Clone BS14227 Report

Search the DGRC for BS14227

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG31819-RA
Protein status:BS14227.pep: full length peptide match
Sequenced Size:1526

Clone Sequence Records

BS14227.3prime Sequence

591 bp (540 high quality bases) assembled on 2006-10-13

> BS14227.3prime
ATGGTCTAGAAAGCTTCTATTCGCTGCTATTGAAAAAAAATTGAATATCT
CTAATCGGTCGACATTGATGAATTACGCGTTCCATTCTGAGGAAAGGGAG
CTTGAAGCACCAGAAGTTTGAGTACATGGACTGATAGGCATCCCTGAGTT
CAGAGTGTTGACTGAGGATAATGGTAATGGGATAGCTAAGATTTTCACTC
CTCCGGATTCGGTAAATACCTTGAAGGACCTTCCAGCTCAACTGGGGACA
GTCCAGCAAGTAGATATCGTTGAGACCGGGACACATTCGCACCATATCTA
TCAACTGGTAGTCCTTAATATCAGGGCAATTAATTAGAGCAATGTATTTC
TGAACTCTTGGAAACAAGAGCCGGCTAATCTCGCGGTCGCAGAAGTAGCA
GTTTGCCAGGACCAATCCCCGCAATCGAGAGCACCGATCCAACCCGACCT
CCTTCATCCAATTGGGATCCTGAAAGCCTTTGCAATCTATTTGAATCAGT
TGCACAGAATCTTTCCGTCTATTCAGTATAAATTGCATGCACTCAAGTGT
CAGCTGACTTCTCGTTTCACATTGTGTTAACTCCCACAGTC

BS14227.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31819-PA 1494 CG31819-RA 920..1494 591..17 2850 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31819-RA 1690 CG31819-RA 1049..1623 591..17 2860 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16212566..16213032 591..125 2320 99.8 Minus
2L 23513712 2L 16213129..16213237 125..17 545 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:21:15 has no hits.

BS14227.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:17 Download gff for BS14227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31819-PA 920..1494 17..591 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:39:49 Download gff for BS14227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 1049..1632 5..591 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:59 Download gff for BS14227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 1049..1632 5..591 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:59 Download gff for BS14227.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16212566..16213032 125..591 99 -> Minus
2L 16213130..16213246 5..124 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:39:49 Download gff for BS14227.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16212566..16213032 125..591 99 -> Minus
arm_2L 16213130..16213246 5..124 95   Minus

BS14227.5prime Sequence

576 bp (495 high quality bases) assembled on 2006-10-13

> BS14227.5prime
GAAGTTATCAGTCGACATGTTGAGCCGTAGTCCTAGACTATTGAAGAATC
CAGAGAGGAAACAGCGTCTGCCAAAATTCCAAGTTGGAAACGGATCGGTG
ATCGAGATGGAAGCTCCTCGAAATAACCGTCGAATCCATCAGGTCGCCCA
AATTGGAGACGGTTTGACTACCCCTTTGGAAAGTCCATCGAACAACTATT
CATCTGATAGATCCCTTCCCCAAACGAAACTTGAGGAGGGAGAACAGGAT
GTAGACTACTGGGAGTTAAAGAAGGTTTTTCAAAAACTTGACCTCTCCGA
CCAGATCGTCCTCTACCGCTCCTTTCGTCTCCTTCCCGCCGCCTGCTACA
CCCTTTGGCGAAGTACAAGGAAACGGCTCGACTTCCGCACTCTTCATAAG
GATCTTGGCGAGGAATCCCAGAGACATCTTATCGTTCACATGAAGGATCA
TTTTAAGTACGTTTACTTCGTCGCAGATAGACTGCAGGAAAACCTTATTG
TTTTGGAAAAAGCAGGAGTCAAGTCGATAGTATCTGGTCAACGCTGCGAA
CTGCTGATGGAAGAAAAGGTTAAGTC

BS14227.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31819-PA 1494 CG31819-RA 1..560 17..576 2750 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31819-RA 1690 CG31819-RA 130..689 17..576 2770 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16211588..16212059 17..488 2360 100 Plus
2L 23513712 2L 16212116..16212206 486..576 425 97.8 Plus
Blast to na_te.dros performed on 2015-02-11 19:04:48 has no hits.

BS14227.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:18 Download gff for BS14227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31819-PA 1..560 17..576 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:41 Download gff for BS14227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 126..689 13..576 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:01:43 Download gff for BS14227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 126..689 13..576 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:01:43 Download gff for BS14227.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16211584..16212058 13..487 99 -> Plus
2L 16212118..16212206 488..576 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:41 Download gff for BS14227.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16211584..16212058 13..487 99 -> Plus
arm_2L 16212118..16212206 488..576 97   Plus

BS14227.complete Sequence

1526 bp assembled on 2009-08-24

GenBank Submission: KX800778

> BS14227.complete
GAAGTTATCAGTCGACATGTTGAGCCGTAGTCCTAGACTATTGAAGAATC
CAGAGAGGAAACAGCGTCTGCCAAAATTCCAAGTTGGAAACGGATCGGTG
ATCGAGATGGAAGCTCCTCGAAATAACCGTCGAATCCATCAGGTCGCCCA
AATTGGAGACGGTTTGACTACCCCTTTGGAAAGTCCATCGAACAACTATT
CATCTGATAGATCCCTTCCCCAAACGAAACTTGAGGAGGGAGAACAGGAT
GTAGACTACTGGGAGTTAAAGAAGGTTTTTCAAAAACTTGACCTCTCCGA
CCAGATCGTCCTCTACCGCTCCTTTCGTCTCCTTCCCGCCGCCTGCTACA
CCCTTTGGCGAAGTACAAGGAAACGGCTCGACTTCCGCACTCTTCATAAG
GATCTTGGCGAGGAATCCCAGAGACATCTTATCGTTCACATGAAGGATCA
TTTTAAGTACGTTTACTTCGTCGCAGATAGACTGCAGGAAAACCTTAATG
TTTTGGAAAAAGCAGGAGTCAAGTCGATAGTATCTGTTCAACGCTGCGAA
CTGCTGATGGAAGAAAAGGTTAAGTCTAGCAGTCAACAATCTGGAGAAGA
TTTTGGTGGAAATAGAATGGCTCAGTGGCCACTGCATGCTCTTCCCAAAT
TGATGAGAAATTTGCGCCGTCTGACGGCCGATTGTGAAATCCAGGTGCAC
TTCATCGAACATTTTAAGGAACTGGAGTTACTAGTGCTCAATGGATTCAT
TTCGCAGACTGCTCTCACTGGGATCTTAGAGCGGTGCCACAAATTGACCA
GATTATTTCTTCGATTCGATTGCGATACACTGAGCTTGAAGCTCATTGAT
AAGTGTTCCAATCTGAGAGACCTATCGTTGACCACAGGACTGTTTTTTCA
CCAAAAGGACCTTGTCATGAAACTGACTGATCTTCGACTGTTGGAGTTAA
CACAATGTGAAACGAGAAGTCAGCTGACACTTGAGTGCATGCAATTTATA
CTGAATAGACGGAAAGATTCTGTGCAACTGATTCAAATAGATTGCAAAGG
CTTTCAGGATCCCAATTGGATGAAGGAGGTCGGGTTGGATCGGTGCTCTC
GATTGCGGGGATTGGTCCTGGCAAACTGCTACTTCTGCGACCGCGAGATT
AGCCGGCTCTTGTTTCCAAGAGTTCAGAAATACATTGCTCTAATTAATTG
CCCTGATATTAAGGACTACCAGTTGATAGATATGGTGCGAATGTGTCCCG
GTCTCAACGATATCTACTTGCTGGACTGTCCCCAGTTGAGCTGGAAGGTC
CTTCAAGGTATTTACCGAATCCGGAGGAGTGAAAATCTTAGCTATCCCAT
TACCATTATCCTCAGTCAACACTCTGAACTCAGGGATGCCTATCAGTCCA
TGTACTCAAACTTCTGGTGCTTCAAGCTCCCTTTCCTCAGAATGGAACGC
GTAATTCATCAATGTCGACCGATTAGAGATATTCAATTTTTTTTCAATAG
CAGCGAATAGAAGCTTTCTAGACCAT

BS14227.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31819-RA 1494 CG31819-PA 1..1494 17..1510 7470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31819-RA 1690 CG31819-RA 130..1623 17..1510 7470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16212116..16213032 486..1402 4585 100 Plus
2L 23513712 2L 16211588..16212059 17..488 2360 100 Plus
2L 23513712 2L 16213129..16213237 1402..1510 545 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:28:39 has no hits.

BS14227.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:50 Download gff for BS14227.complete
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 135..1623 22..1510 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:44 Download gff for BS14227.complete
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 135..1623 22..1510 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:27 Download gff for BS14227.complete
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 135..1623 22..1510 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:27 Download gff for BS14227.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16211593..16212058 22..487 100 -> Plus
2L 16212118..16213032 488..1402 100 -> Plus
2L 16213130..16213237 1403..1510 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:44 Download gff for BS14227.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16211593..16212058 22..487 100 -> Plus
arm_2L 16212118..16213032 488..1402 100 -> Plus
arm_2L 16213130..16213237 1403..1510 100   Plus

BS14227.pep Sequence

Translation from 16 to 1509

> BS14227.pep
MLSRSPRLLKNPERKQRLPKFQVGNGSVIEMEAPRNNRRIHQVAQIGDGL
TTPLESPSNNYSSDRSLPQTKLEEGEQDVDYWELKKVFQKLDLSDQIVLY
RSFRLLPAACYTLWRSTRKRLDFRTLHKDLGEESQRHLIVHMKDHFKYVY
FVADRLQENLNVLEKAGVKSIVSVQRCELLMEEKVKSSSQQSGEDFGGNR
MAQWPLHALPKLMRNLRRLTADCEIQVHFIEHFKELELLVLNGFISQTAL
TGILERCHKLTRLFLRFDCDTLSLKLIDKCSNLRDLSLTTGLFFHQKDLV
MKLTDLRLLELTQCETRSQLTLECMQFILNRRKDSVQLIQIDCKGFQDPN
WMKEVGLDRCSRLRGLVLANCYFCDREISRLLFPRVQKYIALINCPDIKD
YQLIDMVRMCPGLNDIYLLDCPQLSWKVLQGIYRIRRSENLSYPITIILS
QHSELRDAYQSMYSNFWCFKLPFLRMERVIHQCRPIRDIQFFFNSSE*

BS14227.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31819-PA 497 CG31819-PA 1..497 1..497 2608 100 Plus
CG14316-PA 430 CG14316-PA 1..411 54..477 420 28.1 Plus