Clone BS14231 Report

Search the DGRC for BS14231

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:31
Vector:pDNR-Dual
Associated Gene/Transcripthid-RA
Protein status:BS14231.pep: full length peptide match
Sequenced Size:1265

Clone Sequence Records

BS14231.3prime Sequence

398 bp (386 high quality bases) assembled on 2006-10-13

> BS14231.3prime
ATGGTCTAGAAAGCTTTCATCGCGCCGCAAAGAAGCCACAGCCCATGGCC
AAAACGAAAACGGTCACAACAGTTGGCCAAGTGAAGCTCTGTGGTTTCTT
CTTCTCGGCCTTCGCCTTTTGTCGTTCTCGCTCCACCTGTCGCTGCTGAC
TGATGTGGCCATGGATGGCACCGCTCTCCGCTTGGGATGTACCACCGGGC
TGGCTATCGGTATGGCAGACTGGATTATTGCTGCTGCTCGAGTGGCTATT
GGAGCTCTTCTTCTTCCGGGGCGGGATGCGTCCATTGAACTCCTGCAGAC
GCTCCCGGCCGGCCGTAAAGTTGTCGTAGCGATCGCCAAACTCGTCCCAA
GTGGCCTCATGATCGCTCTGGTACTCGCGCTCATCCTCGCCCGTCGAG

BS14231.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5123-PA 1233 W-RA 852..1233 398..17 1910 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
hid-RB 2190 CG5123-RB 1371..1756 398..13 1930 100 Minus
hid-RA 4018 CG5123-RA 1371..1756 398..13 1930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18172060..18172360 98..398 1505 100 Plus
3L 28110227 3L 18170007..18170093 13..99 435 100 Plus
Blast to na_te.dros performed on 2015-02-11 19:04:56 has no hits.

BS14231.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:19 Download gff for BS14231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5123-PA 852..1233 17..398 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:43 Download gff for BS14231.3prime
Subject Subject Range Query Range Percent Splice Strand
W-RA 1371..1760 6..398 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:00 Download gff for BS14231.3prime
Subject Subject Range Query Range Percent Splice Strand
hid-RA 1371..1760 6..398 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:00 Download gff for BS14231.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18170003..18170091 6..97 95 <- Plus
3L 18172060..18172360 98..398 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:43 Download gff for BS14231.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18163103..18163191 6..97 95 <- Plus
arm_3L 18165160..18165460 98..398 100   Plus

BS14231.5prime Sequence

373 bp (363 high quality bases) assembled on 2006-10-13

> BS14231.5prime
GAAGTTATCAGTCGACATGGCCGTGCCCTTTTATTTGCCCGAGGGCGGCG
CCGATGACGTAGCGTCGAGTTCATCGGGAGCCTCGGGCAACTCCTCCCCC
CACAACCACCCACTTCCCTCGAGCGCATCCTCGTCCGTCTCCTCCTCGGG
CGTGTCCTCGGCCTCCGCCTCCTCGGCCTCATCTTCGTCCTCCGCATCGT
CGGACGGCGCCAGCAGCGCCGCCTCGCAATCGCCGAACACCACCACCTCG
TCGGCCACGCAGACGCCGATGCAGTCTCCACTGCCCACCGACCAAGTGCT
ATACGCCCTCTACGAGTGGGTCAGGATGTACCAGAGCCAGCAGAGTGCCC
CGCAAATCTTCCAGTATCCGCCG

BS14231.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5123-PA 1233 W-RA 1..357 17..373 1785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
hid-RB 2190 CG5123-RB 520..876 17..373 1785 100 Plus
hid-RA 4018 CG5123-RA 520..876 17..373 1785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18184792..18185122 347..17 1655 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:07:53 has no hits.

BS14231.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:19 Download gff for BS14231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5123-PA 1..357 17..373 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:56:21 Download gff for BS14231.5prime
Subject Subject Range Query Range Percent Splice Strand
W-RA 514..876 9..373 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:26 Download gff for BS14231.5prime
Subject Subject Range Query Range Percent Splice Strand
hid-RA 514..876 9..373 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:26 Download gff for BS14231.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18173529..18173554 348..373 100 <- Minus
3L 18184792..18185126 9..347 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:56:21 Download gff for BS14231.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18166629..18166654 348..373 100 <- Minus
arm_3L 18177892..18178226 9..347 98   Minus

BS14231.complete Sequence

1265 bp assembled on 2010-05-13

GenBank Submission: KX801107

> BS14231.complete
GAAGTTATCAGTCGACATGGCCGTGCCCTTTTATTTGCCCGAGGGCGGCG
CCGATGACGTAGCGTCGAGTTCATCGGGAGCCTCGGGCAACTCCTCCCCC
CACAACCACCCACTTCCCTCGAGCGCATCCTCGTCCGTCTCCTCCTCGGG
CGTGTCCTCGGCCTCCGCCTCCTCGGCCTCATCTTCGTCCTCCGCATCGT
CGGACGGCGCCAGCAGCGCCGCCTCGCAATCGCCGAACACCACCACCTCG
TCGGCCACGCAGACGCCGATGCAGTCTCCACTGCCCACCGACCAAGTGCT
ATACGCCCTCTACGAGTGGGTCAGGATGTACCAGAGCCAGCAGAGTGCCC
CGCAAATCTTCCAGTATCCGCCGCCAAGCCCCTCTTGCAATTTCACGGGC
GGCGATGTGTTCTTTCCGCACGGCCATCCGAATCCGAACTCGAATCCCCA
TCCGCGCACCCCCCGAACCAGCGTGAGCTTCTCCTCCGGCGAGGAGTACA
ACTTCTTCCGGCAGCAGCAGCCGCAACCACATCCGTCATATCCGGCGCCA
TCAACACCGCAGCCAATGCCACCGCAGTCAGCGCCGCCGATGCACTGCAG
CCACAGCTACCCGCAGCAGTCGGCGCACATGATGCCACACCATTCCGCTC
CCTTCGGAATGGGCGGTACCTACTACGCGGGCTACACGCCGCCACCCACT
CCGAACACGGCCAGTGCGGGCACCTCCAGCTCATCGGCGGCCTTCGGCTG
GCACGGCCACCCCCACAGCCCCTTCACGTCGACCTCCACGCCGTTATCGG
CGCCAGTGGCGCCCAAGATGCGCCTGCAGCGCAGCCAGTCGGATGCGGCC
AGACGCAAGCGATTGACCTCGACGGGCGAGGATGAGCGCGAGTACCAGAG
CGATCATGAGGCCACTTGGGACGAGTTTGGCGATCGCTACGACAACTTTA
CGGCCGGCCGGGAGCGTCTGCAGGAGTTCAATGGACGCATCCCGCCCCGG
AAGAAGAAGAGCTCCAATAGCCACTCGAGCAGCAGCAATAATCCAGTCTG
CCATACCGATAGCCAGCCCGGTGGTACATCCCAAGCGGAGAGCGGTGCCA
TCCATGGCCACATCAGTCAGCAGCGACAGGTGGAGCGAGAACGACAAAAG
GCGAAGGCCGAGAAGAAGAAACCACAGAGCTTCACTTGGCCAACTGTTGT
GACCGTTTTCGTTTTGGCCATGGGCTGTGGCTTCTTTGCGGCGCGATGAA
AGCTTTCTAGACCAT

BS14231.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
hid-RB 1233 CG5123-PB 1..1233 17..1249 6165 100 Plus
hid-RA 1233 CG5123-PA 1..1233 17..1249 6165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
hid-RB 2190 CG5123-RB 520..1756 17..1253 6185 100 Plus
hid-RA 4018 CG5123-RA 520..1756 17..1253 6185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18173047..18173555 855..347 2545 100 Minus
3L 28110227 3L 18184792..18185122 347..17 1655 100 Minus
3L 28110227 3L 18172060..18172373 1168..855 1570 100 Minus
3L 28110227 3L 18170007..18170093 1253..1167 435 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:14:22 has no hits.

BS14231.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 13:55:37 Download gff for BS14231.complete
Subject Subject Range Query Range Percent Splice Strand
W-RA 516..1747 17..1248 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:28 Download gff for BS14231.complete
Subject Subject Range Query Range Percent Splice Strand
W-RA 520..1751 17..1248 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:54 Download gff for BS14231.complete
Subject Subject Range Query Range Percent Splice Strand
hid-RA 520..1751 17..1248 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:54 Download gff for BS14231.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18170012..18170091 1169..1248 100 <- Minus
3L 18172060..18172372 856..1168 100 <- Minus
3L 18173047..18173554 348..855 100 <- Minus
3L 18184792..18185122 17..347 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:28 Download gff for BS14231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18163112..18163191 1169..1248 100 <- Minus
arm_3L 18165160..18165472 856..1168 100 <- Minus
arm_3L 18166147..18166654 348..855 100 <- Minus
arm_3L 18177892..18178222 17..347 100   Minus

BS14231.pep Sequence

Translation from 16 to 1248

> BS14231.pep
MAVPFYLPEGGADDVASSSSGASGNSSPHNHPLPSSASSSVSSSGVSSAS
ASSASSSSSASSDGASSAASQSPNTTTSSATQTPMQSPLPTDQVLYALYE
WVRMYQSQQSAPQIFQYPPPSPSCNFTGGDVFFPHGHPNPNSNPHPRTPR
TSVSFSSGEEYNFFRQQQPQPHPSYPAPSTPQPMPPQSAPPMHCSHSYPQ
QSAHMMPHHSAPFGMGGTYYAGYTPPPTPNTASAGTSSSSAAFGWHGHPH
SPFTSTSTPLSAPVAPKMRLQRSQSDAARRKRLTSTGEDEREYQSDHEAT
WDEFGDRYDNFTAGRERLQEFNGRIPPRKKKSSNSHSSSSNNPVCHTDSQ
PGGTSQAESGAIHGHISQQRQVERERQKAKAEKKKPQSFTWPTVVTVFVL
AMGCGFFAAR*

BS14231.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
hid-PB 410 CG5123-PB 1..410 1..410 2201 100 Plus
hid-PA 410 CG5123-PA 1..410 1..410 2201 100 Plus
Muc91C-PB 949 CG7709-PB 586..909 16..357 161 26.3 Plus
Muc91C-PA 950 CG7709-PA 587..910 16..357 161 26.3 Plus