Clone BS14239 Report

Search the DGRC for BS14239

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG14508-RA
Protein status:BS14239.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14239.3prime Sequence

696 bp (668 high quality bases) assembled on 2006-10-13

> BS14239.3prime
ATGGTCTAGAAAGCTTTTAGTCCTTCTTCTCGTTCTGGTTCTCGCACTTG
TTGCACTCCTGCTCCTTGGCCTTGCGCGCTGCTTTGGCGGCCTCCTCCGC
CTCTCTTTTGGCCTGGGCCTCCAGTTCGGGAATGAAGAAGATCTTGCGAG
ACTTGAGCGTTGACCACTTAAAACGCTTGATGTAGTAGGAAATGCCAATC
AAAAAGGTCGAAATCAGAGTAACTTTGATGAGCAGCAGGCGACGTTCGTC
GGTCTCCGGTTCTGAAGTCCACTTGAGGAAGACGCACACATCCTTGGCAA
TTTGGGCGGCCGAAGCAGGCACATTTGGATCTTCAAAGGAGACCACCTCA
TTGTCAACTACCTTGCCCATGGCAATCGCTCCGCCCGAGAAGTACGGATT
GAAGTACAGTCCATCACGAAGGGCAAACCCAGCCGGAGGATCACAGTATC
CGGTGAGCAGGGAGAACACGTAATCCTCGCCGCCCTTGCGAGCCGACACA
ATATAGCTGAGATCCGGCGGATAGGAGCCATTGTTGGCGGAACGGGCCGC
CTCCTCGTTGGCGTACGGAGAGGGGAAGTGATCGGACAGCTTGCCGGGAC
GCTCGTAGTACTCGCCCTCCTCGTTGGGCCCATCCCGCACCGTGATGGCC
TCCGCCTCGGCCTTGGCCTCCGCCTCCGTCATGCACACTCCCACCA

BS14239.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14508-PA 1035 CG14508-RA 356..1035 696..17 3375 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14508-RA 1293 CG14508-RA 573..1252 696..17 3385 99.9 Minus
CG4769-RB 1145 CG4769-RB 571..805 601..367 500 80.9 Minus
CG4769-RA 1521 CG4769-RA 571..805 601..367 500 80.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29202701..29203380 17..696 3385 99.9 Plus
3L 28110227 3L 5361734..5361968 601..367 500 80.9 Minus
Blast to na_te.dros performed on 2015-02-11 09:06:03 has no hits.

BS14239.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:24 Download gff for BS14239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14508-PA 357..1035 17..695 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:41 Download gff for BS14239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 574..1256 10..695 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:49:51 Download gff for BS14239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 574..1256 10..695 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:51 Download gff for BS14239.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29202697..29203379 10..695 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:41 Download gff for BS14239.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25028419..25029101 10..695 99   Plus

BS14239.5prime Sequence

708 bp (681 high quality bases) assembled on 2006-10-13

> BS14239.5prime
GAAGTTATCAGTCGACATGGCCAACAAATTCAGGAGTCTGAACAGCAAAC
TTTTCCAGCTGGCCATGAGCGGCATCCAGCGGACATCGGTGCGTCCGCGG
ATAAGTTTTCCGGGTCGTGGAAGCGGCTTTACTGGAAATCGCAAGCTGCT
GGGAGCCCTGGGAGCCCTAACCGGAACAGCAGGGCTGCTGATCTACGCCC
TGGAAACCAGCGTGGATGCCTCCTCGGACTGCGTGCATCCGGCCCACCAG
CACTGGAATCACAAAGGGCTTTTGTCCGCATTGGACAAGGAGAGCGTGCG
TCGAGGTTACACCGTTTACAAGGAGGTCTGCTCCTCCTGCCACTCATTGC
AGTACATGGCCTATCGCAACCTGGTGGGAGTGTGCATGACGGAGGCGGAG
GCCAAGGCCGAGGCGGAGGCCATCACGGTGCGGGATGGGCCCAACGAGGA
GGGCGAGTACTACGAGCGTCCCGGCAAGCTGTCCGATCACTTCCCCTCTC
CGTACGCCAACGAGGAGGCGGCCCGTTCCGCCAACAATGGCTCCTATCCG
CCGGATCTCAGCTATATTGTGTCGGCTCGCAAGGGCGGCGAGGATTACGT
GTTCTCCCTGCTCACCGGATACTGTGATCCTCCGGCTGGGTTTGCCCTTC
GTGATGGACTGTACTTCAATCCGTACTTCTCGGGCGGAGCGATTGCCATG
GGCAAGGT

BS14239.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14508-PA 1035 CG14508-RA 1..692 17..708 3410 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14508-RA 1293 CG14508-RA 218..909 17..708 3430 99.7 Plus
CG4769-RB 1145 CG4769-RB 357..805 253..701 655 76.4 Plus
CG4769-RA 1521 CG4769-RA 357..805 253..701 655 76.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29203044..29203735 708..17 3430 99.7 Minus
3L 28110227 3L 5361734..5361968 467..701 500 80.9 Plus
Blast to na_te.dros performed on 2015-02-10 16:30:00 has no hits.

BS14239.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:25 Download gff for BS14239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14508-PA 1..692 17..708 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:05 Download gff for BS14239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 218..909 17..708 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:24 Download gff for BS14239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 218..909 17..708 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:24 Download gff for BS14239.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29203044..29203735 17..708 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:05 Download gff for BS14239.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25028766..25029457 17..708 99   Minus

BS14239.complete Sequence

1067 bp assembled on 2006-11-01

GenBank Submission: FJ638859

> BS14239.complete
GAAGTTATCAGTCGACATGGCCAACAAATTCAGGAGTCTGAACAGCAAAC
TTTTCCAGCTGGCCATGAGCGGCATCCAGCGGACATCGGTGCGTCCGCGG
ATAAGTTTTCCGGGTCGTGGAAGCGGCTTTACTGGAAATCGCAAGCTGCT
GGGAGCCCTGGGAGCCCTAACCGGAACAGCAGGGCTGCTGATCTACGCCC
TGGAAACCAGCGTGGATGCCTCCTCGGACTGCGTGCATCCGGCCCACCAG
CACTGGAATCACAAAGGGCTTTTGTCCGCATTGGACAAGGAGAGCGTGCG
TCGAGGTTACACCGTTTACAAGGAGGTCTGCTCCTCCTGCCACTCATTGC
AGTACATGGCCTATCGCAACCTGGTGGGAGTGTGCATGACGGAGGCGGAG
GCCAAGGCCGAGGCGGAGGCCATCACGGTGCGGGATGGGCCCAACGAGGA
GGGCGAGTACTACGAGCGTCCCGGCAAGCTGTCCGATCACTTCCCCTCTC
CGTACGCCAACGAGGAGGCGGCCCGTTCCGCCAACAATGGCTCCTATCCG
CCGGATCTCAGCTATATTGTGTCGGCTCGCAAGGGCGGCGAGGATTACGT
GTTCTCCCTGCTCACCGGATACTGTGATCCTCCGGCTGGGTTTGCCCTTC
GTGATGGACTGTACTTCAATCCGTACTTCTCGGGCGGAGCGATTGCCATG
GGCAAGGTAGTTGACAATGAGGTGGTCTCCTTTGAAGATCCAAATGTGCC
TGCTTCGGCCGCCCAAATTGCCAAGGATGTGTGCGTCTTCCTCAAGTGGA
CTTCAGAACCGGAGACCGACGAACGTCGCCTGCTGCTCATCAAAGTTACT
CTGATTTCGACCTTTTTGATTGGCATTTCCTACTACATCAAGCGTTTTAA
GTGGTCAACGCTCAAGTCTCGCAAGATCTTCTTCATTCCCGAACTGGAGG
CCCAGGCCAAAAGAGAGGCGGAGGAGGCCGCCAAAGCAGCGCGCAAGGCC
AAGGAGCAGGAGTGCAACAAGTGCGAGAACCAGAACGAGAAGAAGGACTA
AAAGCTTTCTAGACCAT

BS14239.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14508-RA 1035 CG14508-PA 1..1035 17..1051 5145 99.8 Plus
CG4769-RB 924 CG4769-PB 228..676 253..701 655 76.4 Plus
CG4769-RA 924 CG4769-PA 228..676 253..701 655 76.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14508-RA 1293 CG14508-RA 218..1252 17..1051 5145 99.8 Plus
CG4769-RB 1145 CG4769-RB 357..805 253..701 655 76.4 Plus
CG4769-RA 1521 CG4769-RA 357..805 253..701 655 76.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29202701..29203735 1051..17 5145 99.8 Minus
3L 28110227 3L 5361734..5361968 467..701 500 80.9 Plus
Blast to na_te.dros performed on 2014-11-26 22:16:07 has no hits.

BS14239.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:30 Download gff for BS14239.complete
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 1..1035 17..1051 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:43 Download gff for BS14239.complete
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 218..1256 17..1058 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:52:24 Download gff for BS14239.complete
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 218..1250 17..1049 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:30 Download gff for BS14239.complete
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 218..1256 17..1058 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:02 Download gff for BS14239.complete
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 218..1250 17..1049 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:02 Download gff for BS14239.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29202703..29203735 17..1049 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:52:24 Download gff for BS14239.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25028425..25029457 17..1049 99   Minus

BS14239.pep Sequence

Translation from 16 to 1050

> BS14239.pep
MANKFRSLNSKLFQLAMSGIQRTSVRPRISFPGRGSGFTGNRKLLGALGA
LTGTAGLLIYALETSVDASSDCVHPAHQHWNHKGLLSALDKESVRRGYTV
YKEVCSSCHSLQYMAYRNLVGVCMTEAEAKAEAEAITVRDGPNEEGEYYE
RPGKLSDHFPSPYANEEAARSANNGSYPPDLSYIVSARKGGEDYVFSLLT
GYCDPPAGFALRDGLYFNPYFSGGAIAMGKVVDNEVVSFEDPNVPASAAQ
IAKDVCVFLKWTSEPETDERRLLLIKVTLISTFLIGISYYIKRFKWSTLK
SRKIFFIPELEAQAKREAEEAAKAARKAKEQECNKCENQNEKKD*

BS14239.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14508-PA 344 CG14508-PA 1..344 1..344 1794 100 Plus
CG4769-PB 307 CG4769-PB 32..305 35..309 1010 70.5 Plus
CG4769-PA 307 CG4769-PA 32..305 35..309 1010 70.5 Plus