Clone Sequence Records
BS14239.3prime Sequence
696 bp (668 high quality bases) assembled on 2006-10-13
> BS14239.3prime
ATGGTCTAGAAAGCTTTTAGTCCTTCTTCTCGTTCTGGTTCTCGCACTTG
TTGCACTCCTGCTCCTTGGCCTTGCGCGCTGCTTTGGCGGCCTCCTCCGC
CTCTCTTTTGGCCTGGGCCTCCAGTTCGGGAATGAAGAAGATCTTGCGAG
ACTTGAGCGTTGACCACTTAAAACGCTTGATGTAGTAGGAAATGCCAATC
AAAAAGGTCGAAATCAGAGTAACTTTGATGAGCAGCAGGCGACGTTCGTC
GGTCTCCGGTTCTGAAGTCCACTTGAGGAAGACGCACACATCCTTGGCAA
TTTGGGCGGCCGAAGCAGGCACATTTGGATCTTCAAAGGAGACCACCTCA
TTGTCAACTACCTTGCCCATGGCAATCGCTCCGCCCGAGAAGTACGGATT
GAAGTACAGTCCATCACGAAGGGCAAACCCAGCCGGAGGATCACAGTATC
CGGTGAGCAGGGAGAACACGTAATCCTCGCCGCCCTTGCGAGCCGACACA
ATATAGCTGAGATCCGGCGGATAGGAGCCATTGTTGGCGGAACGGGCCGC
CTCCTCGTTGGCGTACGGAGAGGGGAAGTGATCGGACAGCTTGCCGGGAC
GCTCGTAGTACTCGCCCTCCTCGTTGGGCCCATCCCGCACCGTGATGGCC
TCCGCCTCGGCCTTGGCCTCCGCCTCCGTCATGCACACTCCCACCA
BS14239.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14508-PA | 1035 | CG14508-RA | 356..1035 | 696..17 | 3375 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14508-RA | 1293 | CG14508-RA | 573..1252 | 696..17 | 3385 | 99.9 | Minus |
CG4769-RB | 1145 | CG4769-RB | 571..805 | 601..367 | 500 | 80.9 | Minus |
CG4769-RA | 1521 | CG4769-RA | 571..805 | 601..367 | 500 | 80.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29202701..29203380 | 17..696 | 3385 | 99.9 | Plus |
3L | 28110227 | 3L | 5361734..5361968 | 601..367 | 500 | 80.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:06:03 has no hits.
BS14239.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:24 Download gff for
BS14239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14508-PA | 357..1035 | 17..695 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:41 Download gff for
BS14239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14508-RA | 574..1256 | 10..695 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:49:51 Download gff for
BS14239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14508-RA | 574..1256 | 10..695 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:51 Download gff for
BS14239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29202697..29203379 | 10..695 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:41 Download gff for
BS14239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25028419..25029101 | 10..695 | 99 | | Plus |
BS14239.5prime Sequence
708 bp (681 high quality bases) assembled on 2006-10-13
> BS14239.5prime
GAAGTTATCAGTCGACATGGCCAACAAATTCAGGAGTCTGAACAGCAAAC
TTTTCCAGCTGGCCATGAGCGGCATCCAGCGGACATCGGTGCGTCCGCGG
ATAAGTTTTCCGGGTCGTGGAAGCGGCTTTACTGGAAATCGCAAGCTGCT
GGGAGCCCTGGGAGCCCTAACCGGAACAGCAGGGCTGCTGATCTACGCCC
TGGAAACCAGCGTGGATGCCTCCTCGGACTGCGTGCATCCGGCCCACCAG
CACTGGAATCACAAAGGGCTTTTGTCCGCATTGGACAAGGAGAGCGTGCG
TCGAGGTTACACCGTTTACAAGGAGGTCTGCTCCTCCTGCCACTCATTGC
AGTACATGGCCTATCGCAACCTGGTGGGAGTGTGCATGACGGAGGCGGAG
GCCAAGGCCGAGGCGGAGGCCATCACGGTGCGGGATGGGCCCAACGAGGA
GGGCGAGTACTACGAGCGTCCCGGCAAGCTGTCCGATCACTTCCCCTCTC
CGTACGCCAACGAGGAGGCGGCCCGTTCCGCCAACAATGGCTCCTATCCG
CCGGATCTCAGCTATATTGTGTCGGCTCGCAAGGGCGGCGAGGATTACGT
GTTCTCCCTGCTCACCGGATACTGTGATCCTCCGGCTGGGTTTGCCCTTC
GTGATGGACTGTACTTCAATCCGTACTTCTCGGGCGGAGCGATTGCCATG
GGCAAGGT
BS14239.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14508-PA | 1035 | CG14508-RA | 1..692 | 17..708 | 3410 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14508-RA | 1293 | CG14508-RA | 218..909 | 17..708 | 3430 | 99.7 | Plus |
CG4769-RB | 1145 | CG4769-RB | 357..805 | 253..701 | 655 | 76.4 | Plus |
CG4769-RA | 1521 | CG4769-RA | 357..805 | 253..701 | 655 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:29:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29203044..29203735 | 708..17 | 3430 | 99.7 | Minus |
3L | 28110227 | 3L | 5361734..5361968 | 467..701 | 500 | 80.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:30:00 has no hits.
BS14239.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:25 Download gff for
BS14239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14508-PA | 1..692 | 17..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:05 Download gff for
BS14239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14508-RA | 218..909 | 17..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:24 Download gff for
BS14239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14508-RA | 218..909 | 17..708 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:24 Download gff for
BS14239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29203044..29203735 | 17..708 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:05 Download gff for
BS14239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25028766..25029457 | 17..708 | 99 | | Minus |
BS14239.complete Sequence
1067 bp assembled on 2006-11-01
GenBank Submission: FJ638859
> BS14239.complete
GAAGTTATCAGTCGACATGGCCAACAAATTCAGGAGTCTGAACAGCAAAC
TTTTCCAGCTGGCCATGAGCGGCATCCAGCGGACATCGGTGCGTCCGCGG
ATAAGTTTTCCGGGTCGTGGAAGCGGCTTTACTGGAAATCGCAAGCTGCT
GGGAGCCCTGGGAGCCCTAACCGGAACAGCAGGGCTGCTGATCTACGCCC
TGGAAACCAGCGTGGATGCCTCCTCGGACTGCGTGCATCCGGCCCACCAG
CACTGGAATCACAAAGGGCTTTTGTCCGCATTGGACAAGGAGAGCGTGCG
TCGAGGTTACACCGTTTACAAGGAGGTCTGCTCCTCCTGCCACTCATTGC
AGTACATGGCCTATCGCAACCTGGTGGGAGTGTGCATGACGGAGGCGGAG
GCCAAGGCCGAGGCGGAGGCCATCACGGTGCGGGATGGGCCCAACGAGGA
GGGCGAGTACTACGAGCGTCCCGGCAAGCTGTCCGATCACTTCCCCTCTC
CGTACGCCAACGAGGAGGCGGCCCGTTCCGCCAACAATGGCTCCTATCCG
CCGGATCTCAGCTATATTGTGTCGGCTCGCAAGGGCGGCGAGGATTACGT
GTTCTCCCTGCTCACCGGATACTGTGATCCTCCGGCTGGGTTTGCCCTTC
GTGATGGACTGTACTTCAATCCGTACTTCTCGGGCGGAGCGATTGCCATG
GGCAAGGTAGTTGACAATGAGGTGGTCTCCTTTGAAGATCCAAATGTGCC
TGCTTCGGCCGCCCAAATTGCCAAGGATGTGTGCGTCTTCCTCAAGTGGA
CTTCAGAACCGGAGACCGACGAACGTCGCCTGCTGCTCATCAAAGTTACT
CTGATTTCGACCTTTTTGATTGGCATTTCCTACTACATCAAGCGTTTTAA
GTGGTCAACGCTCAAGTCTCGCAAGATCTTCTTCATTCCCGAACTGGAGG
CCCAGGCCAAAAGAGAGGCGGAGGAGGCCGCCAAAGCAGCGCGCAAGGCC
AAGGAGCAGGAGTGCAACAAGTGCGAGAACCAGAACGAGAAGAAGGACTA
AAAGCTTTCTAGACCAT
BS14239.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14508-RA | 1035 | CG14508-PA | 1..1035 | 17..1051 | 5145 | 99.8 | Plus |
CG4769-RB | 924 | CG4769-PB | 228..676 | 253..701 | 655 | 76.4 | Plus |
CG4769-RA | 924 | CG4769-PA | 228..676 | 253..701 | 655 | 76.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14508-RA | 1293 | CG14508-RA | 218..1252 | 17..1051 | 5145 | 99.8 | Plus |
CG4769-RB | 1145 | CG4769-RB | 357..805 | 253..701 | 655 | 76.4 | Plus |
CG4769-RA | 1521 | CG4769-RA | 357..805 | 253..701 | 655 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29202701..29203735 | 1051..17 | 5145 | 99.8 | Minus |
3L | 28110227 | 3L | 5361734..5361968 | 467..701 | 500 | 80.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:16:07 has no hits.
BS14239.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:30 Download gff for
BS14239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14508-RA | 1..1035 | 17..1051 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:43 Download gff for
BS14239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14508-RA | 218..1256 | 17..1058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:52:24 Download gff for
BS14239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14508-RA | 218..1250 | 17..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:30 Download gff for
BS14239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14508-RA | 218..1256 | 17..1058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:02 Download gff for
BS14239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14508-RA | 218..1250 | 17..1049 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:02 Download gff for
BS14239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29202703..29203735 | 17..1049 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:52:24 Download gff for
BS14239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25028425..25029457 | 17..1049 | 99 | | Minus |
BS14239.pep Sequence
Translation from 16 to 1050
> BS14239.pep
MANKFRSLNSKLFQLAMSGIQRTSVRPRISFPGRGSGFTGNRKLLGALGA
LTGTAGLLIYALETSVDASSDCVHPAHQHWNHKGLLSALDKESVRRGYTV
YKEVCSSCHSLQYMAYRNLVGVCMTEAEAKAEAEAITVRDGPNEEGEYYE
RPGKLSDHFPSPYANEEAARSANNGSYPPDLSYIVSARKGGEDYVFSLLT
GYCDPPAGFALRDGLYFNPYFSGGAIAMGKVVDNEVVSFEDPNVPASAAQ
IAKDVCVFLKWTSEPETDERRLLLIKVTLISTFLIGISYYIKRFKWSTLK
SRKIFFIPELEAQAKREAEEAAKAARKAKEQECNKCENQNEKKD*
BS14239.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14508-PA | 344 | CG14508-PA | 1..344 | 1..344 | 1794 | 100 | Plus |
CG4769-PB | 307 | CG4769-PB | 32..305 | 35..309 | 1010 | 70.5 | Plus |
CG4769-PA | 307 | CG4769-PA | 32..305 | 35..309 | 1010 | 70.5 | Plus |