Clone Sequence Records
BS14236.complete Sequence
563 bp assembled on 2010-02-09
GenBank Submission: KX800401
> BS14236.complete
GAAGTTATCAGTCGACATGGAGGAGTATTCGCGGGAACCGTGTCCCCATC
GCATCGTCGACGACTGCGGAGGAGCCTTTATCATGGGCTGCGTTGGAGGC
GGGCTCTTTCAGGGACTGAAGGGATTCCGGAACGCACCACAGGGACTAGG
ACGCAGGGTCGCCGGCAGTGTGGCTGCCATCAAGACCAAATCTCCGGTGA
TAGGTGGAAGTTTCGCCGCCTGGGGTGCAGTGTTCAGCATTGTGGACTGC
AGTCTGGTCCACTTTCGCCAAAAGGAGGATCCCTGGAACTCGATAGTGAG
CGGAGCAGTTACTGGTGGAATTCTGGCCTCACGCAATGGAGCGGCGGCCA
TGGCTGGAAGTGCAATTATCGGTGGCGTACTGCTCTCAATGATCGAGGGC
TTAGGCATATTTTTTACACGTTTCGCGGCGGAACAGTTCCGAAATCGTGA
ACCGCATATCATGCCTGATGCCAATGAAGGATACGGTGACTTCAACTCTT
CCGGATTTGGATTTCCGGGTGCTCAGCAGGCCACTGCAACTAGCTAAAAG
CTTTCTAGACCAT
BS14236.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim17b2-RC | 531 | CG15257-PC | 1..531 | 17..547 | 2625 | 99.6 | Plus |
Tim17b2-RA | 531 | CG15257-PA | 1..531 | 17..547 | 2625 | 99.6 | Plus |
CG1724-RA | 558 | CG1724-PA | 1..392 | 17..408 | 640 | 77.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:24:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim17b2-RC | 817 | CG15257-RC | 109..640 | 17..548 | 2630 | 99.6 | Plus |
Tim17b2-RA | 761 | CG15257-RA | 109..640 | 17..548 | 2630 | 99.6 | Plus |
CG1724-RA | 843 | CG1724-RA | 125..521 | 12..408 | 650 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15484837..15485368 | 17..548 | 2630 | 99.6 | Plus |
X | 23542271 | X | 21202821..21203217 | 408..12 | 650 | 77.6 | Minus |
3R | 32079331 | 3R | 12364287..12364372 | 318..233 | 190 | 81.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:24:36 has no hits.
BS14236.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:12 Download gff for
BS14236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b2-RA | 1..531 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:04 Download gff for
BS14236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b2-RA | 70..598 | 17..545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:44 Download gff for
BS14236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b2-RA | 109..637 | 17..545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:33 Download gff for
BS14236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b2-RA | 70..598 | 17..545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:04 Download gff for
BS14236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b2-RA | 109..637 | 17..545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:04 Download gff for
BS14236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15484837..15485365 | 17..545 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:44 Download gff for
BS14236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15484837..15485365 | 17..545 | 99 | | Plus |
BS14236.3prime Sequence
531 bp (469 high quality bases) assembled on 2006-10-13
> BS14236.3prime
ATGGTCTAGAAAGCTTTTAGCTAGTTGCAGTGGCCTGCTGAGCACCCGGA
AATCCAAATCCGGAAGAGTTGAAGTCACCGTATCCTTCATTGGCATCAGG
CATGATATGCGGTTCACGATTTCGGAACTGTTCCGCCGCGAAACGTGTAA
AAAATATGCCTAAGCCCTCGATCATTGAGAGCAGTACGCCACCGATAATT
GCACTTCCAGCCATGGCCGCCGCTCCATTGCGTGAGGCCAGAATTCCACC
AGTAACTGCTCCGCTCACTATCGAGTTCCAGGGATCCTCCTTTTGGCGAA
AGTGGACCAGACTGCAGTCCACAATGCTGAACACTGCACCCCAGGCGGCG
AAACTTCCACCTATCACCGGAGATTTGGTCTTGATGGCAGCCACACTGCC
GGCGACCCTGCGTCCTAGTCCCTGTGGTGCGTTCCGGAATCCCTTCAGTC
CCTGAAAGAGCCCGCCTCCAACGCAGCCCATGATAAAGGCTCCTCCGCAG
TCGTCGACGATGCGATGGGGACCGGGTTCCC
BS14236.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:53:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15257-PA | 531 | Tim17b2-RA | 26..531 | 522..17 | 2480 | 99.6 | Minus |
CG15257-PB | 1437 | Tim17b2-RB | 26..503 | 522..45 | 2340 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim17b2-RC | 817 | CG15257-RC | 125..640 | 531..16 | 2520 | 99.2 | Minus |
Tim17b2-RA | 761 | CG15257-RA | 125..640 | 531..16 | 2520 | 99.2 | Minus |
CG1724-RA | 843 | CG1724-RA | 162..521 | 515..156 | 555 | 77.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15484853..15485368 | 531..16 | 2520 | 99.2 | Minus |
X | 23542271 | X | 21202821..21203180 | 156..515 | 540 | 76.7 | Plus |
3R | 32079331 | 3R | 12364287..12364372 | 246..331 | 190 | 81.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:45:20 has no hits.
BS14236.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:23 Download gff for
BS14236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15257-PA | 17..531 | 17..531 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:52:12 Download gff for
BS14236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b2-RA | 125..640 | 16..531 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:25:47 Download gff for
BS14236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b2-RA | 125..640 | 16..531 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:25:47 Download gff for
BS14236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15484853..15485368 | 16..531 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:52:12 Download gff for
BS14236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15484853..15485368 | 16..531 | 99 | | Minus |
BS14236.5prime Sequence
520 bp (471 high quality bases) assembled on 2006-10-13
> BS14236.5prime
GAAGTTATCAGTCGACATGGAGGAGTATTCGCGGGAACCGTGTCCCCATC
GCATCGTCGACGACTGCGGAGGAGCCTTTATCATGGGCTGCGTTGGAGGC
GGGCTCTTTCAGGGACTGAAGGGATTCCGGAACGCACCACAGGGACTAGG
ACGCAGGGTCGCCGGCAGTGTGGCTGCCATCAAGACCAAATCTCCGGTGA
TAGGTGGAAGTTTCGCCGCCTGGGGTGCAGTGTTCAGCATTGTGGACTGC
AGTCTGGTCCACTTTCGCCAAAAGGAGGATCCCTGGAACTCGATAGTGAG
CGGAGCAGTTACTGGTGGAATTCTGGCCTCACGCAATGGAGCGGCGGCCA
TGGCTGGAAGTGCAATTATCGGTGGCGTACTGCTCTCAATGATCGAGGGC
TTAGGCATATTTTTTACACGTTTCGCGGCGGAACAGTTCCGAAATCGTGA
ACCGCATATCATGCCTGATGCCAATGAAGGATACGGTGACTTCAACTCTT
CCGGAATTGGATTTCCGGGT
BS14236.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:53:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15257-PA | 531 | Tim17b2-RA | 1..504 | 17..520 | 2445 | 99.4 | Plus |
CG15257-PB | 1437 | Tim17b2-RB | 1..503 | 17..519 | 2440 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim17b2-RC | 817 | CG15257-RC | 109..612 | 17..520 | 2475 | 99.4 | Plus |
Tim17b2-RA | 761 | CG15257-RA | 109..612 | 17..520 | 2475 | 99.4 | Plus |
CG1724-RA | 843 | CG1724-RA | 125..521 | 12..408 | 665 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15484837..15485340 | 17..520 | 2475 | 99.4 | Plus |
X | 23542271 | X | 21202821..21203217 | 408..12 | 650 | 77.6 | Minus |
3R | 32079331 | 3R | 12364287..12364372 | 318..233 | 190 | 81.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:17:46 has no hits.
BS14236.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:23 Download gff for
BS14236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15257-PA | 1..504 | 17..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:10:44 Download gff for
BS14236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b2-RA | 100..612 | 10..520 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:21:27 Download gff for
BS14236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b2-RA | 100..612 | 10..520 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:21:27 Download gff for
BS14236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15484828..15485340 | 10..520 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:10:44 Download gff for
BS14236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15484828..15485340 | 10..520 | 98 | | Plus |
BS14236.pep Sequence
Translation from 16 to 546
> BS14236.pep
MEEYSREPCPHRIVDDCGGAFIMGCVGGGLFQGLKGFRNAPQGLGRRVAG
SVAAIKTKSPVIGGSFAAWGAVFSIVDCSLVHFRQKEDPWNSIVSGAVTG
GILASRNGAAAMAGSAIIGGVLLSMIEGLGIFFTRFAAEQFRNREPHIMP
DANEGYGDFNSSGFGFPGAQQATATS*
BS14236.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:57:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim17b2-PC | 176 | CG15257-PC | 1..176 | 1..176 | 924 | 100 | Plus |
Tim17b2-PA | 176 | CG15257-PA | 1..176 | 1..176 | 924 | 100 | Plus |
CG1724-PA | 185 | CG1724-PA | 1..185 | 1..176 | 686 | 73 | Plus |
Tim17b-PB | 173 | CG40451-PB | 1..146 | 1..146 | 613 | 74 | Plus |
Tim17b-PA | 173 | CG40451-PA | 1..146 | 1..146 | 613 | 74 | Plus |