Clone BS14244 Report

Search the DGRC for BS14244

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptKr-h2-RA
Protein status:BS14244.pep: full length peptide match
Sequenced Size:863

Clone Sequence Records

BS14244.3prime Sequence

425 bp (385 high quality bases) assembled on 2006-10-13

> BS14244.3prime
ATGGTCTAGAAAGCTTCTACTCTTGCGCTGCAGCCGGCTGTAGCTGCGGC
GCCAAGCGGTTGACGAACCCAATGCCTCCACGGATGATCTTGGCAAAGGC
GGGCGGTGAGCGGGCGGCCAGCGCCTCGAAGGTTATACGCAGCTCAGCGA
AAGCGTTGCGCGGATAGGGATTTCGTCGCGAGCTGTAGCGCATCACCAGA
TAGTGGTAGTAAATAACGGGCGTCATCAATCCAGCGTGGTTCATGAAGGC
CAGCACAATGGCGTAAGGCATGATGAAGATCTCGCAGAATGCAGTTGCCT
TCAGGATATTCGCCGCCTGAAACTCTACAATGGAGATGATGAAACGGGCA
CCCCACCACGAGTTCTGGCCAATCAGATCCAGCAGCTTAAGCGAGTAGCT
TGAGGCGTGCAGAACTGAGTACCGC

BS14244.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9159-PA 831 Kr-h2-RA 426..831 422..17 2030 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
Kr-h2-RC 1491 CG9159-RC 587..993 422..16 2035 100 Minus
Kr-h2-RB 1324 CG9159-RB 669..1075 422..16 2035 100 Minus
Kr-h2-RA 1570 CG9159-RA 666..1072 422..16 2035 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6073237..6073463 242..16 1135 100 Minus
2L 23513712 2L 6073040..6073174 376..242 675 100 Minus
2L 23513712 2L 6072938..6072983 422..377 230 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:58:11 has no hits.

BS14244.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:27 Download gff for BS14244.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9159-PA 423..831 17..425 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:51:16 Download gff for BS14244.3prime
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RA 663..1072 16..425 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:20:23 Download gff for BS14244.3prime
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RA 663..1072 16..425 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:20:23 Download gff for BS14244.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6072935..6072983 377..425 97 -> Minus
2L 6073040..6073173 243..376 100 -> Minus
2L 6073237..6073463 16..242 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:51:16 Download gff for BS14244.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6072935..6072983 377..425 97 -> Minus
arm_2L 6073040..6073173 243..376 100 -> Minus
arm_2L 6073237..6073463 16..242 100   Minus

BS14244.5prime Sequence

380 bp (359 high quality bases) assembled on 2006-10-13

> BS14244.5prime
GAAGTTATCAGTCGACATGAGCGCACCCACCGACCAACCACCGCGCTCCG
AGGGCGCTCAGACCAACAGCTCCGAGAGATCCTCACAGCAGCAGGAGCAA
CCGCAGCAATCTCAATCACAGAACGTACCGGCCAAGCTCCTGCAGCATTT
TCAGACAAATCGCATAGATTCCGCGCTATGGGCACTACGTCTGCTGGTCA
TCTTCTTCACCGTCAGCTACGTGCTGCCCATCTTTACCTCACAACAGAGC
GCATTCAGCAAGGTTATGCTGGCTTATGCCGCCATCTCTGCCTTGCGTTT
GCACCAAAAATTGCCCGCGTTCGCGTTCAGTCGGGAGTTCCTTGCTCGAC
TGTTTGCCGAGGACTCGGGTCCTTACATGA

BS14244.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9159-PA 831 Kr-h2-RA 1..364 17..380 1695 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Kr-h2-RC 1491 CG9159-RC 161..525 16..380 1750 98.6 Plus
Kr-h2-RB 1324 CG9159-RB 243..607 16..380 1750 98.6 Plus
Kr-h2-RA 1570 CG9159-RA 240..604 16..380 1750 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6072455..6072676 16..237 1110 100 Plus
2L 23513712 2L 6072734..6072876 238..380 640 96.5 Plus
Blast to na_te.dros performed on 2015-02-12 11:58:15 has no hits.

BS14244.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:27 Download gff for BS14244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9159-PA 1..363 17..379 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:41:46 Download gff for BS14244.5prime
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RA 236..603 8..379 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:06:23 Download gff for BS14244.5prime
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RA 236..603 8..379 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:06:23 Download gff for BS14244.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6072451..6072676 8..237 98 -> Plus
2L 6072734..6072875 238..379 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:41:46 Download gff for BS14244.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6072451..6072676 8..237 98 -> Plus
arm_2L 6072734..6072875 238..379 96   Plus

BS14244.complete Sequence

863 bp assembled on 2010-07-02

GenBank Submission: KX801221

> BS14244.complete
GAAGTTATCAGTCGACATGAGCGCACCCACCGACCAACCACCGCGCTCCG
AGGGCGCTCAGACCAACAGCTCCGAGAGATCCTCACAGCAGCAGGAGCAA
CCGCAGCAATCTCAATCACAGAACGTACCGGCCAAGCTCCTGCAGCATTT
TCAGACAAATCGCATAGATTCCGCGCTATGGGCACTACGTCTGCTGGTCA
TCTTCTTCACCGTCAGCTACGTGCTGCCCATCTTTACCTCACAACAGAGC
GCATTCAGCAAGGTTATGCTGGCTAATGCCGCCATCTCTGCCTTGCGTTT
GCACCAGAGATTGCCCGCGTTCGCGTTCAGTCGGGAGTTCCTTGCTCGAC
TGTTTGCCGAGGACTCGTGTCATTACATGATGTACTCCCTGATCTTCTTC
AACATCCGCCCATCGCTGCTGGTTCTGATTCCCGTGCTGCTGTACTCAGT
TCTGCACGCCTCAAGCTACTCGCTTAAGCTGCTGGATCTGATTGGCCAGA
ACTCGTGGTGGGGTGCCCGTTTCATCATCTCCATTGTAGAGTTTCAGGCG
GCGAATATCCTGAAGGCAACTGCATTCTGCGAGATCTTCATCATGCCTTA
CGCCATTGTGCTGGCCTTCATGAACCACGCTGGATTGATGACGCCCGTTA
TTTACTACCACTATCTGGTGATGCGCTACAGCTCGCGACGAAATCCCTAT
CCGCGCAACGCTTTCGCTGAGCTGCGTATAACCTTCGAGGCGCTGGCCGC
CCGCTCACCGCCCGCCTTTGCCAAGATCATCCGTGGAGGCATTGGGTTCG
TCAACCGCTTGGCGCCGCAGCTACAGCCGGCTGCAGCGCAAGAGTAGAAG
CTTTCTAGACCAT

BS14244.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Kr-h2-RC 831 CG9159-PC 1..831 17..847 4155 100 Plus
Kr-h2-RB 831 CG9159-PB 1..831 17..847 4155 100 Plus
Kr-h2-RA 831 CG9159-PA 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Kr-h2-RC 1491 CG9159-RC 161..993 16..848 4165 100 Plus
Kr-h2-RB 1324 CG9159-RB 243..1075 16..848 4165 100 Plus
Kr-h2-RA 1570 CG9159-RA 240..1072 16..848 4165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6072734..6072983 238..487 1250 100 Plus
2L 23513712 2L 6073237..6073463 622..848 1135 100 Plus
2L 23513712 2L 6072455..6072676 16..237 1110 100 Plus
2L 23513712 2L 6073040..6073174 488..622 675 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:20:57 has no hits.

BS14244.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:53 Download gff for BS14244.complete
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RA 242..1072 17..847 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:11 Download gff for BS14244.complete
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RA 241..1071 17..847 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:17 Download gff for BS14244.complete
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RA 241..1071 17..847 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:17 Download gff for BS14244.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6073040..6073173 488..621 100 -> Plus
2L 6073237..6073462 622..847 100   Plus
2L 6072456..6072676 17..237 100 -> Plus
2L 6072734..6072983 238..487 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:11 Download gff for BS14244.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6073040..6073173 488..621 100 -> Plus
arm_2L 6073237..6073462 622..847 100   Plus
arm_2L 6072456..6072676 17..237 100 -> Plus
arm_2L 6072734..6072983 238..487 100 -> Plus

BS14244.pep Sequence

Translation from 16 to 846

> BS14244.pep
MSAPTDQPPRSEGAQTNSSERSSQQQEQPQQSQSQNVPAKLLQHFQTNRI
DSALWALRLLVIFFTVSYVLPIFTSQQSAFSKVMLANAAISALRLHQRLP
AFAFSREFLARLFAEDSCHYMMYSLIFFNIRPSLLVLIPVLLYSVLHASS
YSLKLLDLIGQNSWWGARFIISIVEFQAANILKATAFCEIFIMPYAIVLA
FMNHAGLMTPVIYYHYLVMRYSSRRNPYPRNAFAELRITFEALAARSPPA
FAKIIRGGIGFVNRLAPQLQPAAAQE*

BS14244.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
Kr-h2-PC 276 CG9159-PC 1..276 1..276 1396 100 Plus
Kr-h2-PB 276 CG9159-PB 1..276 1..276 1396 100 Plus
Kr-h2-PA 276 CG9159-PA 1..276 1..276 1396 100 Plus