Clone Sequence Records
BS14247.3prime Sequence
529 bp (499 high quality bases) assembled on 2006-10-13
> BS14247.3prime
ATGGTCTAGAAAGCTTTTAAGTGCGTTTCTTGGTCATGTAAACTCGAGCT
GTGGCGTAGAGGACATGCGTACAAGCGTATATATTGCCCAGAGCGCTTCC
CAGCAGTGCTCCGATCACGTTGGGAATGGGATAAGCCTGCCAGTCACGTC
CCCAGTCTAGTGGAGCGACCACGCTCCCGGCCCAAGCTCCCAGAATACCG
CCCAGTGCATTGTACTTGAACAGATTCAGAGCCGTGTCCTCGCACTTGGT
CACAAAGTCCGGTTTCTCGCAGAAGCACACTTGTAGTGCTCCTCCGCCAC
CGAGGAGGAAAACCGTGGGTGACACCGTCAACAAGGTCATCAGTAAGGCC
AAGACGAAGGTCTGCTCATAGTTGCCCAGCACCGGGGCTCCCAAAATTAT
GCAGATAAAGGCGTAGAGGAGTGTACACAGGAACTGCAGGGTGAATCCTC
CGAGGAGCTCCCGCGGCGTAAAGTACGAGTTCTTTTTCTGGCGCTGTTTG
GCGGTTAGGACGCCCTCCTCACCCTTCCC
BS14247.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9376-PA | 711 | CG9376-RA | 199..711 | 529..17 | 2515 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9376-RA | 1035 | CG9376-RA | 295..808 | 529..16 | 2540 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19612749..19613262 | 529..16 | 2540 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:06:09 has no hits.
BS14247.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:28 Download gff for
BS14247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-PA | 199..711 | 17..529 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:45 Download gff for
BS14247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 295..811 | 12..529 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:07 Download gff for
BS14247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 295..811 | 12..529 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:07 Download gff for
BS14247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19612749..19613265 | 12..529 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:45 Download gff for
BS14247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19605849..19606365 | 12..529 | 99 | | Minus |
BS14247.5prime Sequence
575 bp (493 high quality bases) assembled on 2006-10-13
> BS14247.5prime
GAAGTTATCAGTCGACATGGTTTCCCGATTCGACCAACAAAAGACCAAGC
ACCAGCTCTTCCACGTGTCCCTCAGCCTCGCCACCATCCTGATCTGCATG
GCGTACATGCAGTATCGCCGGAATTGGGCACATCTCGGCAGCTTCTGGGA
TTCTCTTGTCGTCCCTATTGTTTTCCTCGGAGAGCTGCTAAAAGTTGTTT
TGGCTCGCTTCTACGGGAAGGTTGAGGATGGCGTCCTAACCGCCAAACAG
CGCCAGAAAAAGAACTCGTACTTTACGCCGCGGGAGCTCCTCGGAGGATT
CACCCTGCAGTTCCTGTGTACACTCCTCTACGCCTTTATCTGCATAATTT
TGGGAGCCCCGGTGCTGGGCAACTATGAGCAGACCTTCGTCTTGGCCTTA
CTGATGACCTTGTTGACGGTGTCACCCACGGTTTTCCTCCTCGGTGGCGG
AGGAGCACTACAAGTGTGCTTCTGCGAGAAACCGGACTTTGTGACCAAGT
GCGAGGACACGGCTCTGAATCTGTTCAAGTACAATGCACTGGGCGGTATT
CTGGGAGCTTGGGCCGGGAGCGTGG
BS14247.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9376-PA | 711 | CG9376-RA | 1..559 | 17..575 | 2795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9376-RA | 1035 | CG9376-RA | 96..655 | 16..575 | 2800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19612550..19613109 | 16..575 | 2800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:12:42 has no hits.
BS14247.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:28 Download gff for
BS14247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-PA | 1..559 | 17..575 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:39 Download gff for
BS14247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 88..655 | 9..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:28 Download gff for
BS14247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 88..655 | 9..575 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:28 Download gff for
BS14247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19612542..19613109 | 9..575 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:39 Download gff for
BS14247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19605642..19606209 | 9..575 | 99 | | Plus |
BS14247.complete Sequence
743 bp assembled on 2006-11-01
GenBank Submission: FJ637622
> BS14247.complete
GAAGTTATCAGTCGACATGGTTTCCCGATTCGACCAACAAAAGACCAAGC
ACCAGCTCTTCCACGTGTCCCTCAGCCTCGCCACCATCCTGATCTGCATG
GCGTACATGCAGTATCGCCGGAATTGGGCACATCTCGGCAGCTTCTGGGA
TTCTCTTGTCGTCCCTATTGTTTTCCTCGGAGAGCTGCTAAAAGTTGTTT
TGGCTCGCTTCTACGGGAAGGTTGAGGATGGCGTCCTAACCGCCAAACAG
CGCCAGAAAAAGAACTCGTACTTTACGCCGCGGGAGCTCCTCGGAGGATT
CACCCTGCAGTTCCTGTGTACACTCCTCTACGCCTTTATCTGCATAATTT
TGGGAGCCCCGGTGCTGGGCAACTATGAGCAGACCTTCGTCTTGGCCTTA
CTGATGACCTTGTTGACGGTGTCACCCACGGTTTTCCTCCTCGGTGGCGG
AGGAGCACTACAAGTGTGCTTCTGCGAGAAACCGGACTTTGTGACCAAGT
GCGAGGACACGGCTCTGAATCTGTTCAAGTACAATGCACTGGGCGGTATT
CTGGGAGCTTGGGCCGGGAGCGTGGTCGCTCCACTAGACTGGGGACGTGA
CTGGCAGGCTTATCCCATTCCCAACGTGATCGGAGCACTGCTGGGAAGCG
CTCTGGGCAATATATACGCTTGTACGCATGTCCTCTACGCCACAGCTCGA
GTTTACATGACCAAGAAACGCACTTAAAAGCTTTCTAGACCAT
BS14247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9376-RA | 711 | CG9376-PA | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9376-RA | 1035 | CG9376-RA | 96..808 | 16..728 | 3565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19612550..19613262 | 16..728 | 3565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:37:15 has no hits.
BS14247.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:31 Download gff for
BS14247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 1..711 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:44 Download gff for
BS14247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 4..727 | 9..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:18 Download gff for
BS14247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 97..805 | 17..725 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:32 Download gff for
BS14247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 4..727 | 9..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:04 Download gff for
BS14247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 97..805 | 17..725 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:04 Download gff for
BS14247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19612551..19613259 | 17..725 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:18 Download gff for
BS14247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19605651..19606359 | 17..725 | 100 | | Plus |
BS14247.pep Sequence
Translation from 16 to 726
> BS14247.pep
MVSRFDQQKTKHQLFHVSLSLATILICMAYMQYRRNWAHLGSFWDSLVVP
IVFLGELLKVVLARFYGKVEDGVLTAKQRQKKNSYFTPRELLGGFTLQFL
CTLLYAFICIILGAPVLGNYEQTFVLALLMTLLTVSPTVFLLGGGGALQV
CFCEKPDFVTKCEDTALNLFKYNALGGILGAWAGSVVAPLDWGRDWQAYP
IPNVIGALLGSALGNIYACTHVLYATARVYMTKKRT*
BS14247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9376-PA | 236 | CG9376-PA | 1..236 | 1..236 | 1241 | 100 | Plus |
