Clone BS14225 Report

Search the DGRC for BS14225

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG3611-RA
Protein status:BS14225.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14225.3prime Sequence

396 bp (396 high quality bases) assembled on 2006-10-13

> BS14225.3prime
ATGGTCTAGAAAGCTTCTAGCACATGTACAGCTTGGAGGGCTTCATTCGG
CCGTACTCCCCGTTCTCGGTGACCGCAACTTTGAGGCCCGTAATGCCGTC
TTGCTCCAGCATCTTCAGATCCTCCAAACCTTCCGCAACCTCCTGGGCGG
TAACCACGAACTTCTTTGCCAGGCGCCTGCGGTTGGCGTACTTGAGGAAG
TGGCCGTCGCCGTACCGCTGGCGACTCGTCAGATAGATCTGGTCAATCCG
CTGATAATGGCAGCACTGCATCTTAGGGTACCACGCGAAAGTCTCCTGCC
AGTGCCTCGTCGTCCTTTCCATGGCATGACTGAAGGCGAGCTGGTAGCGC
AGCTGCTCCGTGGTCACTATGTCCGCCGGCATGTCGACTGATAACT

BS14225.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3611-PA 366 CG3611-RA 1..366 382..17 1805 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3611-RB 1126 CG3611-RB 253..618 382..17 1815 99.7 Minus
CG3611-RC 1919 CG3611-RC 253..618 382..17 1815 99.7 Minus
CG3611-RA 765 CG3611-RA 313..678 382..17 1815 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24799110..24799475 382..17 1815 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 11:01:09 has no hits.

BS14225.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:16 Download gff for BS14225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3611-PA 1..366 17..382 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:56 Download gff for BS14225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 313..678 17..382 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:30 Download gff for BS14225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 313..678 17..382 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:30 Download gff for BS14225.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24799110..24799475 17..382 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:56 Download gff for BS14225.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20686633..20686998 17..382 99   Minus

BS14225.5prime Sequence

396 bp (396 high quality bases) assembled on 2006-10-13

> BS14225.5prime
GAAGTTATCAGTCGACATGCCGGCGGACATAGTGACCACGGAGCAGCTGC
GCTACCAGCTCGCCTTCAGTCATGCCATGGAAAGGACGACGAGGCACTGG
CAGGAGACTTTCGCGTGGTACCCTAAGATGCAGTGCTGCCATTATCAGCG
GATTGACCAGATCTATCTGACGAGTCGCCAGCGGTACGGCGACGGCCACT
TCCTCAAGTACGCCAACCGCAGGCGCCTGGCAAAGAAGTTCGTGGTTACC
GCCCAGGAGGTTGCGGAAGGTTTGGAGGATCTGAAGATGCTGGAGCAAGA
CGGCATTACGGGCCTCAAAGTTGCGGTCACCGAGAACGGGGAGTACGGCC
GAATGAAGCCCTCCAAGCTGTACATGTGCTAGAAGCTTTCTAGACC

BS14225.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3611-PA 366 CG3611-RA 1..366 17..382 1805 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3611-RB 1126 CG3611-RB 253..618 17..382 1815 99.7 Plus
CG3611-RC 1919 CG3611-RC 253..618 17..382 1815 99.7 Plus
CG3611-RA 765 CG3611-RA 313..678 17..382 1815 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24799110..24799475 17..382 1815 99.7 Plus
Blast to na_te.dros performed on 2015-01-30 17:38:09 has no hits.

BS14225.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:16 Download gff for BS14225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3611-PA 1..366 17..382 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:26 Download gff for BS14225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 313..678 17..382 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:44 Download gff for BS14225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 313..678 17..382 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:44 Download gff for BS14225.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24799110..24799475 17..382 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:26 Download gff for BS14225.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20686633..20686998 17..382 99   Plus

BS14225.complete Sequence

398 bp assembled on 2006-11-01

> BS14225.complete
GAAGTTATCAGTCGACATGCCGGCGGACATAGTGACCACGGAGCAGCTGC
GCTACCAGCTCGCCTTCAGTCATGCCATGGAAAGGACGACGAGGCACTGG
CAGGAGACTTTCGCGTGGTACCCTAAGATGCAGTGCTGCCATTATCAGCG
GATTGACCAGATCTATCTGACGAGTCGCCAGCGGTACGGCGACGGCCACT
TCCTCAAGTACGCCAACCGCAGGCGCCTGGCAAAGAAGTTCGTGGTTACC
GCCCAGGAGGTTGCGGAAGGTTTGGAGGATCTGAAGATGCTGGAGCAAGA
CGGCATTACGGGCCTCAAAGTTGCGGTCACCGAGAACGGGGAGTACGGCC
GAATGAAGCCCTCCAAGCTGTACATGTGCTAGAAGCTTTCTAGACCAT

BS14225.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3611-RB 366 CG3611-PB 1..366 17..382 1815 99.7 Plus
CG3611-RC 366 CG3611-PC 1..366 17..382 1815 99.7 Plus
CG3611-RA 366 CG3611-PA 1..366 17..382 1815 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3611-RB 1126 CG3611-RB 253..618 17..382 1815 99.7 Plus
CG3611-RC 1919 CG3611-RC 253..618 17..382 1815 99.7 Plus
CG3611-RA 765 CG3611-RA 313..678 17..382 1815 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24799110..24799475 17..382 1815 99.7 Plus
Blast to na_te.dros performed on 2014-11-27 08:19:19 has no hits.

BS14225.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:08 Download gff for BS14225.complete
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 1..366 17..382 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:17 Download gff for BS14225.complete
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 313..678 17..382 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:33 Download gff for BS14225.complete
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 313..678 17..382 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:38:08 Download gff for BS14225.complete
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 313..678 17..382 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:48 Download gff for BS14225.complete
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 313..678 17..382 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:48 Download gff for BS14225.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24799110..24799475 17..382 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:33 Download gff for BS14225.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20686633..20686998 17..382 99   Plus

BS14225.pep Sequence

Translation from 16 to 381

> BS14225.pep
MPADIVTTEQLRYQLAFSHAMERTTRHWQETFAWYPKMQCCHYQRIDQIY
LTSRQRYGDGHFLKYANRRRLAKKFVVTAQEVAEGLEDLKMLEQDGITGL
KVAVTENGEYGRMKPSKLYMC*

BS14225.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3611-PB 121 CG3611-PB 1..121 1..121 649 100 Plus
CG3611-PC 121 CG3611-PC 1..121 1..121 649 100 Plus
CG3611-PA 121 CG3611-PA 1..121 1..121 649 100 Plus
CG34169-PA 124 CG34169-PA 5..123 3..121 171 31.5 Plus
CG34106-PB 122 CG34106-PB 5..118 5..118 164 29.8 Plus