Clone Sequence Records
BS14235.3prime Sequence
549 bp (470 high quality bases) assembled on 2006-10-13
> BS14235.3prime
ATGGTCTAGAAAGCTTTCACATAATGGTCTCCTCCTCCAGCATGTACTCC
GTGAGATCGGCTTCGCCCGACAGCATGGTCACCGGCACCCGGTTCATCTG
GGCCACCCGTTGACTGGGCCAGACCATCACATCGCAACAGTTGGTCAACA
CGACCACATTGGTGCTCGGCGTGTTGGTGCACATCAGGTTGCCGGCCTTC
TCCTGGTCGCACTTGTTGAACTTGCGCCGGAAACGGAACTTCACGGGCAA
CGAGTTGCCCATCACGCTCTCTTCATCGAAGTACGGCGGCAGGGATTTGT
TGAAAGCCGGATTTGTGATGGCCGGCTTGGTTAGCTCTTCGAGAACCACG
GAGGTCTTGAGTCGGCGACAGGGATCACAGTAGTCGGAGGCCAATGTGTT
CTCCGGTGTCTTGGTAGCACATGGATCCGGCTTGGGTTCGGGCACATTGG
ATCCCAAACCACTACCATGTGGCCCACTGTCACTGTCACGTTTACCCTTC
GGATTCATGGGATCCTGGCCGCGTAATACGCACTCCTGCAGGAACTCCT
BS14235.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4286-PA | 660 | CG4286-RA | 130..660 | 547..17 | 2580 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4286-RA | 821 | CG4286-RA | 229..759 | 547..17 | 2610 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21177816..21178135 | 17..336 | 1585 | 99.7 | Plus |
| 2R | 25286936 | 2R | 21178196..21178408 | 335..547 | 1035 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:28:39 has no hits.
BS14235.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:22 Download gff for
BS14235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4286-PA | 128..660 | 17..549 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:51 Download gff for
BS14235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4286-RA | 227..759 | 17..549 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:12 Download gff for
BS14235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4286-RA | 227..759 | 17..549 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:12 Download gff for
BS14235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21177816..21178133 | 17..334 | 99 | <- | Plus |
| 2R | 21178196..21178409 | 335..549 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:51 Download gff for
BS14235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17065321..17065638 | 17..334 | 99 | <- | Plus |
| arm_2R | 17065701..17065914 | 335..549 | 98 | | Plus |
BS14235.5prime Sequence
539 bp (469 high quality bases) assembled on 2006-10-13
> BS14235.5prime
GAAGTTATCAGTCGACATGGCGCACCGCCTCCAGCTCCGTAGCGATGACT
TCGACGTTATCGGCGCCGTGCCCCGCAATCTGTCCGTGATCAAGAACTTC
CTGAAGCGGGACTGTGCCATCAAGAAACTGATCGACATCGAGGAGGAGTT
CCTGCAGGAGTGCGTATTACGCGGCCAGGATCCCATGAATCCGAAGGGTA
AACGTGACAGTGACAGTGGGCCACATGGTAGTGGTTTGGGATCCAATGTG
CCCGAACCCAAGCCGGATCCATGTGCTACCAAGACACCGGAGAACACATT
GGCCTCCGACTACTGTGATCCCTGTCGCCGACTCAAGACCTCCGTGGTTC
TCGAAGAGCTAACCAAGCCGGCCATCACAAATCCGGCTTTCAACAAATCC
CTGCCGCCGTACTTCGATGAAGAGAGCGTGATGGGCAACTCGTTGCCCGT
GAAGTTCCGTTTCCGGCGCAAGTTCAACAAGTGCGACCAGGAGAAGGCCG
GCAACCTGATGTGCACCAACACGCCGAGCACCAATGTGG
BS14235.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4286-PA | 660 | CG4286-RA | 1..523 | 17..539 | 2540 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4286-RA | 821 | CG4286-RA | 99..622 | 16..539 | 2575 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21178196..21178538 | 358..16 | 1670 | 99.1 | Minus |
| 2R | 25286936 | 2R | 21177953..21178135 | 539..357 | 915 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:59:56 has no hits.
BS14235.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:22 Download gff for
BS14235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4286-PA | 1..523 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:10 Download gff for
BS14235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4286-RA | 96..622 | 10..539 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:29 Download gff for
BS14235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4286-RA | 96..622 | 10..539 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:29 Download gff for
BS14235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21177953..21178133 | 359..539 | 100 | <- | Minus |
| 2R | 21178196..21178541 | 10..358 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:10 Download gff for
BS14235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17065458..17065638 | 359..539 | 100 | <- | Minus |
| arm_2R | 17065701..17066046 | 10..358 | 98 | | Minus |
BS14235.complete Sequence
692 bp assembled on 2006-11-01
GenBank Submission: FJ637621
> BS14235.complete
GAAGTTATCAGTCGACATGGCGCACCGCCTCCAGCTCCGTAGCGATGACT
TCGACGTTATCGGCGCCGTGCCCCGCAATCTGTCCGTGATCAAGAACTTC
CTGAAGCGGGACTGTGCCATCAAGAAACTGATCGACATCGAGGAGGAGTT
CCTGCAGGAGTGCGTATTACGCGGCCAGGATCCCATGAATCCGAAGGGTA
AACGTGACAGTGACAGTGGGCCACATGGTAGTGGTTTGGGATCCAATGTG
CCCGAACCCAAGCCGGATCCATGTGCTACCAAGACACCGGAGAACACATT
GGCCTCCGACTACTGTGATCCCTGTCGCCGACTCAAGACCTCCGTGGTTC
TCGAAGAGCTAACCAAGCCGGCCATCACAAATCCGGCTTTCAACAAATCC
CTGCCGCCGTACTTCGATGAAGAGAGCGTGATGGGCAACTCGTTGCCCGT
GAAGTTCCGTTTCCGGCGCAAGTTCAACAAGTGCGACCAGGAGAAGGCCG
GCAACCTGATGTGCACCAACACGCCGAGCACCAATGTGGTCGTGTTGACC
AACTGTTGCGATGTGATGGTCTGGCCCAGTCAACGGGTGGCCCAGATGAA
CCGGGTGCCGGTGACCATGCTGTCGGGCGAAGCCGATCTCACGGAGTACA
TGCTGGAGGAGGAGACCATTATGTGAAAGCTTTCTAGACCAT
BS14235.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4286-RA | 660 | CG4286-PA | 1..660 | 17..676 | 3240 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4286-RA | 821 | CG4286-RA | 99..759 | 16..676 | 3245 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21178196..21178538 | 358..16 | 1670 | 99.1 | Minus |
| 2R | 25286936 | 2R | 21177816..21178135 | 676..357 | 1585 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:46:18 has no hits.
BS14235.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:25 Download gff for
BS14235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4286-RA | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:46 Download gff for
BS14235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4286-RA | 96..759 | 10..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:29 Download gff for
BS14235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4286-RA | 100..758 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:26 Download gff for
BS14235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4286-RA | 96..759 | 10..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:50 Download gff for
BS14235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4286-RA | 100..758 | 17..675 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:50 Download gff for
BS14235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21177817..21178133 | 359..675 | 99 | <- | Minus |
| 2R | 21178196..21178537 | 17..358 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:29 Download gff for
BS14235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17065322..17065638 | 359..675 | 99 | <- | Minus |
| arm_2R | 17065701..17066042 | 17..358 | 99 | | Minus |
BS14235.pep Sequence
Translation from 16 to 675
> BS14235.pep
MAHRLQLRSDDFDVIGAVPRNLSVIKNFLKRDCAIKKLIDIEEEFLQECV
LRGQDPMNPKGKRDSDSGPHGSGLGSNVPEPKPDPCATKTPENTLASDYC
DPCRRLKTSVVLEELTKPAITNPAFNKSLPPYFDEESVMGNSLPVKFRFR
RKFNKCDQEKAGNLMCTNTPSTNVVVLTNCCDVMVWPSQRVAQMNRVPVT
MLSGEADLTEYMLEEETIM*
BS14235.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4286-PA | 219 | CG4286-PA | 1..219 | 1..219 | 1165 | 100 | Plus |
| CG30278-PC | 275 | CG30278-PC | 96..221 | 92..217 | 172 | 33.1 | Plus |
| CG30278-PB | 275 | CG30278-PB | 96..221 | 92..217 | 172 | 33.1 | Plus |
| CG30278-PA | 275 | CG30278-PA | 96..221 | 92..217 | 172 | 33.1 | Plus |
