Clone BS14236 Report

Search the DGRC for BS14236

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptTim17b2-RA
Protein status:BS14236.pep: full length peptide match
Sequenced Size:563

Clone Sequence Records

BS14236.complete Sequence

563 bp assembled on 2010-02-09

GenBank Submission: KX800401

> BS14236.complete
GAAGTTATCAGTCGACATGGAGGAGTATTCGCGGGAACCGTGTCCCCATC
GCATCGTCGACGACTGCGGAGGAGCCTTTATCATGGGCTGCGTTGGAGGC
GGGCTCTTTCAGGGACTGAAGGGATTCCGGAACGCACCACAGGGACTAGG
ACGCAGGGTCGCCGGCAGTGTGGCTGCCATCAAGACCAAATCTCCGGTGA
TAGGTGGAAGTTTCGCCGCCTGGGGTGCAGTGTTCAGCATTGTGGACTGC
AGTCTGGTCCACTTTCGCCAAAAGGAGGATCCCTGGAACTCGATAGTGAG
CGGAGCAGTTACTGGTGGAATTCTGGCCTCACGCAATGGAGCGGCGGCCA
TGGCTGGAAGTGCAATTATCGGTGGCGTACTGCTCTCAATGATCGAGGGC
TTAGGCATATTTTTTACACGTTTCGCGGCGGAACAGTTCCGAAATCGTGA
ACCGCATATCATGCCTGATGCCAATGAAGGATACGGTGACTTCAACTCTT
CCGGATTTGGATTTCCGGGTGCTCAGCAGGCCACTGCAACTAGCTAAAAG
CTTTCTAGACCAT

BS14236.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b2-RC 531 CG15257-PC 1..531 17..547 2625 99.6 Plus
Tim17b2-RA 531 CG15257-PA 1..531 17..547 2625 99.6 Plus
CG1724-RA 558 CG1724-PA 1..392 17..408 640 77.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b2-RC 817 CG15257-RC 109..640 17..548 2630 99.6 Plus
Tim17b2-RA 761 CG15257-RA 109..640 17..548 2630 99.6 Plus
CG1724-RA 843 CG1724-RA 125..521 12..408 650 77.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15484837..15485368 17..548 2630 99.6 Plus
X 23542271 X 21202821..21203217 408..12 650 77.6 Minus
3R 32079331 3R 12364287..12364372 318..233 190 81.4 Minus
Blast to na_te.dros performed on 2014-11-28 04:24:36 has no hits.

BS14236.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:12 Download gff for BS14236.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 1..531 17..547 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:04 Download gff for BS14236.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 70..598 17..545 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:44 Download gff for BS14236.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 109..637 17..545 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:33 Download gff for BS14236.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 70..598 17..545 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:04 Download gff for BS14236.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 109..637 17..545 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:04 Download gff for BS14236.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15484837..15485365 17..545 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:44 Download gff for BS14236.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15484837..15485365 17..545 99   Plus

BS14236.3prime Sequence

531 bp (469 high quality bases) assembled on 2006-10-13

> BS14236.3prime
ATGGTCTAGAAAGCTTTTAGCTAGTTGCAGTGGCCTGCTGAGCACCCGGA
AATCCAAATCCGGAAGAGTTGAAGTCACCGTATCCTTCATTGGCATCAGG
CATGATATGCGGTTCACGATTTCGGAACTGTTCCGCCGCGAAACGTGTAA
AAAATATGCCTAAGCCCTCGATCATTGAGAGCAGTACGCCACCGATAATT
GCACTTCCAGCCATGGCCGCCGCTCCATTGCGTGAGGCCAGAATTCCACC
AGTAACTGCTCCGCTCACTATCGAGTTCCAGGGATCCTCCTTTTGGCGAA
AGTGGACCAGACTGCAGTCCACAATGCTGAACACTGCACCCCAGGCGGCG
AAACTTCCACCTATCACCGGAGATTTGGTCTTGATGGCAGCCACACTGCC
GGCGACCCTGCGTCCTAGTCCCTGTGGTGCGTTCCGGAATCCCTTCAGTC
CCTGAAAGAGCCCGCCTCCAACGCAGCCCATGATAAAGGCTCCTCCGCAG
TCGTCGACGATGCGATGGGGACCGGGTTCCC

BS14236.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG15257-PA 531 Tim17b2-RA 26..531 522..17 2480 99.6 Minus
CG15257-PB 1437 Tim17b2-RB 26..503 522..45 2340 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b2-RC 817 CG15257-RC 125..640 531..16 2520 99.2 Minus
Tim17b2-RA 761 CG15257-RA 125..640 531..16 2520 99.2 Minus
CG1724-RA 843 CG1724-RA 162..521 515..156 555 77.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15484853..15485368 531..16 2520 99.2 Minus
X 23542271 X 21202821..21203180 156..515 540 76.7 Plus
3R 32079331 3R 12364287..12364372 246..331 190 81.4 Plus
Blast to na_te.dros performed on 2015-02-13 15:45:20 has no hits.

BS14236.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:23 Download gff for BS14236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15257-PA 17..531 17..531 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:52:12 Download gff for BS14236.3prime
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 125..640 16..531 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:25:47 Download gff for BS14236.3prime
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 125..640 16..531 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:25:47 Download gff for BS14236.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15484853..15485368 16..531 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:52:12 Download gff for BS14236.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15484853..15485368 16..531 99   Minus

BS14236.5prime Sequence

520 bp (471 high quality bases) assembled on 2006-10-13

> BS14236.5prime
GAAGTTATCAGTCGACATGGAGGAGTATTCGCGGGAACCGTGTCCCCATC
GCATCGTCGACGACTGCGGAGGAGCCTTTATCATGGGCTGCGTTGGAGGC
GGGCTCTTTCAGGGACTGAAGGGATTCCGGAACGCACCACAGGGACTAGG
ACGCAGGGTCGCCGGCAGTGTGGCTGCCATCAAGACCAAATCTCCGGTGA
TAGGTGGAAGTTTCGCCGCCTGGGGTGCAGTGTTCAGCATTGTGGACTGC
AGTCTGGTCCACTTTCGCCAAAAGGAGGATCCCTGGAACTCGATAGTGAG
CGGAGCAGTTACTGGTGGAATTCTGGCCTCACGCAATGGAGCGGCGGCCA
TGGCTGGAAGTGCAATTATCGGTGGCGTACTGCTCTCAATGATCGAGGGC
TTAGGCATATTTTTTACACGTTTCGCGGCGGAACAGTTCCGAAATCGTGA
ACCGCATATCATGCCTGATGCCAATGAAGGATACGGTGACTTCAACTCTT
CCGGAATTGGATTTCCGGGT

BS14236.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15257-PA 531 Tim17b2-RA 1..504 17..520 2445 99.4 Plus
CG15257-PB 1437 Tim17b2-RB 1..503 17..519 2440 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b2-RC 817 CG15257-RC 109..612 17..520 2475 99.4 Plus
Tim17b2-RA 761 CG15257-RA 109..612 17..520 2475 99.4 Plus
CG1724-RA 843 CG1724-RA 125..521 12..408 665 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15484837..15485340 17..520 2475 99.4 Plus
X 23542271 X 21202821..21203217 408..12 650 77.6 Minus
3R 32079331 3R 12364287..12364372 318..233 190 81.4 Minus
Blast to na_te.dros performed on 2015-02-13 01:17:46 has no hits.

BS14236.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:23 Download gff for BS14236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15257-PA 1..504 17..520 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:10:44 Download gff for BS14236.5prime
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 100..612 10..520 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:21:27 Download gff for BS14236.5prime
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 100..612 10..520 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:21:27 Download gff for BS14236.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15484828..15485340 10..520 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:10:44 Download gff for BS14236.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15484828..15485340 10..520 98   Plus

BS14236.pep Sequence

Translation from 16 to 546

> BS14236.pep
MEEYSREPCPHRIVDDCGGAFIMGCVGGGLFQGLKGFRNAPQGLGRRVAG
SVAAIKTKSPVIGGSFAAWGAVFSIVDCSLVHFRQKEDPWNSIVSGAVTG
GILASRNGAAAMAGSAIIGGVLLSMIEGLGIFFTRFAAEQFRNREPHIMP
DANEGYGDFNSSGFGFPGAQQATATS*

BS14236.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b2-PC 176 CG15257-PC 1..176 1..176 924 100 Plus
Tim17b2-PA 176 CG15257-PA 1..176 1..176 924 100 Plus
CG1724-PA 185 CG1724-PA 1..185 1..176 686 73 Plus
Tim17b-PB 173 CG40451-PB 1..146 1..146 613 74 Plus
Tim17b-PA 173 CG40451-PA 1..146 1..146 613 74 Plus