Clone Sequence Records
BS14244.3prime Sequence
425 bp (385 high quality bases) assembled on 2006-10-13
> BS14244.3prime
ATGGTCTAGAAAGCTTCTACTCTTGCGCTGCAGCCGGCTGTAGCTGCGGC
GCCAAGCGGTTGACGAACCCAATGCCTCCACGGATGATCTTGGCAAAGGC
GGGCGGTGAGCGGGCGGCCAGCGCCTCGAAGGTTATACGCAGCTCAGCGA
AAGCGTTGCGCGGATAGGGATTTCGTCGCGAGCTGTAGCGCATCACCAGA
TAGTGGTAGTAAATAACGGGCGTCATCAATCCAGCGTGGTTCATGAAGGC
CAGCACAATGGCGTAAGGCATGATGAAGATCTCGCAGAATGCAGTTGCCT
TCAGGATATTCGCCGCCTGAAACTCTACAATGGAGATGATGAAACGGGCA
CCCCACCACGAGTTCTGGCCAATCAGATCCAGCAGCTTAAGCGAGTAGCT
TGAGGCGTGCAGAACTGAGTACCGC
BS14244.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9159-PA | 831 | Kr-h2-RA | 426..831 | 422..17 | 2030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kr-h2-RC | 1491 | CG9159-RC | 587..993 | 422..16 | 2035 | 100 | Minus |
Kr-h2-RB | 1324 | CG9159-RB | 669..1075 | 422..16 | 2035 | 100 | Minus |
Kr-h2-RA | 1570 | CG9159-RA | 666..1072 | 422..16 | 2035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6073237..6073463 | 242..16 | 1135 | 100 | Minus |
2L | 23513712 | 2L | 6073040..6073174 | 376..242 | 675 | 100 | Minus |
2L | 23513712 | 2L | 6072938..6072983 | 422..377 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:58:11 has no hits.
BS14244.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:27 Download gff for
BS14244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9159-PA | 423..831 | 17..425 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:51:16 Download gff for
BS14244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kr-h2-RA | 663..1072 | 16..425 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:20:23 Download gff for
BS14244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kr-h2-RA | 663..1072 | 16..425 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:20:23 Download gff for
BS14244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6072935..6072983 | 377..425 | 97 | -> | Minus |
2L | 6073040..6073173 | 243..376 | 100 | -> | Minus |
2L | 6073237..6073463 | 16..242 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:51:16 Download gff for
BS14244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6072935..6072983 | 377..425 | 97 | -> | Minus |
arm_2L | 6073040..6073173 | 243..376 | 100 | -> | Minus |
arm_2L | 6073237..6073463 | 16..242 | 100 | | Minus |
BS14244.5prime Sequence
380 bp (359 high quality bases) assembled on 2006-10-13
> BS14244.5prime
GAAGTTATCAGTCGACATGAGCGCACCCACCGACCAACCACCGCGCTCCG
AGGGCGCTCAGACCAACAGCTCCGAGAGATCCTCACAGCAGCAGGAGCAA
CCGCAGCAATCTCAATCACAGAACGTACCGGCCAAGCTCCTGCAGCATTT
TCAGACAAATCGCATAGATTCCGCGCTATGGGCACTACGTCTGCTGGTCA
TCTTCTTCACCGTCAGCTACGTGCTGCCCATCTTTACCTCACAACAGAGC
GCATTCAGCAAGGTTATGCTGGCTTATGCCGCCATCTCTGCCTTGCGTTT
GCACCAAAAATTGCCCGCGTTCGCGTTCAGTCGGGAGTTCCTTGCTCGAC
TGTTTGCCGAGGACTCGGGTCCTTACATGA
BS14244.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9159-PA | 831 | Kr-h2-RA | 1..364 | 17..380 | 1695 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kr-h2-RC | 1491 | CG9159-RC | 161..525 | 16..380 | 1750 | 98.6 | Plus |
Kr-h2-RB | 1324 | CG9159-RB | 243..607 | 16..380 | 1750 | 98.6 | Plus |
Kr-h2-RA | 1570 | CG9159-RA | 240..604 | 16..380 | 1750 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6072455..6072676 | 16..237 | 1110 | 100 | Plus |
2L | 23513712 | 2L | 6072734..6072876 | 238..380 | 640 | 96.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:58:15 has no hits.
BS14244.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:27 Download gff for
BS14244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9159-PA | 1..363 | 17..379 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:41:46 Download gff for
BS14244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kr-h2-RA | 236..603 | 8..379 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:06:23 Download gff for
BS14244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kr-h2-RA | 236..603 | 8..379 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:06:23 Download gff for
BS14244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6072451..6072676 | 8..237 | 98 | -> | Plus |
2L | 6072734..6072875 | 238..379 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:41:46 Download gff for
BS14244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6072451..6072676 | 8..237 | 98 | -> | Plus |
arm_2L | 6072734..6072875 | 238..379 | 96 | | Plus |
BS14244.complete Sequence
863 bp assembled on 2010-07-02
GenBank Submission: KX801221
> BS14244.complete
GAAGTTATCAGTCGACATGAGCGCACCCACCGACCAACCACCGCGCTCCG
AGGGCGCTCAGACCAACAGCTCCGAGAGATCCTCACAGCAGCAGGAGCAA
CCGCAGCAATCTCAATCACAGAACGTACCGGCCAAGCTCCTGCAGCATTT
TCAGACAAATCGCATAGATTCCGCGCTATGGGCACTACGTCTGCTGGTCA
TCTTCTTCACCGTCAGCTACGTGCTGCCCATCTTTACCTCACAACAGAGC
GCATTCAGCAAGGTTATGCTGGCTAATGCCGCCATCTCTGCCTTGCGTTT
GCACCAGAGATTGCCCGCGTTCGCGTTCAGTCGGGAGTTCCTTGCTCGAC
TGTTTGCCGAGGACTCGTGTCATTACATGATGTACTCCCTGATCTTCTTC
AACATCCGCCCATCGCTGCTGGTTCTGATTCCCGTGCTGCTGTACTCAGT
TCTGCACGCCTCAAGCTACTCGCTTAAGCTGCTGGATCTGATTGGCCAGA
ACTCGTGGTGGGGTGCCCGTTTCATCATCTCCATTGTAGAGTTTCAGGCG
GCGAATATCCTGAAGGCAACTGCATTCTGCGAGATCTTCATCATGCCTTA
CGCCATTGTGCTGGCCTTCATGAACCACGCTGGATTGATGACGCCCGTTA
TTTACTACCACTATCTGGTGATGCGCTACAGCTCGCGACGAAATCCCTAT
CCGCGCAACGCTTTCGCTGAGCTGCGTATAACCTTCGAGGCGCTGGCCGC
CCGCTCACCGCCCGCCTTTGCCAAGATCATCCGTGGAGGCATTGGGTTCG
TCAACCGCTTGGCGCCGCAGCTACAGCCGGCTGCAGCGCAAGAGTAGAAG
CTTTCTAGACCAT
BS14244.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kr-h2-RC | 831 | CG9159-PC | 1..831 | 17..847 | 4155 | 100 | Plus |
Kr-h2-RB | 831 | CG9159-PB | 1..831 | 17..847 | 4155 | 100 | Plus |
Kr-h2-RA | 831 | CG9159-PA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kr-h2-RC | 1491 | CG9159-RC | 161..993 | 16..848 | 4165 | 100 | Plus |
Kr-h2-RB | 1324 | CG9159-RB | 243..1075 | 16..848 | 4165 | 100 | Plus |
Kr-h2-RA | 1570 | CG9159-RA | 240..1072 | 16..848 | 4165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6072734..6072983 | 238..487 | 1250 | 100 | Plus |
2L | 23513712 | 2L | 6073237..6073463 | 622..848 | 1135 | 100 | Plus |
2L | 23513712 | 2L | 6072455..6072676 | 16..237 | 1110 | 100 | Plus |
2L | 23513712 | 2L | 6073040..6073174 | 488..622 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:20:57 has no hits.
BS14244.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:53 Download gff for
BS14244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kr-h2-RA | 242..1072 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:11 Download gff for
BS14244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kr-h2-RA | 241..1071 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:17 Download gff for
BS14244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kr-h2-RA | 241..1071 | 17..847 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:17 Download gff for
BS14244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6073040..6073173 | 488..621 | 100 | -> | Plus |
2L | 6073237..6073462 | 622..847 | 100 | | Plus |
2L | 6072456..6072676 | 17..237 | 100 | -> | Plus |
2L | 6072734..6072983 | 238..487 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:11 Download gff for
BS14244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6073040..6073173 | 488..621 | 100 | -> | Plus |
arm_2L | 6073237..6073462 | 622..847 | 100 | | Plus |
arm_2L | 6072456..6072676 | 17..237 | 100 | -> | Plus |
arm_2L | 6072734..6072983 | 238..487 | 100 | -> | Plus |
BS14244.pep Sequence
Translation from 16 to 846
> BS14244.pep
MSAPTDQPPRSEGAQTNSSERSSQQQEQPQQSQSQNVPAKLLQHFQTNRI
DSALWALRLLVIFFTVSYVLPIFTSQQSAFSKVMLANAAISALRLHQRLP
AFAFSREFLARLFAEDSCHYMMYSLIFFNIRPSLLVLIPVLLYSVLHASS
YSLKLLDLIGQNSWWGARFIISIVEFQAANILKATAFCEIFIMPYAIVLA
FMNHAGLMTPVIYYHYLVMRYSSRRNPYPRNAFAELRITFEALAARSPPA
FAKIIRGGIGFVNRLAPQLQPAAAQE*
BS14244.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kr-h2-PC | 276 | CG9159-PC | 1..276 | 1..276 | 1396 | 100 | Plus |
Kr-h2-PB | 276 | CG9159-PB | 1..276 | 1..276 | 1396 | 100 | Plus |
Kr-h2-PA | 276 | CG9159-PA | 1..276 | 1..276 | 1396 | 100 | Plus |