Clone Sequence Records
BS14231.3prime Sequence
398 bp (386 high quality bases) assembled on 2006-10-13
> BS14231.3prime
ATGGTCTAGAAAGCTTTCATCGCGCCGCAAAGAAGCCACAGCCCATGGCC
AAAACGAAAACGGTCACAACAGTTGGCCAAGTGAAGCTCTGTGGTTTCTT
CTTCTCGGCCTTCGCCTTTTGTCGTTCTCGCTCCACCTGTCGCTGCTGAC
TGATGTGGCCATGGATGGCACCGCTCTCCGCTTGGGATGTACCACCGGGC
TGGCTATCGGTATGGCAGACTGGATTATTGCTGCTGCTCGAGTGGCTATT
GGAGCTCTTCTTCTTCCGGGGCGGGATGCGTCCATTGAACTCCTGCAGAC
GCTCCCGGCCGGCCGTAAAGTTGTCGTAGCGATCGCCAAACTCGTCCCAA
GTGGCCTCATGATCGCTCTGGTACTCGCGCTCATCCTCGCCCGTCGAG
BS14231.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:52:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5123-PA | 1233 | W-RA | 852..1233 | 398..17 | 1910 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hid-RB | 2190 | CG5123-RB | 1371..1756 | 398..13 | 1930 | 100 | Minus |
hid-RA | 4018 | CG5123-RA | 1371..1756 | 398..13 | 1930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18172060..18172360 | 98..398 | 1505 | 100 | Plus |
3L | 28110227 | 3L | 18170007..18170093 | 13..99 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:04:56 has no hits.
BS14231.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:19 Download gff for
BS14231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5123-PA | 852..1233 | 17..398 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:43 Download gff for
BS14231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
W-RA | 1371..1760 | 6..398 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:00 Download gff for
BS14231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hid-RA | 1371..1760 | 6..398 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:00 Download gff for
BS14231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18170003..18170091 | 6..97 | 95 | <- | Plus |
3L | 18172060..18172360 | 98..398 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:43 Download gff for
BS14231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18163103..18163191 | 6..97 | 95 | <- | Plus |
arm_3L | 18165160..18165460 | 98..398 | 100 | | Plus |
BS14231.5prime Sequence
373 bp (363 high quality bases) assembled on 2006-10-13
> BS14231.5prime
GAAGTTATCAGTCGACATGGCCGTGCCCTTTTATTTGCCCGAGGGCGGCG
CCGATGACGTAGCGTCGAGTTCATCGGGAGCCTCGGGCAACTCCTCCCCC
CACAACCACCCACTTCCCTCGAGCGCATCCTCGTCCGTCTCCTCCTCGGG
CGTGTCCTCGGCCTCCGCCTCCTCGGCCTCATCTTCGTCCTCCGCATCGT
CGGACGGCGCCAGCAGCGCCGCCTCGCAATCGCCGAACACCACCACCTCG
TCGGCCACGCAGACGCCGATGCAGTCTCCACTGCCCACCGACCAAGTGCT
ATACGCCCTCTACGAGTGGGTCAGGATGTACCAGAGCCAGCAGAGTGCCC
CGCAAATCTTCCAGTATCCGCCG
BS14231.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:53:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5123-PA | 1233 | W-RA | 1..357 | 17..373 | 1785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hid-RB | 2190 | CG5123-RB | 520..876 | 17..373 | 1785 | 100 | Plus |
hid-RA | 4018 | CG5123-RA | 520..876 | 17..373 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18184792..18185122 | 347..17 | 1655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:07:53 has no hits.
BS14231.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:19 Download gff for
BS14231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5123-PA | 1..357 | 17..373 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:56:21 Download gff for
BS14231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
W-RA | 514..876 | 9..373 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:26 Download gff for
BS14231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hid-RA | 514..876 | 9..373 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:26 Download gff for
BS14231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18173529..18173554 | 348..373 | 100 | <- | Minus |
3L | 18184792..18185126 | 9..347 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:56:21 Download gff for
BS14231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18166629..18166654 | 348..373 | 100 | <- | Minus |
arm_3L | 18177892..18178226 | 9..347 | 98 | | Minus |
BS14231.complete Sequence
1265 bp assembled on 2010-05-13
GenBank Submission: KX801107
> BS14231.complete
GAAGTTATCAGTCGACATGGCCGTGCCCTTTTATTTGCCCGAGGGCGGCG
CCGATGACGTAGCGTCGAGTTCATCGGGAGCCTCGGGCAACTCCTCCCCC
CACAACCACCCACTTCCCTCGAGCGCATCCTCGTCCGTCTCCTCCTCGGG
CGTGTCCTCGGCCTCCGCCTCCTCGGCCTCATCTTCGTCCTCCGCATCGT
CGGACGGCGCCAGCAGCGCCGCCTCGCAATCGCCGAACACCACCACCTCG
TCGGCCACGCAGACGCCGATGCAGTCTCCACTGCCCACCGACCAAGTGCT
ATACGCCCTCTACGAGTGGGTCAGGATGTACCAGAGCCAGCAGAGTGCCC
CGCAAATCTTCCAGTATCCGCCGCCAAGCCCCTCTTGCAATTTCACGGGC
GGCGATGTGTTCTTTCCGCACGGCCATCCGAATCCGAACTCGAATCCCCA
TCCGCGCACCCCCCGAACCAGCGTGAGCTTCTCCTCCGGCGAGGAGTACA
ACTTCTTCCGGCAGCAGCAGCCGCAACCACATCCGTCATATCCGGCGCCA
TCAACACCGCAGCCAATGCCACCGCAGTCAGCGCCGCCGATGCACTGCAG
CCACAGCTACCCGCAGCAGTCGGCGCACATGATGCCACACCATTCCGCTC
CCTTCGGAATGGGCGGTACCTACTACGCGGGCTACACGCCGCCACCCACT
CCGAACACGGCCAGTGCGGGCACCTCCAGCTCATCGGCGGCCTTCGGCTG
GCACGGCCACCCCCACAGCCCCTTCACGTCGACCTCCACGCCGTTATCGG
CGCCAGTGGCGCCCAAGATGCGCCTGCAGCGCAGCCAGTCGGATGCGGCC
AGACGCAAGCGATTGACCTCGACGGGCGAGGATGAGCGCGAGTACCAGAG
CGATCATGAGGCCACTTGGGACGAGTTTGGCGATCGCTACGACAACTTTA
CGGCCGGCCGGGAGCGTCTGCAGGAGTTCAATGGACGCATCCCGCCCCGG
AAGAAGAAGAGCTCCAATAGCCACTCGAGCAGCAGCAATAATCCAGTCTG
CCATACCGATAGCCAGCCCGGTGGTACATCCCAAGCGGAGAGCGGTGCCA
TCCATGGCCACATCAGTCAGCAGCGACAGGTGGAGCGAGAACGACAAAAG
GCGAAGGCCGAGAAGAAGAAACCACAGAGCTTCACTTGGCCAACTGTTGT
GACCGTTTTCGTTTTGGCCATGGGCTGTGGCTTCTTTGCGGCGCGATGAA
AGCTTTCTAGACCAT
BS14231.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hid-RB | 1233 | CG5123-PB | 1..1233 | 17..1249 | 6165 | 100 | Plus |
hid-RA | 1233 | CG5123-PA | 1..1233 | 17..1249 | 6165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hid-RB | 2190 | CG5123-RB | 520..1756 | 17..1253 | 6185 | 100 | Plus |
hid-RA | 4018 | CG5123-RA | 520..1756 | 17..1253 | 6185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18173047..18173555 | 855..347 | 2545 | 100 | Minus |
3L | 28110227 | 3L | 18184792..18185122 | 347..17 | 1655 | 100 | Minus |
3L | 28110227 | 3L | 18172060..18172373 | 1168..855 | 1570 | 100 | Minus |
3L | 28110227 | 3L | 18170007..18170093 | 1253..1167 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:14:22 has no hits.
BS14231.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 13:55:37 Download gff for
BS14231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
W-RA | 516..1747 | 17..1248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:28 Download gff for
BS14231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
W-RA | 520..1751 | 17..1248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:54 Download gff for
BS14231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hid-RA | 520..1751 | 17..1248 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:54 Download gff for
BS14231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18170012..18170091 | 1169..1248 | 100 | <- | Minus |
3L | 18172060..18172372 | 856..1168 | 100 | <- | Minus |
3L | 18173047..18173554 | 348..855 | 100 | <- | Minus |
3L | 18184792..18185122 | 17..347 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:28 Download gff for
BS14231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18163112..18163191 | 1169..1248 | 100 | <- | Minus |
arm_3L | 18165160..18165472 | 856..1168 | 100 | <- | Minus |
arm_3L | 18166147..18166654 | 348..855 | 100 | <- | Minus |
arm_3L | 18177892..18178222 | 17..347 | 100 | | Minus |
BS14231.pep Sequence
Translation from 16 to 1248
> BS14231.pep
MAVPFYLPEGGADDVASSSSGASGNSSPHNHPLPSSASSSVSSSGVSSAS
ASSASSSSSASSDGASSAASQSPNTTTSSATQTPMQSPLPTDQVLYALYE
WVRMYQSQQSAPQIFQYPPPSPSCNFTGGDVFFPHGHPNPNSNPHPRTPR
TSVSFSSGEEYNFFRQQQPQPHPSYPAPSTPQPMPPQSAPPMHCSHSYPQ
QSAHMMPHHSAPFGMGGTYYAGYTPPPTPNTASAGTSSSSAAFGWHGHPH
SPFTSTSTPLSAPVAPKMRLQRSQSDAARRKRLTSTGEDEREYQSDHEAT
WDEFGDRYDNFTAGRERLQEFNGRIPPRKKKSSNSHSSSSNNPVCHTDSQ
PGGTSQAESGAIHGHISQQRQVERERQKAKAEKKKPQSFTWPTVVTVFVL
AMGCGFFAAR*
BS14231.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hid-PB | 410 | CG5123-PB | 1..410 | 1..410 | 2201 | 100 | Plus |
hid-PA | 410 | CG5123-PA | 1..410 | 1..410 | 2201 | 100 | Plus |
Muc91C-PB | 949 | CG7709-PB | 586..909 | 16..357 | 161 | 26.3 | Plus |
Muc91C-PA | 950 | CG7709-PA | 587..910 | 16..357 | 161 | 26.3 | Plus |