Clone Sequence Records
BS14224.3prime Sequence
453 bp (431 high quality bases) assembled on 2006-10-13
> BS14224.3prime
ATGGTCTAGAAAGCTTTTAGTATCCACACGGTTCGTCGTCCATTTCGGTG
CAATTGCAGTAGTTAATATCGGGAACGTTGTCGGATACCAGATCATCCTC
GGCAATTGTCACACAGCGCACGTTGCACGGATATTTCACCACGACCAAGG
GATGGCCATCATCGTCCGTGAGCCCCACATTATCGCAGCCATCGCCCTCG
TTCTGCCGGTGAACTATGAACTTGGTCATACAACAAAGCACGATCAGAAA
CTTAAGGGCCAGGACCCATAACGCCATCAGGATGTAAAAGCAGTTCCACA
CCGCACTAACGAACGCAGGCAAGCATCCGTTCGCATTGATTGAGTCCACG
GTGAGAGCGGGAAAAAGGCTGCCGGCTATTGCCACCGATGGACTGCCCCT
CACTGGGCAGGAAATTGTTAAAGCAGCTGTCGCAAGAGCGCTTGCAGCAT
GCG
BS14224.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14936-PA | 981 | Tsp33B-RA | 550..981 | 449..17 | 2000 | 98.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp33B-RA | 1111 | CG14936-RA | 608..1043 | 453..17 | 2070 | 98.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11791551..11791758 | 245..453 | 965 | 98.6 | Plus |
2L | 23513712 | 2L | 11791093..11791213 | 17..137 | 575 | 98.3 | Plus |
2L | 23513712 | 2L | 11791268..11791376 | 137..245 | 515 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:04:42 has no hits.
BS14224.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:15 Download gff for
BS14224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14936-PA | 546..981 | 17..453 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:40 Download gff for
BS14224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp33B-RA | 608..1047 | 11..453 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:01:31 Download gff for
BS14224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp33B-RA | 608..1047 | 11..453 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:01:31 Download gff for
BS14224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11791089..11791212 | 11..136 | 96 | <- | Plus |
2L | 11791268..11791375 | 137..244 | 98 | <- | Plus |
2L | 11791551..11791758 | 245..453 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:40 Download gff for
BS14224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11791089..11791212 | 11..136 | 96 | <- | Plus |
arm_2L | 11791268..11791375 | 137..244 | 98 | <- | Plus |
arm_2L | 11791551..11791758 | 245..453 | 98 | | Plus |
BS14224.5prime Sequence
530 bp (479 high quality bases) assembled on 2006-10-13
> BS14224.5prime
GAAGTTATCAGTCGACATGCGCCAGCCCTTCCGCCGAGCCTCCGTCTACC
TCCACCTGCTGTTAATAACCGAGGCCGTGATCGGACTGCTGATCCTGGTG
GTGACCGCCTACTACCACACCGTGCTCACCGGCTATCTATCGGATATTGA
GTGCCGCCTGGTCTACGGCTATCTGTTTGGGATCTACGTGTTTGGCGCCC
AGGTGGTGGTGACCTTTCTCTGCAGCATTGCCATGTGGCGGCGAATTTGG
CGGCGTCGCTGCACGCCGAACATTCGCCTCTTGCTATCCGTGTGGGCCTT
CTACTCCTGCGTAATCATTGCCTCCGGTTTCGGGTGCGTTTGGAATCTTT
ACCGGGGTGTCGATGTCCTCGAGAATGCGGCGGACACCTCGCTGACCCGC
GGCATCGACATGTACTACTCGTGTCCCGAGTGGAAACTCCTGTGGGACGG
ACTGCAGTGGCACAAGGAGTGCTTGCGGGGTGCATGGCTACAAGGACTGG
ATGAACGCGGAGTGGATGCCACGGCGGGAG
BS14224.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14936-PA | 981 | Tsp33B-RA | 1..513 | 17..530 | 2530 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:20:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp33B-RA | 1111 | CG14936-RA | 63..575 | 17..530 | 2545 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11791791..11792303 | 530..17 | 2520 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:20:32 has no hits.
BS14224.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:15 Download gff for
BS14224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14936-PA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:39:42 Download gff for
BS14224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp33B-RA | 63..575 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:50 Download gff for
BS14224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp33B-RA | 63..575 | 17..530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:50 Download gff for
BS14224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11791791..11792303 | 17..530 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:39:42 Download gff for
BS14224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11791791..11792303 | 17..530 | 99 | | Minus |
BS14224.complete Sequence
1013 bp assembled on 2010-02-09
GenBank Submission: KX805240
> BS14224.complete
GAAGTTATCAGTCGACATGCGCCAGCCCTTCCGCCGAGCCTCCGTCTACC
TCCACCTGCTGTTAATAACCGAGGCCGTGATCGGACTGCTGATCCTGGTG
GTGACCGCCTACTACCACACCGTGCTCACCGGCTATCTATCGGATATTGA
GTGCCGCCTGGTCTACGGCTATCTGTTTGGGATCTACGTGTTTGGCGCCC
AGGTGGTGGTGACCTTTCTCTGCAGCATTGCCATGTGGCGGCGAATTTGG
CGGCGTCGCTGCACGCCGAACATTCGCCTCTTGCTATCCGTGTGGGCCTT
CTACTCCTGCGTAATCATTGCCTCCGGTTTCGGGTGCGTTTGGAATCTTT
ACCGGGGTGTCGATGTCCTCGAGAATGCGGCGGACACCTCGCTGACCCGC
GGCATCGACATGTACTACTCGTGTCCCGAGTGGAAACTCCTGTGGGACGG
ACTGCAGTGGCACAAGGAGTGCTGCGGGGTGCATGGCTACAAGGACTGGA
TGAACGCGGAGTGGATGCCACGGCGGGAGAATAACTGCACGTCGATGGTC
CTGGCACCCTTCGCCTGCTGCAAGCGCTCCTGCGACAGCTGCTTTAACAA
TTTCCTGCCCAGTGAGGGGCAGTCCATCGGTGGCAATAGCCGGCAGCCTT
TTCCCGCTCTCACCGTGGACTCAATCAATGCGAACGGATGCTTGCCTGCG
TTCGTTAGTGCGGTGTGGAACTGCTTTTACATCCTGATGGCGTTATGGGT
CCTGGCCCTTAAGTTTCTGATCGTGCTTTGTTGTATGACCAAGTTCATAG
TTCACCGGCAGAACGAGGGCGATGGCTGCGATAATGTGGGGCTCACGGAC
GATGATGGCCATCCCTTGGTCGTGGTGAAATATCCGTGCAACGTGCGCTG
TGTGACAATTGCCGAGGATGATCTGGTATCCGACAACGTTCCCGATATTA
ACTACTGCAATTGCACCGAAATGGACGACGAACCGTGTGGATACTAAAAG
CTTTCTAGACCAT
BS14224.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp33B-RA | 981 | CG14936-PA | 1..981 | 17..997 | 4845 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp33B-RA | 1111 | CG14936-RA | 63..1043 | 17..997 | 4845 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11791551..11792303 | 769..17 | 3765 | 100 | Minus |
2L | 23513712 | 2L | 11791093..11791213 | 997..877 | 575 | 98.3 | Minus |
2L | 23513712 | 2L | 11791268..11791376 | 877..769 | 515 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:02:34 has no hits.
BS14224.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:54 Download gff for
BS14224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp33B-RA | 63..1041 | 17..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:22 Download gff for
BS14224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp33B-RA | 63..1041 | 17..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:14 Download gff for
BS14224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp33B-RA | 63..1041 | 17..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:49 Download gff for
BS14224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp33B-RA | 63..1041 | 17..995 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:49 Download gff for
BS14224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11791095..11791212 | 878..995 | 98 | <- | Minus |
2L | 11791268..11791375 | 770..877 | 98 | <- | Minus |
2L | 11791551..11792303 | 17..769 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:22 Download gff for
BS14224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11791095..11791212 | 878..995 | 98 | <- | Minus |
arm_2L | 11791268..11791375 | 770..877 | 98 | <- | Minus |
arm_2L | 11791551..11792303 | 17..769 | 100 | | Minus |
BS14224.pep Sequence
Translation from 16 to 996
> BS14224.pep
MRQPFRRASVYLHLLLITEAVIGLLILVVTAYYHTVLTGYLSDIECRLVY
GYLFGIYVFGAQVVVTFLCSIAMWRRIWRRRCTPNIRLLLSVWAFYSCVI
IASGFGCVWNLYRGVDVLENAADTSLTRGIDMYYSCPEWKLLWDGLQWHK
ECCGVHGYKDWMNAEWMPRRENNCTSMVLAPFACCKRSCDSCFNNFLPSE
GQSIGGNSRQPFPALTVDSINANGCLPAFVSAVWNCFYILMALWVLALKF
LIVLCCMTKFIVHRQNEGDGCDNVGLTDDDGHPLVVVKYPCNVRCVTIAE
DDLVSDNVPDINYCNCTEMDDEPCGY*
BS14224.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp33B-PA | 326 | CG14936-PA | 1..326 | 1..326 | 1817 | 100 | Plus |