Clone BS14233 Report

Search the DGRC for BS14233

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG12209-RA
Protein status:BS14233.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14233.3prime Sequence

615 bp (591 high quality bases) assembled on 2006-10-13

> BS14233.3prime
ATGGTCTAGAAAGCTTTTATGATGCATTTCCACCTGGGGAATTCTCACTG
CCCACTGCCGACGGTCCATCCTCGCTGTCCTCGTCATTGTCTTCCACGAC
GTCATCCCCATTAATCGGTGTCGTCTGAACCCAACTGCCCTCTAACGGAG
ATCCCGTGGTTTTCGCGGCATTCGAAGCGAACCGGTAGATAATCTGTGCA
TAGAAGGTGAGCAGGAAGATGATGATGAAGTCGTGGAAGAGGATGAGCGA
GGCCAACAGGTGATCGTTCAGCCGCATCTCGGCAAAGCGTCCACCATTGA
TCGTCTGGGCATGATACATCACGAACAAGAGCACAATAAGGCTTATGAAG
ATCTGGAATACCACAAAGGAGTACGGCATATCGATCAGAATGTGCATCAT
GACAAAGAATACGGTGATGATCAGGAAAATAAAGGCCATTACAAACAATA
TTACAACGTCCAATGTAAGATCGTGTGGTATAATGGATCCCAGCAGCACA
AACATAAAGACAAACAGCACACAGATGATAAACCACATTATCAAGTCCTG
CCAGAGAGTTCTTGCCACCAGAGCGAACATACCAATTATTATAAACTCCA
CTATAAGCACGGTGA

BS14233.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12209-PA 858 CG12209-RA 260..858 615..17 2920 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12209-RA 1268 CG12209-RA 406..1004 615..17 2950 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10246335..10246644 17..326 1535 99.7 Plus
2R 25286936 2R 10246703..10246852 326..475 735 99.3 Plus
2R 25286936 2R 10246904..10247029 476..601 615 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 17:37:57 has no hits.

BS14233.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:21 Download gff for BS14233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12209-PA 261..858 17..614 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:16 Download gff for BS14233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 407..1008 12..614 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:42 Download gff for BS14233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 407..1008 12..614 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:42 Download gff for BS14233.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10246331..10246643 12..325 98 <- Plus
2R 10246703..10246852 326..475 99 <- Plus
2R 10246904..10247029 476..601 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:16 Download gff for BS14233.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6133836..6134148 12..325 98 <- Plus
arm_2R 6134208..6134357 326..475 99 <- Plus
arm_2R 6134409..6134534 476..601 99 <- Plus

BS14233.5prime Sequence

654 bp (580 high quality bases) assembled on 2006-10-13

> BS14233.5prime
GAAGTTATCAGTCGACATGGAGGACCGCCGCCAGAGAATGCGGGCATATC
GGCGGGCCCGCCGGAAGTTTGCCTGCGTCGTCTACATGGTGACCATAGCC
TGGATGGTCCTGGCTATATTGCAATGGCTCCTGGTCAGCTTGATATCGGA
CATAAGTATGACCTTCACAAACTTTTACTGGATTAGCGTGATCTTCTTCG
CGCTGGCCATGGTGATGGTCACGGTGTTCATATTCTTCGAGAAGGTCCGA
TTCATCATTGGCCTCAACTGGCTAATCACCGTGCTTATAGTGGAGTTTAT
AATAATTGGTATGTTCGCTCTGGTGGCAAGAACTCTCTGGCAGGACTTGA
TAATGTGGTTTATCATCTGTGTGCTGTTTGTCTTTATGTTTGTGCTGCTG
GGATCCATTATACCACACGATCTTACATTGGACGTTGTAATATTGTTTGT
AATGGCCTTTATTTTCCTGATCATCACCGTATTCTTTGTCATGATGCACA
TTCTGATCGATATGCCGTACTCCTTTGTGGTATTCCAGATCTTCATAAGC
CTTATTGTGCTCTTGTTCGTGATGTATCATGCCCAGACGATCAATGGTGG
ACGCTTTGCCGAGATGCGGCTGAACGATCACCTGTTGGCCTCGCTCATCC
TCTT

BS14233.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12209-PA 858 CG12209-RA 1..638 17..654 3015 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12209-RA 1268 CG12209-RA 146..784 16..654 3090 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10246703..10246852 565..416 735 99.3 Minus
2R 25286936 2R 10247083..10247230 292..145 725 99.3 Minus
2R 25286936 2R 10246904..10247029 415..290 615 99.2 Minus
2R 25286936 2R 10247287..10247415 144..16 600 97.7 Minus
2R 25286936 2R 10246555..10246644 654..565 435 98.9 Minus
Blast to na_te.dros performed on 2015-02-12 03:48:00 has no hits.

BS14233.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:21 Download gff for BS14233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12209-PA 1..638 17..654 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:52 Download gff for BS14233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 140..784 9..654 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:55 Download gff for BS14233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 140..784 9..654 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:55 Download gff for BS14233.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10246555..10246643 566..654 98 <- Minus
2R 10246703..10246852 416..565 99 <- Minus
2R 10246904..10247029 290..415 99 <- Minus
2R 10247086..10247230 145..289 99 <- Minus
2R 10247287..10247421 9..144 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:52 Download gff for BS14233.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6134060..6134148 566..654 98 <- Minus
arm_2R 6134208..6134357 416..565 99 <- Minus
arm_2R 6134409..6134534 290..415 99 <- Minus
arm_2R 6134591..6134735 145..289 99 <- Minus
arm_2R 6134792..6134926 9..144 95   Minus

BS14233.complete Sequence

890 bp assembled on 2006-11-01

GenBank Submission: FJ637620

> BS14233.complete
GAAGTTATCAGTCGACATGGAGGACCGCCGCCAGAGAATGCGGGCATATC
GGCGGGCCCGCCGGAAGTTTGCCTGCGTCGTCTACATGGTGACCATAGCC
TGGATGGTCCTGGCTATATTGCAATGGCTCCTGGTCAGCTTGATATCGGA
CATAAGTATGACCTTCACAAACTTTTACTGGATTAGCGTGATCTTCTTCG
CGCTGGCCATGGTGATGGTCACGGTGTTCATATTCTTCGAGAAGGTCCGA
TTCATCATTGGCCTCAACTGGCTAATCACCGTGCTTATAGTGGAGTTTAT
AATAATTGGTATGTTCGCTCTGGTGGCAAGAACTCTCTGGCAGGACTTGA
TAATGTGGTTTATCATCTGTGTGCTGTTTGTCTTTATGTTTGTGCTGCTG
GGATCCATTATACCACACGATCTTACATTGGACGTTGTAATATTGTTTGT
AATGGCCTTTATTTTCCTGATCATCACCGTATTCTTTGTCATGATGCACA
TTCTGATCGATATGCCGTACTCCTTTGTGGTATTCCAGATCTTCATAAGC
CTTATTGTGCTCTTGTTCGTGATGTATCATGCCCAGACGATCAATGGTGG
ACGCTTTGCCGAGATGCGGCTGAACGATCACCTGTTGGCCTCGCTCATCC
TCTTCCACGACTTCATCATCATCTTCCTGCTCACCTTCTATGCACAGATT
ATCTACCGGTTCGCTTCGAATGCCGCGAAAACCACGGGATCTCCGTTAGA
GGGCAGTTGGGTTCAGACGACACCGATTAATGGGGATGACGTCGTGGAAG
ACAATGACGAGGACAGCGAGGATGGACCGTCGGCAGTGGGCAGTGAGAAT
TCCCCAGGTGGAAATGCATCATAAAAGCTTTCTAGACCAT

BS14233.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12209-RA 858 CG12209-PA 1..858 17..874 4185 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12209-RA 1268 CG12209-RA 146..1004 16..874 4190 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10246335..10246644 874..565 1535 99.7 Minus
2R 25286936 2R 10246703..10246852 565..416 735 99.3 Minus
2R 25286936 2R 10247083..10247230 292..145 725 99.3 Minus
2R 25286936 2R 10246904..10247029 415..290 615 99.2 Minus
2R 25286936 2R 10247287..10247415 144..16 600 97.7 Minus
Blast to na_te.dros performed on 2014-11-27 16:39:54 has no hits.

BS14233.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:38 Download gff for BS14233.complete
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 1..858 17..874 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:09 Download gff for BS14233.complete
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 52..920 9..879 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:27 Download gff for BS14233.complete
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 147..1002 17..872 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:38 Download gff for BS14233.complete
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 52..920 9..879 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:48 Download gff for BS14233.complete
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 147..1002 17..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:48 Download gff for BS14233.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10246337..10246643 566..872 99 <- Minus
2R 10246703..10246852 416..565 99 <- Minus
2R 10246904..10247029 290..415 99 <- Minus
2R 10247086..10247230 145..289 99 <- Minus
2R 10247287..10247414 17..144 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:27 Download gff for BS14233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6133842..6134148 566..872 99 <- Minus
arm_2R 6134208..6134357 416..565 99 <- Minus
arm_2R 6134409..6134534 290..415 99 <- Minus
arm_2R 6134591..6134735 145..289 99 <- Minus
arm_2R 6134792..6134919 17..144 97   Minus

BS14233.pep Sequence

Translation from 16 to 873

> BS14233.pep
MEDRRQRMRAYRRARRKFACVVYMVTIAWMVLAILQWLLVSLISDISMTF
TNFYWISVIFFALAMVMVTVFIFFEKVRFIIGLNWLITVLIVEFIIIGMF
ALVARTLWQDLIMWFIICVLFVFMFVLLGSIIPHDLTLDVVILFVMAFIF
LIITVFFVMMHILIDMPYSFVVFQIFISLIVLLFVMYHAQTINGGRFAEM
RLNDHLLASLILFHDFIIIFLLTFYAQIIYRFASNAAKTTGSPLEGSWVQ
TTPINGDDVVEDNDEDSEDGPSAVGSENSPGGNAS*

BS14233.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12209-PA 285 CG12209-PA 1..285 1..285 1450 100 Plus
CG42570-PB 609 CG42570-PB 8..285 9..285 620 44.8 Plus
CG42570-PA 610 CG42570-PA 8..301 9..281 620 43.9 Plus
CG34315-PB 266 CG34315-PB 1..224 1..224 536 42.4 Plus
CG42571-PB 292 CG42571-PB 8..266 15..266 414 34 Plus