Clone BS14224 Report

Search the DGRC for BS14224

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptTsp33B-RA
Protein status:BS14224.pep: full length peptide match
Sequenced Size:1013

Clone Sequence Records

BS14224.3prime Sequence

453 bp (431 high quality bases) assembled on 2006-10-13

> BS14224.3prime
ATGGTCTAGAAAGCTTTTAGTATCCACACGGTTCGTCGTCCATTTCGGTG
CAATTGCAGTAGTTAATATCGGGAACGTTGTCGGATACCAGATCATCCTC
GGCAATTGTCACACAGCGCACGTTGCACGGATATTTCACCACGACCAAGG
GATGGCCATCATCGTCCGTGAGCCCCACATTATCGCAGCCATCGCCCTCG
TTCTGCCGGTGAACTATGAACTTGGTCATACAACAAAGCACGATCAGAAA
CTTAAGGGCCAGGACCCATAACGCCATCAGGATGTAAAAGCAGTTCCACA
CCGCACTAACGAACGCAGGCAAGCATCCGTTCGCATTGATTGAGTCCACG
GTGAGAGCGGGAAAAAGGCTGCCGGCTATTGCCACCGATGGACTGCCCCT
CACTGGGCAGGAAATTGTTAAAGCAGCTGTCGCAAGAGCGCTTGCAGCAT
GCG

BS14224.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14936-PA 981 Tsp33B-RA 550..981 449..17 2000 98.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp33B-RA 1111 CG14936-RA 608..1043 453..17 2070 98.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11791551..11791758 245..453 965 98.6 Plus
2L 23513712 2L 11791093..11791213 17..137 575 98.3 Plus
2L 23513712 2L 11791268..11791376 137..245 515 98.2 Plus
Blast to na_te.dros performed on 2015-02-11 19:04:42 has no hits.

BS14224.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:15 Download gff for BS14224.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14936-PA 546..981 17..453 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:40 Download gff for BS14224.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 608..1047 11..453 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:01:31 Download gff for BS14224.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 608..1047 11..453 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:01:31 Download gff for BS14224.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11791089..11791212 11..136 96 <- Plus
2L 11791268..11791375 137..244 98 <- Plus
2L 11791551..11791758 245..453 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:40 Download gff for BS14224.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11791089..11791212 11..136 96 <- Plus
arm_2L 11791268..11791375 137..244 98 <- Plus
arm_2L 11791551..11791758 245..453 98   Plus

BS14224.5prime Sequence

530 bp (479 high quality bases) assembled on 2006-10-13

> BS14224.5prime
GAAGTTATCAGTCGACATGCGCCAGCCCTTCCGCCGAGCCTCCGTCTACC
TCCACCTGCTGTTAATAACCGAGGCCGTGATCGGACTGCTGATCCTGGTG
GTGACCGCCTACTACCACACCGTGCTCACCGGCTATCTATCGGATATTGA
GTGCCGCCTGGTCTACGGCTATCTGTTTGGGATCTACGTGTTTGGCGCCC
AGGTGGTGGTGACCTTTCTCTGCAGCATTGCCATGTGGCGGCGAATTTGG
CGGCGTCGCTGCACGCCGAACATTCGCCTCTTGCTATCCGTGTGGGCCTT
CTACTCCTGCGTAATCATTGCCTCCGGTTTCGGGTGCGTTTGGAATCTTT
ACCGGGGTGTCGATGTCCTCGAGAATGCGGCGGACACCTCGCTGACCCGC
GGCATCGACATGTACTACTCGTGTCCCGAGTGGAAACTCCTGTGGGACGG
ACTGCAGTGGCACAAGGAGTGCTTGCGGGGTGCATGGCTACAAGGACTGG
ATGAACGCGGAGTGGATGCCACGGCGGGAG

BS14224.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14936-PA 981 Tsp33B-RA 1..513 17..530 2530 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp33B-RA 1111 CG14936-RA 63..575 17..530 2545 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11791791..11792303 530..17 2520 99.8 Minus
Blast to na_te.dros performed on 2015-02-11 22:20:32 has no hits.

BS14224.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:15 Download gff for BS14224.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14936-PA 1..513 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:39:42 Download gff for BS14224.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 63..575 17..530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:50 Download gff for BS14224.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 63..575 17..530 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:50 Download gff for BS14224.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11791791..11792303 17..530 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:39:42 Download gff for BS14224.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11791791..11792303 17..530 99   Minus

BS14224.complete Sequence

1013 bp assembled on 2010-02-09

GenBank Submission: KX805240

> BS14224.complete
GAAGTTATCAGTCGACATGCGCCAGCCCTTCCGCCGAGCCTCCGTCTACC
TCCACCTGCTGTTAATAACCGAGGCCGTGATCGGACTGCTGATCCTGGTG
GTGACCGCCTACTACCACACCGTGCTCACCGGCTATCTATCGGATATTGA
GTGCCGCCTGGTCTACGGCTATCTGTTTGGGATCTACGTGTTTGGCGCCC
AGGTGGTGGTGACCTTTCTCTGCAGCATTGCCATGTGGCGGCGAATTTGG
CGGCGTCGCTGCACGCCGAACATTCGCCTCTTGCTATCCGTGTGGGCCTT
CTACTCCTGCGTAATCATTGCCTCCGGTTTCGGGTGCGTTTGGAATCTTT
ACCGGGGTGTCGATGTCCTCGAGAATGCGGCGGACACCTCGCTGACCCGC
GGCATCGACATGTACTACTCGTGTCCCGAGTGGAAACTCCTGTGGGACGG
ACTGCAGTGGCACAAGGAGTGCTGCGGGGTGCATGGCTACAAGGACTGGA
TGAACGCGGAGTGGATGCCACGGCGGGAGAATAACTGCACGTCGATGGTC
CTGGCACCCTTCGCCTGCTGCAAGCGCTCCTGCGACAGCTGCTTTAACAA
TTTCCTGCCCAGTGAGGGGCAGTCCATCGGTGGCAATAGCCGGCAGCCTT
TTCCCGCTCTCACCGTGGACTCAATCAATGCGAACGGATGCTTGCCTGCG
TTCGTTAGTGCGGTGTGGAACTGCTTTTACATCCTGATGGCGTTATGGGT
CCTGGCCCTTAAGTTTCTGATCGTGCTTTGTTGTATGACCAAGTTCATAG
TTCACCGGCAGAACGAGGGCGATGGCTGCGATAATGTGGGGCTCACGGAC
GATGATGGCCATCCCTTGGTCGTGGTGAAATATCCGTGCAACGTGCGCTG
TGTGACAATTGCCGAGGATGATCTGGTATCCGACAACGTTCCCGATATTA
ACTACTGCAATTGCACCGAAATGGACGACGAACCGTGTGGATACTAAAAG
CTTTCTAGACCAT

BS14224.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp33B-RA 981 CG14936-PA 1..981 17..997 4845 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp33B-RA 1111 CG14936-RA 63..1043 17..997 4845 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11791551..11792303 769..17 3765 100 Minus
2L 23513712 2L 11791093..11791213 997..877 575 98.3 Minus
2L 23513712 2L 11791268..11791376 877..769 515 98.2 Minus
Blast to na_te.dros performed on 2014-11-27 13:02:34 has no hits.

BS14224.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:54 Download gff for BS14224.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 63..1041 17..995 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:22 Download gff for BS14224.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 63..1041 17..995 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:14 Download gff for BS14224.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 63..1041 17..995 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:49 Download gff for BS14224.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 63..1041 17..995 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:49 Download gff for BS14224.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11791095..11791212 878..995 98 <- Minus
2L 11791268..11791375 770..877 98 <- Minus
2L 11791551..11792303 17..769 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:22 Download gff for BS14224.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11791095..11791212 878..995 98 <- Minus
arm_2L 11791268..11791375 770..877 98 <- Minus
arm_2L 11791551..11792303 17..769 100   Minus

BS14224.pep Sequence

Translation from 16 to 996

> BS14224.pep
MRQPFRRASVYLHLLLITEAVIGLLILVVTAYYHTVLTGYLSDIECRLVY
GYLFGIYVFGAQVVVTFLCSIAMWRRIWRRRCTPNIRLLLSVWAFYSCVI
IASGFGCVWNLYRGVDVLENAADTSLTRGIDMYYSCPEWKLLWDGLQWHK
ECCGVHGYKDWMNAEWMPRRENNCTSMVLAPFACCKRSCDSCFNNFLPSE
GQSIGGNSRQPFPALTVDSINANGCLPAFVSAVWNCFYILMALWVLALKF
LIVLCCMTKFIVHRQNEGDGCDNVGLTDDDGHPLVVVKYPCNVRCVTIAE
DDLVSDNVPDINYCNCTEMDDEPCGY*

BS14224.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp33B-PA 326 CG14936-PA 1..326 1..326 1817 100 Plus