Clone Sequence Records
BS14234.complete Sequence
905 bp assembled on 2010-02-09
GenBank Submission: KX801411
> BS14234.complete
GAAGTTATCAGTCGACATGTCCTCGCCCACAGATTTCGACCGTTCCATGC
TGGTGGAGTACAGTGCCGCATTTATGTACTACATTGAGAAGCACAAGCTG
ATGGAGGTGATGAGTCGTCTCCTGGCCGAGATTTCCGTGGCGGATGGAGT
GACAGATGTGCGAAGATGGATGGGCGAGAACATAACCAGGATCGGCGTAG
AGATATACACCAAATCGATGGACGCCTTTCATCGGGGAGTAAGGGGTGAT
TTCTACCAGCTGCCCAGGAGCTTCTACCACCGAATAGTGCTGCACGGCAA
GCCAGGATCTGGGCGAAGGTCCTTGGCATATGTGCTAGCCCAGCGCTGGA
ATCTGCTAATATTGGATGCCGATGTGCTGGCCTATCATAGCATCAACAAA
CAGGACCAGGATGAGCCGTCCAGATTGCTGCAGGAAGCCATTGAAAAGGA
TTGTGTCTACAAACGTTCGCAGGCAGTGGGCAATCTCATCGAGAACAGAC
TCCTCCAGGAGGACGCCCTTCACAGGGGTTGGATTCTGATCAATTACCCG
AACAATAAGTGCGAGGCTGAGGAACTCTTCGAGGGCTTCACTGTGCCACC
GAATCGATTCGTATTCCTACAAATCGACGAGCGTCTGGCTCGCATGAGAA
TCCTGCTCAATAGCTACTCGCCAGGACCTCAAGCTCACGTCAGTTTTGTG
GACCGCCAGATGGCCCAGTTCCGGAAAAGTGAACCTGCTCTAAGCTCCTA
CCTCAGCCAGCGGAGAGAAGTGGTCTATGTGGATGCGTCACCTTGTTTCG
AGCAGGTCAAGTGCGGGATCATCTCGGAGCTCACCAAAACTCCCTATGTG
CTGGGTAAAAAATACGGCGAGGCAAATGCCAAAATCTGAAAGCTTTCTAG
ACCAT
BS14234.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:20:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15543-RB | 873 | CG15543-PB | 1..873 | 17..889 | 4365 | 100 | Plus |
| CG15543-RA | 873 | CG15543-PA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:20:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15543-RB | 1595 | CG15543-RB | 61..938 | 13..890 | 4375 | 99.9 | Plus |
| CG15543-RA | 1036 | CG15543-RA | 61..938 | 13..890 | 4375 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30742940..30743817 | 13..890 | 4375 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:20:57 has no hits.
BS14234.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:11 Download gff for
BS14234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:17 Download gff for
BS14234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 44..915 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:22 Download gff for
BS14234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 65..936 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:32 Download gff for
BS14234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 44..915 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:18 Download gff for
BS14234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 65..936 | 17..888 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:18 Download gff for
BS14234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30742944..30743815 | 17..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:22 Download gff for
BS14234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26568666..26569537 | 17..888 | 100 | | Plus |
BS14234.3prime Sequence
465 bp (384 high quality bases) assembled on 2006-10-13
> BS14234.3prime
ATGGTCTAGAAAGCTTTCAGATTTTGGCATTTGCCTCGCCGTATTTTTTA
CCCAGCACATAGGGAGTTTTGGTGAGCTCCGAGATGATCCCGCACTTGAC
CTGCTCGAAACAAGGTGACGCATCCACATAGACCACTTCTCTCCGCTGGC
TGAGGTAGGAGCTTAGAGCAGGTTCACTTTTCCGGAACTGGGCCATCTGG
CGGTCCACAAAACTGACGTGAGCTTGAGGTCCTGGCGAGTAGCTATTGAG
CAGGATTCTCATGCGAGCCAGACGCTCGTCGATTTGTAGGAATACGAATC
GATTCGGTGGCACAGTGAAGCCCTCGAAGAGTTCCTCAGCCTCGCACTTA
TTGTTCGGGTAATTGATCAGAATCCAACCCCTGTGAAGGGCGTCCTCCTG
GAGGAGTCTGTTCTCGATGAGATTGCCCACTGCCTGCGAACGTTTGTAAA
CACAATCCTTTTCAA
BS14234.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15543-PA | 873 | CG15543-RA | 425..873 | 465..17 | 2220 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15543-RB | 1595 | CG15543-RB | 489..938 | 465..16 | 2235 | 99.8 | Minus |
| CG15543-RA | 1036 | CG15543-RA | 489..938 | 465..16 | 2235 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30743368..30743817 | 465..16 | 2235 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:45:07 has no hits.
BS14234.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:21 Download gff for
BS14234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-PA | 427..873 | 17..463 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:21:46 Download gff for
BS14234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 491..941 | 10..463 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:19:52 Download gff for
BS14234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 491..941 | 10..463 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:52 Download gff for
BS14234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30743370..30743820 | 10..463 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:21:46 Download gff for
BS14234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26569092..26569542 | 10..463 | 99 | | Minus |
BS14234.5prime Sequence
456 bp (414 high quality bases) assembled on 2006-10-13
> BS14234.5prime
GAAGTTATCAGTCGACATGTCCTCGCCCACAGATTTCGACCGTTCCATGC
TGGTGGAGTACAGTGCCGCATTTATGTACTACATTGAGAAGCACAAGCTG
ATGGAGGTGATGAGTCGTCTCCTGGCCGAGATTTCCGTGGCGGATGGAGT
GACAGATGTGCGAAGATGGATGGGCGAGAACATAACCAGGATCGGCGTAG
AGATATACACCAAATCGATGGACGCCTTTCATCGGGGAGTAAGGGGTGAT
TTCTACCAGCTGCCCAGGAGCTTCTACCACCGAATAGTGCTGCACGGCAA
GCCAGGATCTGGGCGAAGGTCCTTGGCATATGTGCTAGCCCAGCGCTGGA
ATCTGCTAATATTGGATGCCGATGTGCTGGCCTATCATAGCATCAACAAA
CAGGACCAGGATGAACCGTCCAGATTGCTGCAGGAAGCCATTGAAAAAGA
TTGTGT
BS14234.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:53:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15543-PA | 873 | CG15543-RA | 1..440 | 17..456 | 2150 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15543-RB | 1595 | CG15543-RB | 61..504 | 13..456 | 2175 | 99.3 | Plus |
| CG15543-RA | 1036 | CG15543-RA | 61..504 | 13..456 | 2175 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:07:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30742940..30743383 | 13..456 | 2175 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:08:02 has no hits.
BS14234.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:21 Download gff for
BS14234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-PA | 1..440 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:56:23 Download gff for
BS14234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 54..504 | 2..456 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:51 Download gff for
BS14234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 54..504 | 2..456 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:51 Download gff for
BS14234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30742933..30743383 | 2..456 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:56:23 Download gff for
BS14234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26568655..26569105 | 2..456 | 98 | | Plus |
BS14234.pep Sequence
Translation from 16 to 888
> BS14234.pep
MSSPTDFDRSMLVEYSAAFMYYIEKHKLMEVMSRLLAEISVADGVTDVRR
WMGENITRIGVEIYTKSMDAFHRGVRGDFYQLPRSFYHRIVLHGKPGSGR
RSLAYVLAQRWNLLILDADVLAYHSINKQDQDEPSRLLQEAIEKDCVYKR
SQAVGNLIENRLLQEDALHRGWILINYPNNKCEAEELFEGFTVPPNRFVF
LQIDERLARMRILLNSYSPGPQAHVSFVDRQMAQFRKSEPALSSYLSQRR
EVVYVDASPCFEQVKCGIISELTKTPYVLGKKYGEANAKI*
BS14234.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15543-PB | 290 | CG15543-PB | 1..290 | 1..290 | 1504 | 100 | Plus |
| CG15543-PA | 290 | CG15543-PA | 1..290 | 1..290 | 1504 | 100 | Plus |
