Clone Sequence Records
BS14233.3prime Sequence
615 bp (591 high quality bases) assembled on 2006-10-13
> BS14233.3prime
ATGGTCTAGAAAGCTTTTATGATGCATTTCCACCTGGGGAATTCTCACTG
CCCACTGCCGACGGTCCATCCTCGCTGTCCTCGTCATTGTCTTCCACGAC
GTCATCCCCATTAATCGGTGTCGTCTGAACCCAACTGCCCTCTAACGGAG
ATCCCGTGGTTTTCGCGGCATTCGAAGCGAACCGGTAGATAATCTGTGCA
TAGAAGGTGAGCAGGAAGATGATGATGAAGTCGTGGAAGAGGATGAGCGA
GGCCAACAGGTGATCGTTCAGCCGCATCTCGGCAAAGCGTCCACCATTGA
TCGTCTGGGCATGATACATCACGAACAAGAGCACAATAAGGCTTATGAAG
ATCTGGAATACCACAAAGGAGTACGGCATATCGATCAGAATGTGCATCAT
GACAAAGAATACGGTGATGATCAGGAAAATAAAGGCCATTACAAACAATA
TTACAACGTCCAATGTAAGATCGTGTGGTATAATGGATCCCAGCAGCACA
AACATAAAGACAAACAGCACACAGATGATAAACCACATTATCAAGTCCTG
CCAGAGAGTTCTTGCCACCAGAGCGAACATACCAATTATTATAAACTCCA
CTATAAGCACGGTGA
BS14233.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12209-PA | 858 | CG12209-RA | 260..858 | 615..17 | 2920 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12209-RA | 1268 | CG12209-RA | 406..1004 | 615..17 | 2950 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10246335..10246644 | 17..326 | 1535 | 99.7 | Plus |
2R | 25286936 | 2R | 10246703..10246852 | 326..475 | 735 | 99.3 | Plus |
2R | 25286936 | 2R | 10246904..10247029 | 476..601 | 615 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:37:57 has no hits.
BS14233.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:21 Download gff for
BS14233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12209-PA | 261..858 | 17..614 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:16 Download gff for
BS14233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12209-RA | 407..1008 | 12..614 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:42 Download gff for
BS14233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12209-RA | 407..1008 | 12..614 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:42 Download gff for
BS14233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10246331..10246643 | 12..325 | 98 | <- | Plus |
2R | 10246703..10246852 | 326..475 | 99 | <- | Plus |
2R | 10246904..10247029 | 476..601 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:16 Download gff for
BS14233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6133836..6134148 | 12..325 | 98 | <- | Plus |
arm_2R | 6134208..6134357 | 326..475 | 99 | <- | Plus |
arm_2R | 6134409..6134534 | 476..601 | 99 | <- | Plus |
BS14233.5prime Sequence
654 bp (580 high quality bases) assembled on 2006-10-13
> BS14233.5prime
GAAGTTATCAGTCGACATGGAGGACCGCCGCCAGAGAATGCGGGCATATC
GGCGGGCCCGCCGGAAGTTTGCCTGCGTCGTCTACATGGTGACCATAGCC
TGGATGGTCCTGGCTATATTGCAATGGCTCCTGGTCAGCTTGATATCGGA
CATAAGTATGACCTTCACAAACTTTTACTGGATTAGCGTGATCTTCTTCG
CGCTGGCCATGGTGATGGTCACGGTGTTCATATTCTTCGAGAAGGTCCGA
TTCATCATTGGCCTCAACTGGCTAATCACCGTGCTTATAGTGGAGTTTAT
AATAATTGGTATGTTCGCTCTGGTGGCAAGAACTCTCTGGCAGGACTTGA
TAATGTGGTTTATCATCTGTGTGCTGTTTGTCTTTATGTTTGTGCTGCTG
GGATCCATTATACCACACGATCTTACATTGGACGTTGTAATATTGTTTGT
AATGGCCTTTATTTTCCTGATCATCACCGTATTCTTTGTCATGATGCACA
TTCTGATCGATATGCCGTACTCCTTTGTGGTATTCCAGATCTTCATAAGC
CTTATTGTGCTCTTGTTCGTGATGTATCATGCCCAGACGATCAATGGTGG
ACGCTTTGCCGAGATGCGGCTGAACGATCACCTGTTGGCCTCGCTCATCC
TCTT
BS14233.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12209-PA | 858 | CG12209-RA | 1..638 | 17..654 | 3015 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12209-RA | 1268 | CG12209-RA | 146..784 | 16..654 | 3090 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10246703..10246852 | 565..416 | 735 | 99.3 | Minus |
2R | 25286936 | 2R | 10247083..10247230 | 292..145 | 725 | 99.3 | Minus |
2R | 25286936 | 2R | 10246904..10247029 | 415..290 | 615 | 99.2 | Minus |
2R | 25286936 | 2R | 10247287..10247415 | 144..16 | 600 | 97.7 | Minus |
2R | 25286936 | 2R | 10246555..10246644 | 654..565 | 435 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:48:00 has no hits.
BS14233.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:21 Download gff for
BS14233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12209-PA | 1..638 | 17..654 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:52 Download gff for
BS14233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12209-RA | 140..784 | 9..654 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:55 Download gff for
BS14233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12209-RA | 140..784 | 9..654 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:55 Download gff for
BS14233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10246555..10246643 | 566..654 | 98 | <- | Minus |
2R | 10246703..10246852 | 416..565 | 99 | <- | Minus |
2R | 10246904..10247029 | 290..415 | 99 | <- | Minus |
2R | 10247086..10247230 | 145..289 | 99 | <- | Minus |
2R | 10247287..10247421 | 9..144 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:52 Download gff for
BS14233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6134060..6134148 | 566..654 | 98 | <- | Minus |
arm_2R | 6134208..6134357 | 416..565 | 99 | <- | Minus |
arm_2R | 6134409..6134534 | 290..415 | 99 | <- | Minus |
arm_2R | 6134591..6134735 | 145..289 | 99 | <- | Minus |
arm_2R | 6134792..6134926 | 9..144 | 95 | | Minus |
BS14233.complete Sequence
890 bp assembled on 2006-11-01
GenBank Submission: FJ637620
> BS14233.complete
GAAGTTATCAGTCGACATGGAGGACCGCCGCCAGAGAATGCGGGCATATC
GGCGGGCCCGCCGGAAGTTTGCCTGCGTCGTCTACATGGTGACCATAGCC
TGGATGGTCCTGGCTATATTGCAATGGCTCCTGGTCAGCTTGATATCGGA
CATAAGTATGACCTTCACAAACTTTTACTGGATTAGCGTGATCTTCTTCG
CGCTGGCCATGGTGATGGTCACGGTGTTCATATTCTTCGAGAAGGTCCGA
TTCATCATTGGCCTCAACTGGCTAATCACCGTGCTTATAGTGGAGTTTAT
AATAATTGGTATGTTCGCTCTGGTGGCAAGAACTCTCTGGCAGGACTTGA
TAATGTGGTTTATCATCTGTGTGCTGTTTGTCTTTATGTTTGTGCTGCTG
GGATCCATTATACCACACGATCTTACATTGGACGTTGTAATATTGTTTGT
AATGGCCTTTATTTTCCTGATCATCACCGTATTCTTTGTCATGATGCACA
TTCTGATCGATATGCCGTACTCCTTTGTGGTATTCCAGATCTTCATAAGC
CTTATTGTGCTCTTGTTCGTGATGTATCATGCCCAGACGATCAATGGTGG
ACGCTTTGCCGAGATGCGGCTGAACGATCACCTGTTGGCCTCGCTCATCC
TCTTCCACGACTTCATCATCATCTTCCTGCTCACCTTCTATGCACAGATT
ATCTACCGGTTCGCTTCGAATGCCGCGAAAACCACGGGATCTCCGTTAGA
GGGCAGTTGGGTTCAGACGACACCGATTAATGGGGATGACGTCGTGGAAG
ACAATGACGAGGACAGCGAGGATGGACCGTCGGCAGTGGGCAGTGAGAAT
TCCCCAGGTGGAAATGCATCATAAAAGCTTTCTAGACCAT
BS14233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12209-RA | 858 | CG12209-PA | 1..858 | 17..874 | 4185 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12209-RA | 1268 | CG12209-RA | 146..1004 | 16..874 | 4190 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:39:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10246335..10246644 | 874..565 | 1535 | 99.7 | Minus |
2R | 25286936 | 2R | 10246703..10246852 | 565..416 | 735 | 99.3 | Minus |
2R | 25286936 | 2R | 10247083..10247230 | 292..145 | 725 | 99.3 | Minus |
2R | 25286936 | 2R | 10246904..10247029 | 415..290 | 615 | 99.2 | Minus |
2R | 25286936 | 2R | 10247287..10247415 | 144..16 | 600 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:39:54 has no hits.
BS14233.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:38 Download gff for
BS14233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12209-RA | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:09 Download gff for
BS14233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12209-RA | 52..920 | 9..879 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:27 Download gff for
BS14233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12209-RA | 147..1002 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:38 Download gff for
BS14233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12209-RA | 52..920 | 9..879 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:48 Download gff for
BS14233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12209-RA | 147..1002 | 17..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:48 Download gff for
BS14233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10246337..10246643 | 566..872 | 99 | <- | Minus |
2R | 10246703..10246852 | 416..565 | 99 | <- | Minus |
2R | 10246904..10247029 | 290..415 | 99 | <- | Minus |
2R | 10247086..10247230 | 145..289 | 99 | <- | Minus |
2R | 10247287..10247414 | 17..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:27 Download gff for
BS14233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6133842..6134148 | 566..872 | 99 | <- | Minus |
arm_2R | 6134208..6134357 | 416..565 | 99 | <- | Minus |
arm_2R | 6134409..6134534 | 290..415 | 99 | <- | Minus |
arm_2R | 6134591..6134735 | 145..289 | 99 | <- | Minus |
arm_2R | 6134792..6134919 | 17..144 | 97 | | Minus |
BS14233.pep Sequence
Translation from 16 to 873
> BS14233.pep
MEDRRQRMRAYRRARRKFACVVYMVTIAWMVLAILQWLLVSLISDISMTF
TNFYWISVIFFALAMVMVTVFIFFEKVRFIIGLNWLITVLIVEFIIIGMF
ALVARTLWQDLIMWFIICVLFVFMFVLLGSIIPHDLTLDVVILFVMAFIF
LIITVFFVMMHILIDMPYSFVVFQIFISLIVLLFVMYHAQTINGGRFAEM
RLNDHLLASLILFHDFIIIFLLTFYAQIIYRFASNAAKTTGSPLEGSWVQ
TTPINGDDVVEDNDEDSEDGPSAVGSENSPGGNAS*
BS14233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12209-PA | 285 | CG12209-PA | 1..285 | 1..285 | 1450 | 100 | Plus |
CG42570-PB | 609 | CG42570-PB | 8..285 | 9..285 | 620 | 44.8 | Plus |
CG42570-PA | 610 | CG42570-PA | 8..301 | 9..281 | 620 | 43.9 | Plus |
CG34315-PB | 266 | CG34315-PB | 1..224 | 1..224 | 536 | 42.4 | Plus |
CG42571-PB | 292 | CG42571-PB | 8..266 | 15..266 | 414 | 34 | Plus |