Clone Sequence Records
BS14227.3prime Sequence
591 bp (540 high quality bases) assembled on 2006-10-13
> BS14227.3prime
ATGGTCTAGAAAGCTTCTATTCGCTGCTATTGAAAAAAAATTGAATATCT
CTAATCGGTCGACATTGATGAATTACGCGTTCCATTCTGAGGAAAGGGAG
CTTGAAGCACCAGAAGTTTGAGTACATGGACTGATAGGCATCCCTGAGTT
CAGAGTGTTGACTGAGGATAATGGTAATGGGATAGCTAAGATTTTCACTC
CTCCGGATTCGGTAAATACCTTGAAGGACCTTCCAGCTCAACTGGGGACA
GTCCAGCAAGTAGATATCGTTGAGACCGGGACACATTCGCACCATATCTA
TCAACTGGTAGTCCTTAATATCAGGGCAATTAATTAGAGCAATGTATTTC
TGAACTCTTGGAAACAAGAGCCGGCTAATCTCGCGGTCGCAGAAGTAGCA
GTTTGCCAGGACCAATCCCCGCAATCGAGAGCACCGATCCAACCCGACCT
CCTTCATCCAATTGGGATCCTGAAAGCCTTTGCAATCTATTTGAATCAGT
TGCACAGAATCTTTCCGTCTATTCAGTATAAATTGCATGCACTCAAGTGT
CAGCTGACTTCTCGTTTCACATTGTGTTAACTCCCACAGTC
BS14227.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31819-PA | 1494 | CG31819-RA | 920..1494 | 591..17 | 2850 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31819-RA | 1690 | CG31819-RA | 1049..1623 | 591..17 | 2860 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16212566..16213032 | 591..125 | 2320 | 99.8 | Minus |
2L | 23513712 | 2L | 16213129..16213237 | 125..17 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:21:15 has no hits.
BS14227.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:17 Download gff for
BS14227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31819-PA | 920..1494 | 17..591 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:39:49 Download gff for
BS14227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31819-RA | 1049..1632 | 5..591 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:59 Download gff for
BS14227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31819-RA | 1049..1632 | 5..591 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:59 Download gff for
BS14227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16212566..16213032 | 125..591 | 99 | -> | Minus |
2L | 16213130..16213246 | 5..124 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:39:49 Download gff for
BS14227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16212566..16213032 | 125..591 | 99 | -> | Minus |
arm_2L | 16213130..16213246 | 5..124 | 95 | | Minus |
BS14227.5prime Sequence
576 bp (495 high quality bases) assembled on 2006-10-13
> BS14227.5prime
GAAGTTATCAGTCGACATGTTGAGCCGTAGTCCTAGACTATTGAAGAATC
CAGAGAGGAAACAGCGTCTGCCAAAATTCCAAGTTGGAAACGGATCGGTG
ATCGAGATGGAAGCTCCTCGAAATAACCGTCGAATCCATCAGGTCGCCCA
AATTGGAGACGGTTTGACTACCCCTTTGGAAAGTCCATCGAACAACTATT
CATCTGATAGATCCCTTCCCCAAACGAAACTTGAGGAGGGAGAACAGGAT
GTAGACTACTGGGAGTTAAAGAAGGTTTTTCAAAAACTTGACCTCTCCGA
CCAGATCGTCCTCTACCGCTCCTTTCGTCTCCTTCCCGCCGCCTGCTACA
CCCTTTGGCGAAGTACAAGGAAACGGCTCGACTTCCGCACTCTTCATAAG
GATCTTGGCGAGGAATCCCAGAGACATCTTATCGTTCACATGAAGGATCA
TTTTAAGTACGTTTACTTCGTCGCAGATAGACTGCAGGAAAACCTTATTG
TTTTGGAAAAAGCAGGAGTCAAGTCGATAGTATCTGGTCAACGCTGCGAA
CTGCTGATGGAAGAAAAGGTTAAGTC
BS14227.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31819-PA | 1494 | CG31819-RA | 1..560 | 17..576 | 2750 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31819-RA | 1690 | CG31819-RA | 130..689 | 17..576 | 2770 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16211588..16212059 | 17..488 | 2360 | 100 | Plus |
2L | 23513712 | 2L | 16212116..16212206 | 486..576 | 425 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:04:48 has no hits.
BS14227.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:18 Download gff for
BS14227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31819-PA | 1..560 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:41 Download gff for
BS14227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31819-RA | 126..689 | 13..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:01:43 Download gff for
BS14227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31819-RA | 126..689 | 13..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:01:43 Download gff for
BS14227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16211584..16212058 | 13..487 | 99 | -> | Plus |
2L | 16212118..16212206 | 488..576 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:41 Download gff for
BS14227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16211584..16212058 | 13..487 | 99 | -> | Plus |
arm_2L | 16212118..16212206 | 488..576 | 97 | | Plus |
BS14227.complete Sequence
1526 bp assembled on 2009-08-24
GenBank Submission: KX800778
> BS14227.complete
GAAGTTATCAGTCGACATGTTGAGCCGTAGTCCTAGACTATTGAAGAATC
CAGAGAGGAAACAGCGTCTGCCAAAATTCCAAGTTGGAAACGGATCGGTG
ATCGAGATGGAAGCTCCTCGAAATAACCGTCGAATCCATCAGGTCGCCCA
AATTGGAGACGGTTTGACTACCCCTTTGGAAAGTCCATCGAACAACTATT
CATCTGATAGATCCCTTCCCCAAACGAAACTTGAGGAGGGAGAACAGGAT
GTAGACTACTGGGAGTTAAAGAAGGTTTTTCAAAAACTTGACCTCTCCGA
CCAGATCGTCCTCTACCGCTCCTTTCGTCTCCTTCCCGCCGCCTGCTACA
CCCTTTGGCGAAGTACAAGGAAACGGCTCGACTTCCGCACTCTTCATAAG
GATCTTGGCGAGGAATCCCAGAGACATCTTATCGTTCACATGAAGGATCA
TTTTAAGTACGTTTACTTCGTCGCAGATAGACTGCAGGAAAACCTTAATG
TTTTGGAAAAAGCAGGAGTCAAGTCGATAGTATCTGTTCAACGCTGCGAA
CTGCTGATGGAAGAAAAGGTTAAGTCTAGCAGTCAACAATCTGGAGAAGA
TTTTGGTGGAAATAGAATGGCTCAGTGGCCACTGCATGCTCTTCCCAAAT
TGATGAGAAATTTGCGCCGTCTGACGGCCGATTGTGAAATCCAGGTGCAC
TTCATCGAACATTTTAAGGAACTGGAGTTACTAGTGCTCAATGGATTCAT
TTCGCAGACTGCTCTCACTGGGATCTTAGAGCGGTGCCACAAATTGACCA
GATTATTTCTTCGATTCGATTGCGATACACTGAGCTTGAAGCTCATTGAT
AAGTGTTCCAATCTGAGAGACCTATCGTTGACCACAGGACTGTTTTTTCA
CCAAAAGGACCTTGTCATGAAACTGACTGATCTTCGACTGTTGGAGTTAA
CACAATGTGAAACGAGAAGTCAGCTGACACTTGAGTGCATGCAATTTATA
CTGAATAGACGGAAAGATTCTGTGCAACTGATTCAAATAGATTGCAAAGG
CTTTCAGGATCCCAATTGGATGAAGGAGGTCGGGTTGGATCGGTGCTCTC
GATTGCGGGGATTGGTCCTGGCAAACTGCTACTTCTGCGACCGCGAGATT
AGCCGGCTCTTGTTTCCAAGAGTTCAGAAATACATTGCTCTAATTAATTG
CCCTGATATTAAGGACTACCAGTTGATAGATATGGTGCGAATGTGTCCCG
GTCTCAACGATATCTACTTGCTGGACTGTCCCCAGTTGAGCTGGAAGGTC
CTTCAAGGTATTTACCGAATCCGGAGGAGTGAAAATCTTAGCTATCCCAT
TACCATTATCCTCAGTCAACACTCTGAACTCAGGGATGCCTATCAGTCCA
TGTACTCAAACTTCTGGTGCTTCAAGCTCCCTTTCCTCAGAATGGAACGC
GTAATTCATCAATGTCGACCGATTAGAGATATTCAATTTTTTTTCAATAG
CAGCGAATAGAAGCTTTCTAGACCAT
BS14227.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31819-RA | 1494 | CG31819-PA | 1..1494 | 17..1510 | 7470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31819-RA | 1690 | CG31819-RA | 130..1623 | 17..1510 | 7470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16212116..16213032 | 486..1402 | 4585 | 100 | Plus |
2L | 23513712 | 2L | 16211588..16212059 | 17..488 | 2360 | 100 | Plus |
2L | 23513712 | 2L | 16213129..16213237 | 1402..1510 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:28:39 has no hits.
BS14227.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:50 Download gff for
BS14227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31819-RA | 135..1623 | 22..1510 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:44 Download gff for
BS14227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31819-RA | 135..1623 | 22..1510 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:27 Download gff for
BS14227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31819-RA | 135..1623 | 22..1510 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:27 Download gff for
BS14227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16211593..16212058 | 22..487 | 100 | -> | Plus |
2L | 16212118..16213032 | 488..1402 | 100 | -> | Plus |
2L | 16213130..16213237 | 1403..1510 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:44 Download gff for
BS14227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16211593..16212058 | 22..487 | 100 | -> | Plus |
arm_2L | 16212118..16213032 | 488..1402 | 100 | -> | Plus |
arm_2L | 16213130..16213237 | 1403..1510 | 100 | | Plus |
BS14227.pep Sequence
Translation from 16 to 1509
> BS14227.pep
MLSRSPRLLKNPERKQRLPKFQVGNGSVIEMEAPRNNRRIHQVAQIGDGL
TTPLESPSNNYSSDRSLPQTKLEEGEQDVDYWELKKVFQKLDLSDQIVLY
RSFRLLPAACYTLWRSTRKRLDFRTLHKDLGEESQRHLIVHMKDHFKYVY
FVADRLQENLNVLEKAGVKSIVSVQRCELLMEEKVKSSSQQSGEDFGGNR
MAQWPLHALPKLMRNLRRLTADCEIQVHFIEHFKELELLVLNGFISQTAL
TGILERCHKLTRLFLRFDCDTLSLKLIDKCSNLRDLSLTTGLFFHQKDLV
MKLTDLRLLELTQCETRSQLTLECMQFILNRRKDSVQLIQIDCKGFQDPN
WMKEVGLDRCSRLRGLVLANCYFCDREISRLLFPRVQKYIALINCPDIKD
YQLIDMVRMCPGLNDIYLLDCPQLSWKVLQGIYRIRRSENLSYPITIILS
QHSELRDAYQSMYSNFWCFKLPFLRMERVIHQCRPIRDIQFFFNSSE*
BS14227.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31819-PA | 497 | CG31819-PA | 1..497 | 1..497 | 2608 | 100 | Plus |
CG14316-PA | 430 | CG14316-PA | 1..411 | 54..477 | 420 | 28.1 | Plus |