | 2298 | CG32675-RF | 892..1007 | 311..426 | 310 | 84.5 | Plus |
Tango5-RE | 3141 | CG32675-RE | 2187..2301 | 754..868 | 260 | 81.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11732223..11733447 | 16..1240 | 6095 | 99.8 | Plus |
X | 23542271 | X | 10761617..10761732 | 426..311 | 310 | 84.5 | Minus |
X | 23542271 | X | 10760888..10760989 | 868..767 | 255 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:51:34 has no hits.
BS14223.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:18 Download gff for
BS14223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32087-RA | 81..1302 | 17..1238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:44 Download gff for
BS14223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32087-RA | 81..1302 | 17..1238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:33 Download gff for
BS14223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32087-RA | 82..1303 | 17..1238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:31 Download gff for
BS14223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32087-RA | 81..1302 | 17..1238 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:31 Download gff for
BS14223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11732224..11733445 | 17..1238 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:44 Download gff for
BS14223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11725324..11726545 | 17..1238 | 99 | | Plus |
BS14223.3prime Sequence
638 bp (500 high quality bases) assembled on 2006-10-13
> BS14223.3prime
ATGGTCTAGAAAGCTTTTAGACGCTGAACTCCTCCGACGAGGATGTCTCC
GTATCGGCATACAGTATCATCTCCAGGTTTCGCATCTTACGCTTCTTCTC
CTGCTGGCGCTTGCAATGGATTTGCGCGAGGCAGTTCAGCGAAGATACTA
CGAAACAGGTGACCATGATGAAGGCACACAGCTCGAAAGCACGAACCAGA
TGGCTTAGATAGGCCAGGGAATTGGAATTTACTGTTCCATGCATCTGCTG
CTTCGTCGACTGCAGCAGTTCCCTGATCATGCGCTGCATTGGAGGTCCCA
AATAGGGTAGCTTCCCCAGACCGACCACAAACCTATCGACTAGACTCTCG
GTTAGGGACGCAATAACAAACAACTGCTGTATGGTGGCCTTGATTAACGC
CTTGCCGATCAGGGTGGCCACAAAGAACTTCCAAAAGGGCACCAGAAAAT
GTCCGCACGTTATGCCGGCCAGGTCGAACAGAGGATTGGGTACGCTGGCG
CAGAATAGTATTCCCATGAAGCCCACTCTTCGCATCACCCGTTCCATGAA
CAGCTTGGCATGGTCGAGCATGCCTAGCTTTCCGCACCTTCGCCTTTTCT
TCAATAACTTTTCCCTCCTCCGCTCCATCAAACTCCTT
BS14223.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32087-PA | 1224 | CG32087-RA | 604..1224 | 638..17 | 2970 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:21:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32087-RA | 1467 | CG32087-RA | 684..1304 | 638..17 | 3025 | 99.2 | Minus |
Tango5-RE | 3141 | CG32675-RE | 2187..2301 | 503..389 | 260 | 81.7 | Minus |
Tango5-RF | 2298 | CG32675-RF | 1344..1458 | 503..389 | 260 | 81.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11732827..11733447 | 638..17 | 3000 | 99.2 | Minus |
X | 23542271 | X | 10760888..10760989 | 389..490 | 255 | 83.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:21:48 has no hits.
BS14223.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:14 Download gff for
BS14223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32087-PA | 604..1224 | 17..638 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:38:49 Download gff for
BS14223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32087-RA | 684..1306 | 13..638 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:39 Download gff for
BS14223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32087-RA | 684..1306 | 13..638 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:39 Download gff for
BS14223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11732827..11733449 | 13..638 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:38:49 Download gff for
BS14223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11725927..11726549 | 13..638 | 98 | | Minus |
BS14223.5prime Sequence
490 bp (487 high quality bases) assembled on 2006-10-13
> BS14223.5prime
GAAGTTATCAGTCGACATGGCTGCTAGCAATGACACTGAAGCAGGACACT
CTTCATTGCCCAGTGAAATAGATCGCTTGGCTGAACTGGTACAGGAGCGG
CTGGAATGGAAGTCTCTGGTTCTTTGGCGTCGTCCTGTGCAGACTTTGAA
GTATGGTGGCCTGGAGGCCGGGCATTTGTTGCTATCCTTCATCGAAAAGC
TGTTGAATCTGTGGCTAGTGGGCGGTCTGCTGCTGTTGGGCATGTTTTGT
TTACTGCCAGGACCTCATGCGGATTTCGTGATTTTCTGCAAGCATAGGTT
TGGATTTGCGGTCTACTGGCTGGGCCTGGGCGTGCTCTCATCTGTGGGCT
TTGGCACTGGGTTGCACACCTTTCTGCTCTACCTGGGCCCTCACCTAGCA
GCAGTCACTCTGGCCGCCTACGAGTGTCAAACGCTGGACTTTCCCACTCC
TCCGTATCCGGACATAAAAGTCTGCCCACAGGAGCCGTAC
BS14223.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32087-PA | 1224 | CG32087-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
CG32675-PB | 1287 | CG32675-RB | 319..395 | 311..387 | 135 | 87 | Plus |
CG32675-PA | 1593 | CG32675-RA | 625..701 | 311..387 | 135 | 87 | Plus |
CG32675-PC | 1593 | CG32675-RC | 625..701 | 311..387 | 135 | 87 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32087-RA | 1467 | CG32087-RA | 80..554 | 16..490 | 2375 | 100 | Plus |
Tango5-RE | 3141 | CG32675-RE | 1735..1850 | 311..426 | 310 | 85.5 | Plus |
Tango5-RF | 2298 | CG32675-RF | 892..1007 | 311..426 | 310 | 85.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11732223..11732697 | 16..490 | 2375 | 100 | Plus |
X | 23542271 | X | 10761617..10761732 | 426..311 | 310 | 84.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:16:57 has no hits.
BS14223.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:15 Download gff for
BS14223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32087-PA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:48:17 Download gff for
BS14223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32087-RA | 71..554 | 7..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:18:50 Download gff for
BS14223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32087-RA | 71..554 | 7..490 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:18:50 Download gff for
BS14223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11732214..11732697 | 7..490 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:48:17 Download gff for
BS14223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11725314..11725797 | 7..490 | 99 | | Plus |
BS14223.pep Sequence
Translation from 16 to 1239
> BS14223.pep
MAASNDTEAGHSSLPSEIDRLAELVQERLEWKSLVLWRRPVQTLKYGGLE
AGHLLLSFIEKLLNLWLVGGLLLLGMFCLLPGPHADFVIFCKHRFGFAVY
WLGLGVLSSVGFGTGLHTFLLYLGPHLAAVTLAAYECQTLDFPTPPYPDI
KVCPQEPYKRNYPDVWQILAKVRPEALLWGIGTALGELPPYFMTRRARLS
GKELDGAEEEKLLDERRRCGKLGMLDHAKLFMERVMRRVGFMGILFCASV
PNPLFDLAGITCGHFLVPFWKFFVATLIGKALIKATIQQLFVIASLTESL
VDRFVVGLGKLPYLGPPMQRMIRELLQSTKQQMHGTVNSNSLAYLSHLVR
AFELCAFIMVTCFVVSSLNCLAQIHCKRQQEKKRKMRNLEMILYADTETS
SSEEFSV*
BS14223.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32087-PA | 407 | CG32087-PA | 1..407 | 1..407 | 2135 | 100 | Plus |
Tango5-PB | 428 | CG32675-PB | 7..399 | 2..382 | 951 | 51.5 | Plus |
Tango5-PE | 530 | CG32675-PE | 109..501 | 2..382 | 951 | 51.5 | Plus |
Tango5-PF | 530 | CG32675-PF | 109..501 | 2..382 | 951 | 51.5 | Plus |
Tango5-PD | 530 | CG32675-PD | 109..501 | 2..382 | 951 | 51.5 | Plus |