Clone BS14226 Report

Search the DGRC for BS14226

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptRacGAP84C-RA
Protein status:BS14226.pep: full length peptide match
Sequenced Size:1187

Clone Sequence Records

BS14226.complete Sequence

1187 bp assembled on 2009-12-07

GenBank Submission: KX802832

> BS14226.complete
GAAGTTATCAGTCGACATGATTAGTGGCTCTGGGAGTCGGACGCCCTCAA
ATCGACTTTATTTGTCGCCCGTTCGCCCCACGATGCAGAACAAACGGAGG
CTTCTGCGGGAGTACAGGTCCTACGATGACCTCAGCGAGCACTACCGCAT
GTTTGGATCGCAGTCCCTGGACTCGCTGCAGGATCGCGTGGACATGAATC
CCAGTGGCTGCGATGGCTTATCCACGGACGGACTCGACTTCTGCTCGCAG
TCCCACTCGGGGCTGCTGAGGGAGCACAATTTCAAGATTAAGTCCTACTA
CTACAACGTGGGGAACTGCGTACACTGCCGCAAAAGGATCCGCTTCGCCA
TGGCCAGCCTGAGGTGTCGGGCGTGTCCGCTCCGCTGCCACATCGGTTGC
TGCCGCCAGCTGACGGTGAACTGCATCCCCCAGCCTCAAATCGGTACGAA
GAGAGGATGTCTCAGCGATTATGCGCCTCGGGTGGCGCCCATGGTGCCGG
CCTTAATTGTCCATTGTGTAACGGAGATCGAGGCGCGGGGATTGCAGCAG
GAGGGACTCTACCGGGTGTCCTCCACCCGAGAGAAATGCAAACGACTGCG
TCGGAAGCTGCTGCGTGGCAAGTCCACGCCGCATTTGGGCAATAAAGACA
CCCACACACTGTGCTGTTGTGTTAAGGACTTTCTTCGGCAGTTGGTTCAC
CCTCTGATTCCCATTTACCACCGAAGGGATTTCGAGGAGGCCACGCGGCA
CGAAGATCGTCTGGCTGTGGAGATGGCGGTATATTTAGCGGTTCTGGAGC
TGCATCAGGCTCACAGGGATACGTTGGCCTACTTAATGCTTCACTGGCAG
AAAATTGCCGAAAGTCCTGCTGTCCGCATGACGGTCAACAATCTTGCCGT
GATCTTCGCTCCAACTCTGTTCGGAGATCTGGATCTAACCCTCGAAAATG
TCGTCACTTGGCAGCGGGTGCTGAAGGTGCTACTTCTGATGCCTGCCGGA
TTTTGGTCTCAGTTCTTGGAGGTCCATCCCCTTCCCACTTCGTTGGGCAG
CACCTATGACTTTGAGGACCGGTACAATCACCGTCACTGGGACAGCTCGT
CCAATCTGGGATGGTCTTCTGTTAAGACCTACTTTAGATCAATGGTCAAC
CTTAGCAGTACTCACCTATAGAAGCTTTCTAGACCAT

BS14226.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
RacGAP84C-RA 1155 CG2595-PA 1..1155 17..1171 5775 100 Plus
RacGAP84C-RB 1152 CG2595-PB 1..1130 17..1146 5650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
RacGAP84C-RA 1412 CG2595-RA 144..1298 17..1171 5775 100 Plus
RacGAP84C-RB 1354 CG2595-RB 144..1273 17..1146 5650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7286559..7287370 335..1146 4060 100 Plus
3R 32079331 3R 7286105..7286425 17..337 1605 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:53:40 has no hits.

BS14226.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:50 Download gff for BS14226.complete
Subject Subject Range Query Range Percent Splice Strand
RacGAP84C-RA 743..1897 17..1171 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:45 Download gff for BS14226.complete
Subject Subject Range Query Range Percent Splice Strand
RacGAP84C-RA 144..1298 17..1171 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:02 Download gff for BS14226.complete
Subject Subject Range Query Range Percent Splice Strand
RacGAP84C-RA 743..1897 17..1171 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:22 Download gff for BS14226.complete
Subject Subject Range Query Range Percent Splice Strand
RacGAP84C-RA 144..1298 17..1171 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:22 Download gff for BS14226.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7286105..7286424 17..336 100 -> Plus
3R 7286561..7287368 337..1144 100 -> Plus
3R 7287489..7287515 1145..1171 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:45 Download gff for BS14226.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3111827..3112146 17..336 100 -> Plus
arm_3R 3112283..3113090 337..1144 100 -> Plus
arm_3R 3113211..3113237 1145..1171 100   Plus

BS14226.5prime Sequence

508 bp (455 high quality bases) assembled on 2006-10-13

> BS14226.5prime
GAAGTTATCAGTCGACATGATTAGTGGCTCTGGGAGTCGGACGCCCTCAA
ATCGACTTTATTTGTCGCCCGTTCGCCCCACGATGCAGAACAAACGGAGG
CTTCTGCGGGAGTACAGGTCCTACGATGACCTCAGCGAGCACTACCGCAT
GTTTGGATCGCAGTCCCTGGACTCGCTGCAGGATCGCGTGGACATGAATC
CCAGTGGCTGCGATGGCTTATCCACGGACGGACTCGACTTCTGCTCGCAG
TCCCACTCGGGGCTGCTGAGGGAGCACAATTTCAAGATTAAGTCCTACTA
CTACAACGTGGGGAACTGCGTACACTGCCGCAAAAGGATCCGCTTCGCCA
TGGCCAGCCTGAGGTGTCGGGCGTGTCCGCTCCGCTGCCACATCGGTTGC
TGCCGCCAGCTGACGGTGAACTGCATCCCCCAGCCTCAAATCGGTACGAA
GAGAGGATGTCTCAGCGATTATGCGCCCTCGGGTGGCGCCCATGGTGCCG
GCCTTAAT

BS14226.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2595-PA 1155 RacGAP84C-RA 1..491 17..508 2420 99.7 Plus
CG2595-PB 1152 RacGAP84C-RB 1..491 17..508 2420 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
RacGAP84C-RB 1354 CG2595-RB 144..634 17..508 2435 99.8 Plus
RacGAP84C-RA 1412 CG2595-RA 144..634 17..508 2435 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7286105..7286425 17..337 1605 100 Plus
3R 32079331 3R 7286559..7286731 335..508 820 99.4 Plus
Blast to na_te.dros performed on 2015-02-11 22:20:46 has no hits.

BS14226.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:17 Download gff for BS14226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2595-PB 1..491 17..508 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:39:45 Download gff for BS14226.5prime
Subject Subject Range Query Range Percent Splice Strand
RacGAP84C-RA 144..634 17..508 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:53 Download gff for BS14226.5prime
Subject Subject Range Query Range Percent Splice Strand
RacGAP84C-RA 144..634 17..508 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:53 Download gff for BS14226.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7286105..7286424 17..336 100 -> Plus
3R 7286561..7286731 337..508 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:39:45 Download gff for BS14226.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3111827..3112146 17..336 100 -> Plus
arm_3R 3112283..3112453 337..508 99   Plus

BS14226.3prime Sequence

453 bp (400 high quality bases) assembled on 2006-10-13

> BS14226.3prime
ATGGTCTAGAAAGCTTCTATCGGTGAGTACTGCTAAGGTTGACCATTGAT
CTAAAGTAGGTCTTAACAGAAGACCATCCCAGATTGGACGAGCTGTCCCA
GTGACGGTGATTGTACCGGTCCTCAAAGTCATAGGTGCTGCCCAACGAAG
TGGGAAGGGGATGGACCTCCAAGAACTGAGACCAAAATCCGGCAGGCATC
AGAAGTAGCACCTTCAGCACCCGCTGCCAAGTGACGACATTTTCGAGGGT
TAGATCCAGATCTCCGAACAGAGTTGGAGCGAAGATCACGGCAAGATTGT
TGACCGTCATGCGGACAGCAGGACTTTCGGCTATTTTCTGCCAGTGAAGC
ATTAAGTAGGCCAACGTATCCCTGTGAGCCTGATGCAGCTCCAGAACCGC
TAATTATACCGCCTTCTCCACAGCCAGACGATCTTCGTGCCGCGTGGCCT
CCT

BS14226.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2595-PA 1155 RacGAP84C-RA 719..1150 453..22 2085 99.3 Minus
CG2595-PB 1152 RacGAP84C-RB 719..1130 453..42 1985 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
RacGAP84C-RA 1412 CG2595-RA 862..1298 453..17 2125 99.1 Minus
RacGAP84C-RB 1354 CG2595-RB 862..1273 453..42 2015 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7286959..7287370 453..42 2015 99.3 Minus
Blast to na_te.dros performed on 2015-02-12 04:40:47 has no hits.

BS14226.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:17 Download gff for BS14226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2595-PA 719..1155 17..453 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:17:17 Download gff for BS14226.3prime
Subject Subject Range Query Range Percent Splice Strand
RacGAP84C-RA 862..1298 17..453 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:26:38 Download gff for BS14226.3prime
Subject Subject Range Query Range Percent Splice Strand
RacGAP84C-RA 862..1298 17..453 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:26:38 Download gff for BS14226.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7286959..7287368 44..453 99 -> Minus
3R 7287489..7287515 17..43 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:17:17 Download gff for BS14226.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3112681..3113090 44..453 99 -> Minus
arm_3R 3113211..3113237 17..43 96   Minus

BS14226.pep Sequence

Translation from 16 to 1170

> BS14226.pep
MISGSGSRTPSNRLYLSPVRPTMQNKRRLLREYRSYDDLSEHYRMFGSQS
LDSLQDRVDMNPSGCDGLSTDGLDFCSQSHSGLLREHNFKIKSYYYNVGN
CVHCRKRIRFAMASLRCRACPLRCHIGCCRQLTVNCIPQPQIGTKRGCLS
DYAPRVAPMVPALIVHCVTEIEARGLQQEGLYRVSSTREKCKRLRRKLLR
GKSTPHLGNKDTHTLCCCVKDFLRQLVHPLIPIYHRRDFEEATRHEDRLA
VEMAVYLAVLELHQAHRDTLAYLMLHWQKIAESPAVRMTVNNLAVIFAPT
LFGDLDLTLENVVTWQRVLKVLLLMPAGFWSQFLEVHPLPTSLGSTYDFE
DRYNHRHWDSSSNLGWSSVKTYFRSMVNLSSTHL*

BS14226.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
RacGAP84C-PA 384 CG2595-PA 1..384 1..384 2062 100 Plus
RacGAP84C-PB 383 CG2595-PB 1..377 1..377 2027 100 Plus
tum-PA 625 CG13345-PA 312..581 80..341 679 48.3 Plus
RhoGAP5A-PA 494 CG3208-PA 240..463 85..301 213 29.1 Plus
RhoGAP18B-PH 468 CG42274-PH 289..440 158..310 156 31 Plus